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Conserved domains on  [gi|17563316|ref|NP_504972|]
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Serpentine receptor class delta-30 [Caenorhabditis elegans]

Protein Classification

serpentine receptor( domain architecture ID 366230)

serpentine receptor, also known as seven TM receptor (Str), belongs to a family of seven-transmembrane (7TM) G protein-coupled receptors involved in chemoreception, a central sense of soil nematodes like Caenorhabditis elegans

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
7TM_GPCR_Srd super family cl22924
Serpentine type 7TM GPCR chemoreceptor Srd; Chemoreception is mediated in Caenorhabditis ...
 3-286 2.43e-55

Serpentine type 7TM GPCR chemoreceptor Srd; Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srd is part of the larger Str superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'.


The actual alignment was detected with superfamily member pfam10317:

Pssm-ID: 419896  Cd Length: 292  Bit Score: 181.59  E-value: 2.43e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17563316     3 YQIIHSVLSTVGVSLNAFMMYLALTKSPKIMRPCSAIITIKTGTDILASIMSFFVMQRVITDGSSIIVIPTGPCTNFGKT 82
Cdd:pfam10317   1 FSIYYPIFFILGLILNLLLLYLIIFKSPKSLKTYRILLLNTAITQIISCILAFFTQQRIIPNGVSMALISYGPCKYFGPW 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17563316    83 ACYVGHMLMLCFLEYNLIWMISSYIFRYYILYVRDPPIKHLVFVAFCLSIPSMVHMAA-WFSFYDSNETTE--------- 152
Cdd:pfam10317  81 FCYSGYSLLQHFLLHSGWSLLLTFYYRYYILKHVDPKRKKLILLIIIHYIPSLSQLIViFLSPTDFLPVEAltkelhpny 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17563316   153 DLSSYGIgSGEMALGgevvYWSAITLITQLFITAFLVVVAYIWIRE-TLCSFAVKMGSVKKDVKNLNKRLVKVINFQVFL 231
Cdd:pfam10317 161 NLTDYTV-TGFSDLQ----SFPALINTLIMTIPVFPIPIIILILRRkILKLLNSNSVNMSPTTKAQHRQLIKGLTIQALL 235

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 17563316   232 PSFI-FLGVITFASMFTSKISYEYAQYAISVIFMFSPICSPFSYILFVPHYRNVII 286
Cdd:pfam10317 236 PLFSyIPGVTLYLLSQLTGTEFLILEYFIFVLPALPPLLDPLITIYFVTPYRRAIL 291
 
Name Accession Description Interval E-value
7TM_GPCR_Srd pfam10317
Serpentine type 7TM GPCR chemoreceptor Srd; Chemoreception is mediated in Caenorhabditis ...
 3-286 2.43e-55

Serpentine type 7TM GPCR chemoreceptor Srd; Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srd is part of the larger Str superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'.


Pssm-ID: 402094  Cd Length: 292  Bit Score: 181.59  E-value: 2.43e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17563316     3 YQIIHSVLSTVGVSLNAFMMYLALTKSPKIMRPCSAIITIKTGTDILASIMSFFVMQRVITDGSSIIVIPTGPCTNFGKT 82
Cdd:pfam10317   1 FSIYYPIFFILGLILNLLLLYLIIFKSPKSLKTYRILLLNTAITQIISCILAFFTQQRIIPNGVSMALISYGPCKYFGPW 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17563316    83 ACYVGHMLMLCFLEYNLIWMISSYIFRYYILYVRDPPIKHLVFVAFCLSIPSMVHMAA-WFSFYDSNETTE--------- 152
Cdd:pfam10317  81 FCYSGYSLLQHFLLHSGWSLLLTFYYRYYILKHVDPKRKKLILLIIIHYIPSLSQLIViFLSPTDFLPVEAltkelhpny 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17563316   153 DLSSYGIgSGEMALGgevvYWSAITLITQLFITAFLVVVAYIWIRE-TLCSFAVKMGSVKKDVKNLNKRLVKVINFQVFL 231
Cdd:pfam10317 161 NLTDYTV-TGFSDLQ----SFPALINTLIMTIPVFPIPIIILILRRkILKLLNSNSVNMSPTTKAQHRQLIKGLTIQALL 235

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 17563316   232 PSFI-FLGVITFASMFTSKISYEYAQYAISVIFMFSPICSPFSYILFVPHYRNVII 286
Cdd:pfam10317 236 PLFSyIPGVTLYLLSQLTGTEFLILEYFIFVLPALPPLLDPLITIYFVTPYRRAIL 291
 
Name Accession Description Interval E-value
7TM_GPCR_Srd pfam10317
Serpentine type 7TM GPCR chemoreceptor Srd; Chemoreception is mediated in Caenorhabditis ...
 3-286 2.43e-55

Serpentine type 7TM GPCR chemoreceptor Srd; Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srd is part of the larger Str superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'.


Pssm-ID: 402094  Cd Length: 292  Bit Score: 181.59  E-value: 2.43e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17563316     3 YQIIHSVLSTVGVSLNAFMMYLALTKSPKIMRPCSAIITIKTGTDILASIMSFFVMQRVITDGSSIIVIPTGPCTNFGKT 82
Cdd:pfam10317   1 FSIYYPIFFILGLILNLLLLYLIIFKSPKSLKTYRILLLNTAITQIISCILAFFTQQRIIPNGVSMALISYGPCKYFGPW 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17563316    83 ACYVGHMLMLCFLEYNLIWMISSYIFRYYILYVRDPPIKHLVFVAFCLSIPSMVHMAA-WFSFYDSNETTE--------- 152
Cdd:pfam10317  81 FCYSGYSLLQHFLLHSGWSLLLTFYYRYYILKHVDPKRKKLILLIIIHYIPSLSQLIViFLSPTDFLPVEAltkelhpny 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17563316   153 DLSSYGIgSGEMALGgevvYWSAITLITQLFITAFLVVVAYIWIRE-TLCSFAVKMGSVKKDVKNLNKRLVKVINFQVFL 231
Cdd:pfam10317 161 NLTDYTV-TGFSDLQ----SFPALINTLIMTIPVFPIPIIILILRRkILKLLNSNSVNMSPTTKAQHRQLIKGLTIQALL 235

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 17563316   232 PSFI-FLGVITFASMFTSKISYEYAQYAISVIFMFSPICSPFSYILFVPHYRNVII 286
Cdd:pfam10317 236 PLFSyIPGVTLYLLSQLTGTEFLILEYFIFVLPALPPLLDPLITIYFVTPYRRAIL 291
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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