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Conserved domains on  [gi|17562822|ref|NP_504566|]
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Solute carrier family 3 member 2 N-terminal domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SLC3A2_N super family cl24060
Solute carrier family 3 member 2 N-terminus; This domain is found at the N-terminus of solute ...
35-78 1.48e-06

Solute carrier family 3 member 2 N-terminus; This domain is found at the N-terminus of solute carrier family 3 member 2 proteins (4F2 cell-surface antigen heavy chain).


The actual alignment was detected with superfamily member pfam16028:

Pssm-ID: 464983  Cd Length: 77  Bit Score: 41.92  E-value: 1.48e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 17562822   35 GYSLDELNAKREEPKWRVARYTAIAMFWGIWGALLAGSILIIVL 78
Cdd:pfam16028 15 GLTKEELLKYANDPFWVRVRWALFVLFWLGWLGMLVGAIVIIVQ 58
 
Name Accession Description Interval E-value
SLC3A2_N pfam16028
Solute carrier family 3 member 2 N-terminus; This domain is found at the N-terminus of solute ...
35-78 1.48e-06

Solute carrier family 3 member 2 N-terminus; This domain is found at the N-terminus of solute carrier family 3 member 2 proteins (4F2 cell-surface antigen heavy chain).


Pssm-ID: 464983  Cd Length: 77  Bit Score: 41.92  E-value: 1.48e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 17562822   35 GYSLDELNAKREEPKWRVARYTAIAMFWGIWGALLAGSILIIVL 78
Cdd:pfam16028 15 GLTKEELLKYANDPFWVRVRWALFVLFWLGWLGMLVGAIVIIVQ 58
AmyAc_maltase-like cd11329
Alpha amylase catalytic domain family found in maltase; Maltase (EC 3.2.1.20) hydrolyzes the ...
35-78 2.09e-05

Alpha amylase catalytic domain family found in maltase; Maltase (EC 3.2.1.20) hydrolyzes the terminal, non-reducing (1->4)-linked alpha-D-glucose residues in maltose, releasing alpha-D-glucose. The catalytic triad (DED) which is highly conserved in the other maltase group is not present in this subfamily. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.


Pssm-ID: 200468 [Multi-domain]  Cd Length: 477  Bit Score: 41.21  E-value: 2.09e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 17562822  35 GYSLDELNAKREEPKWRVARYTAIAMFWGIWGALLAGSILIIVL 78
Cdd:cd11329  10 GMGKEELMKYANDPFWVRLRWLLFVLFWLLWVAMLLGAVAIIVL 53
 
Name Accession Description Interval E-value
SLC3A2_N pfam16028
Solute carrier family 3 member 2 N-terminus; This domain is found at the N-terminus of solute ...
35-78 1.48e-06

Solute carrier family 3 member 2 N-terminus; This domain is found at the N-terminus of solute carrier family 3 member 2 proteins (4F2 cell-surface antigen heavy chain).


Pssm-ID: 464983  Cd Length: 77  Bit Score: 41.92  E-value: 1.48e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 17562822   35 GYSLDELNAKREEPKWRVARYTAIAMFWGIWGALLAGSILIIVL 78
Cdd:pfam16028 15 GLTKEELLKYANDPFWVRVRWALFVLFWLGWLGMLVGAIVIIVQ 58
AmyAc_maltase-like cd11329
Alpha amylase catalytic domain family found in maltase; Maltase (EC 3.2.1.20) hydrolyzes the ...
35-78 2.09e-05

Alpha amylase catalytic domain family found in maltase; Maltase (EC 3.2.1.20) hydrolyzes the terminal, non-reducing (1->4)-linked alpha-D-glucose residues in maltose, releasing alpha-D-glucose. The catalytic triad (DED) which is highly conserved in the other maltase group is not present in this subfamily. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.


Pssm-ID: 200468 [Multi-domain]  Cd Length: 477  Bit Score: 41.21  E-value: 2.09e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 17562822  35 GYSLDELNAKREEPKWRVARYTAIAMFWGIWGALLAGSILIIVL 78
Cdd:cd11329  10 GMGKEELMKYANDPFWVRLRWLLFVLFWLLWVAMLLGAVAIIVL 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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