Homeobox protein ceh-33 [Caenorhabditis elegans]
sine oculis homeobox family protein( domain architecture ID 11245836)
sine oculis homeobox (SIX) family protein acts as a transcription factor which plays pivotal developmental roles in cell populations that give rise to the head, retina, ear, nose, brain, kidney, muscle and gonads
List of domain hits
Name | Accession | Description | Interval | E-value | |||
SIX1_SD | pfam16878 | Transcriptional regulator, SIX1, N-terminal SD domain; SIX1_SD is a family of eukaryotic ... |
20-127 | 1.94e-58 | |||
Transcriptional regulator, SIX1, N-terminal SD domain; SIX1_SD is a family of eukaryotic proteins, and it is found N-terminal to the Homeobox domain. As a transcription factor it lacks intrinsic activation domains and thus needs to bind to the EYA family of co-factors in order to mediate transcriptional activation. It is the SD domain that is necessary for this protein-protein interaction, binding to the C-terminal region of EYA - Eyes absent homolog proteins. : Pssm-ID: 465293 Cd Length: 110 Bit Score: 181.20 E-value: 1.94e-58
|
|||||||
homeodomain | cd00086 | Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ... |
138-189 | 2.21e-13 | |||
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner. : Pssm-ID: 238039 [Multi-domain] Cd Length: 59 Bit Score: 63.03 E-value: 2.21e-13
|
|||||||
Name | Accession | Description | Interval | E-value | |||
SIX1_SD | pfam16878 | Transcriptional regulator, SIX1, N-terminal SD domain; SIX1_SD is a family of eukaryotic ... |
20-127 | 1.94e-58 | |||
Transcriptional regulator, SIX1, N-terminal SD domain; SIX1_SD is a family of eukaryotic proteins, and it is found N-terminal to the Homeobox domain. As a transcription factor it lacks intrinsic activation domains and thus needs to bind to the EYA family of co-factors in order to mediate transcriptional activation. It is the SD domain that is necessary for this protein-protein interaction, binding to the C-terminal region of EYA - Eyes absent homolog proteins. Pssm-ID: 465293 Cd Length: 110 Bit Score: 181.20 E-value: 1.94e-58
|
|||||||
homeodomain | cd00086 | Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ... |
138-189 | 2.21e-13 | |||
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner. Pssm-ID: 238039 [Multi-domain] Cd Length: 59 Bit Score: 63.03 E-value: 2.21e-13
|
|||||||
HOX | smart00389 | Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ... |
148-189 | 2.83e-13 | |||
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes Pssm-ID: 197696 [Multi-domain] Cd Length: 57 Bit Score: 63.04 E-value: 2.83e-13
|
|||||||
Homeodomain | pfam00046 | Homeodomain; |
154-189 | 1.11e-10 | |||
Homeodomain; Pssm-ID: 459649 [Multi-domain] Cd Length: 57 Bit Score: 55.97 E-value: 1.11e-10
|
|||||||
COG5576 | COG5576 | Homeodomain-containing transcription factor [Transcription]; |
155-189 | 5.58e-03 | |||
Homeodomain-containing transcription factor [Transcription]; Pssm-ID: 227863 [Multi-domain] Cd Length: 156 Bit Score: 36.65 E-value: 5.58e-03
|
|||||||
Name | Accession | Description | Interval | E-value | |||
SIX1_SD | pfam16878 | Transcriptional regulator, SIX1, N-terminal SD domain; SIX1_SD is a family of eukaryotic ... |
20-127 | 1.94e-58 | |||
Transcriptional regulator, SIX1, N-terminal SD domain; SIX1_SD is a family of eukaryotic proteins, and it is found N-terminal to the Homeobox domain. As a transcription factor it lacks intrinsic activation domains and thus needs to bind to the EYA family of co-factors in order to mediate transcriptional activation. It is the SD domain that is necessary for this protein-protein interaction, binding to the C-terminal region of EYA - Eyes absent homolog proteins. Pssm-ID: 465293 Cd Length: 110 Bit Score: 181.20 E-value: 1.94e-58
|
|||||||
homeodomain | cd00086 | Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ... |
138-189 | 2.21e-13 | |||
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner. Pssm-ID: 238039 [Multi-domain] Cd Length: 59 Bit Score: 63.03 E-value: 2.21e-13
|
|||||||
HOX | smart00389 | Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ... |
148-189 | 2.83e-13 | |||
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes Pssm-ID: 197696 [Multi-domain] Cd Length: 57 Bit Score: 63.04 E-value: 2.83e-13
|
|||||||
Homeodomain | pfam00046 | Homeodomain; |
154-189 | 1.11e-10 | |||
Homeodomain; Pssm-ID: 459649 [Multi-domain] Cd Length: 57 Bit Score: 55.97 E-value: 1.11e-10
|
|||||||
Homeobox_KN | pfam05920 | Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ... |
155-187 | 2.42e-10 | |||
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified. Pssm-ID: 428673 Cd Length: 39 Bit Score: 54.44 E-value: 2.42e-10
|
|||||||
COG5576 | COG5576 | Homeodomain-containing transcription factor [Transcription]; |
155-189 | 5.58e-03 | |||
Homeodomain-containing transcription factor [Transcription]; Pssm-ID: 227863 [Multi-domain] Cd Length: 156 Bit Score: 36.65 E-value: 5.58e-03
|
|||||||
Blast search parameters | ||||
|