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Conserved domains on  [gi|25148328|ref|NP_503882|]
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Anterior pharynx in excess protein 1 [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DSL super family cl19567
Delta serrate ligand; This family has been redefined to correspond to the EGF-like domain ...
 108-172 9.61e-18

Delta serrate ligand; This family has been redefined to correspond to the EGF-like domain defined by structure.


The actual alignment was detected with superfamily member smart00051:

Pssm-ID: 473190  Cd Length: 63  Bit Score: 77.37  E-value: 9.61e-18
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 25148328    108 WNSDAPIVIETsrgfNVTVQLRNLCSSNYHGKRCNRYCIAN--AKLHWECSTHGVRRCSAGWSGEDC 172
Cdd:smart00051   1 WSTDLHIGGRT----FLEYQIRVTCDENYYGEGCNKFCRPRddFFGHYTCDENGNKGCLEGWMGPYC 63
 
Name Accession Description Interval E-value
DSL smart00051
delta serrate ligand;
108-172 9.61e-18

delta serrate ligand;


Pssm-ID: 128366  Cd Length: 63  Bit Score: 77.37  E-value: 9.61e-18
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 25148328    108 WNSDAPIVIETsrgfNVTVQLRNLCSSNYHGKRCNRYCIAN--AKLHWECSTHGVRRCSAGWSGEDC 172
Cdd:smart00051   1 WSTDLHIGGRT----FLEYQIRVTCDENYYGEGCNKFCRPRddFFGHYTCDENGNKGCLEGWMGPYC 63
DSL pfam01414
Delta serrate ligand; This family has been redefined to correspond to the EGF-like domain ...
 132-175 7.45e-12

Delta serrate ligand; This family has been redefined to correspond to the EGF-like domain defined by structure.


Pssm-ID: 460202  Cd Length: 46  Bit Score: 59.94  E-value: 7.45e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 25148328   132 CSSNYHGKRCNRYCIANAKL--HWECSTHGVRRCSAGWSGEDCSNP 175
Cdd:pfam01414   1 CDENYYGSTCSKFCRPRDDKfgHYTCDANGNKVCLPGWTGPYCDKP 46
 
Name Accession Description Interval E-value
DSL smart00051
delta serrate ligand;
108-172 9.61e-18

delta serrate ligand;


Pssm-ID: 128366  Cd Length: 63  Bit Score: 77.37  E-value: 9.61e-18
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 25148328    108 WNSDAPIVIETsrgfNVTVQLRNLCSSNYHGKRCNRYCIAN--AKLHWECSTHGVRRCSAGWSGEDC 172
Cdd:smart00051   1 WSTDLHIGGRT----FLEYQIRVTCDENYYGEGCNKFCRPRddFFGHYTCDENGNKGCLEGWMGPYC 63
DSL pfam01414
Delta serrate ligand; This family has been redefined to correspond to the EGF-like domain ...
 132-175 7.45e-12

Delta serrate ligand; This family has been redefined to correspond to the EGF-like domain defined by structure.


Pssm-ID: 460202  Cd Length: 46  Bit Score: 59.94  E-value: 7.45e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 25148328   132 CSSNYHGKRCNRYCIANAKL--HWECSTHGVRRCSAGWSGEDCSNP 175
Cdd:pfam01414   1 CDENYYGSTCSKFCRPRDDKfgHYTCDANGNKVCLPGWTGPYCDKP 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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