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Conserved domains on  [gi|32566073|ref|NP_502893|]
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Serpentine Receptor, class V [Caenorhabditis elegans]

Protein Classification

serpentine receptor class V( domain architecture ID 10563410)

serpentine receptor class V (Srv) belongs to a family of seven-transmembrane (7TM) G protein-coupled receptors involved in chemoreception, a central sense of soil nematodes like Caenorhabditis elegans

Gene Ontology:  GO:0004930
PubMed:  7585938|18050473

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
7TM_GPCR_Srv pfam10323
Serpentine type 7TM GPCR chemoreceptor Srv; Chemoreception is mediated in Caenorhabditis ...
23-309 3.63e-85

Serpentine type 7TM GPCR chemoreceptor Srv; Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srv is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'.


:

Pssm-ID: 370977  Cd Length: 283  Bit Score: 258.32  E-value: 3.63e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32566073    23 QIILVTVTFPFYIFLLAFIISAQLRNIDdLATPFFKLCISSSFIDLTTLLTNYFGAMFPKFGYFFNFYMGLGQIYPHIYL 102
Cdd:pfam10323   1 FYGLSIVTLPLYFLILICLLKLRNRSKT-FKTTFYTLLLQHCIADIITLLNYYFGAMFPKIGWFRDFYFNYQHYYAAIYY 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32566073   103 YIAWSMGICQAMSVSVLATNRLSAMIFPE-HYRKIWKSNKLWIGVGIQFLPGLGIGCCTFFNTTEIYINGNGgiIPRFID 181
Cdd:pfam10323  80 NIAYYTLYIRCTGISLLSTNRYLAICFPIsRLTKIWQSARLWKIILIYWLPGLLISLVVLKNTDIYYDNEEN--MPVVAD 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32566073   182 KQMTSTFFKIGGSFLFLNCLYLIIAYFYLFYSLKKRNSRianfpVSKSKQIQKLREIRLFIMISITVAVQLTILIFFSLK 261
Cdd:pfam10323 158 KDVIQRFTLIALIFVFVTCIYCIIAYGALFFVIRKKNNK-----NSQTKSKSLKREVRLAFQVFILVLAFLIILIFYILS 232
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 32566073   262 LLKFFELNM-EEFYL--FYNALSDLFASINPYLLWIFSDSLRKYVYWKMGI 309
Cdd:pfam10323 233 NYFSQTLNTdPIFYLraLYPIASGLLSYINPYLLLIFNRDLRKQVRKMLKC 283
 
Name Accession Description Interval E-value
7TM_GPCR_Srv pfam10323
Serpentine type 7TM GPCR chemoreceptor Srv; Chemoreception is mediated in Caenorhabditis ...
23-309 3.63e-85

Serpentine type 7TM GPCR chemoreceptor Srv; Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srv is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'.


Pssm-ID: 370977  Cd Length: 283  Bit Score: 258.32  E-value: 3.63e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32566073    23 QIILVTVTFPFYIFLLAFIISAQLRNIDdLATPFFKLCISSSFIDLTTLLTNYFGAMFPKFGYFFNFYMGLGQIYPHIYL 102
Cdd:pfam10323   1 FYGLSIVTLPLYFLILICLLKLRNRSKT-FKTTFYTLLLQHCIADIITLLNYYFGAMFPKIGWFRDFYFNYQHYYAAIYY 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32566073   103 YIAWSMGICQAMSVSVLATNRLSAMIFPE-HYRKIWKSNKLWIGVGIQFLPGLGIGCCTFFNTTEIYINGNGgiIPRFID 181
Cdd:pfam10323  80 NIAYYTLYIRCTGISLLSTNRYLAICFPIsRLTKIWQSARLWKIILIYWLPGLLISLVVLKNTDIYYDNEEN--MPVVAD 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32566073   182 KQMTSTFFKIGGSFLFLNCLYLIIAYFYLFYSLKKRNSRianfpVSKSKQIQKLREIRLFIMISITVAVQLTILIFFSLK 261
Cdd:pfam10323 158 KDVIQRFTLIALIFVFVTCIYCIIAYGALFFVIRKKNNK-----NSQTKSKSLKREVRLAFQVFILVLAFLIILIFYILS 232
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 32566073   262 LLKFFELNM-EEFYL--FYNALSDLFASINPYLLWIFSDSLRKYVYWKMGI 309
Cdd:pfam10323 233 NYFSQTLNTdPIFYLraLYPIASGLLSYINPYLLLIFNRDLRKQVRKMLKC 283
 
Name Accession Description Interval E-value
7TM_GPCR_Srv pfam10323
Serpentine type 7TM GPCR chemoreceptor Srv; Chemoreception is mediated in Caenorhabditis ...
23-309 3.63e-85

Serpentine type 7TM GPCR chemoreceptor Srv; Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srv is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'.


Pssm-ID: 370977  Cd Length: 283  Bit Score: 258.32  E-value: 3.63e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32566073    23 QIILVTVTFPFYIFLLAFIISAQLRNIDdLATPFFKLCISSSFIDLTTLLTNYFGAMFPKFGYFFNFYMGLGQIYPHIYL 102
Cdd:pfam10323   1 FYGLSIVTLPLYFLILICLLKLRNRSKT-FKTTFYTLLLQHCIADIITLLNYYFGAMFPKIGWFRDFYFNYQHYYAAIYY 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32566073   103 YIAWSMGICQAMSVSVLATNRLSAMIFPE-HYRKIWKSNKLWIGVGIQFLPGLGIGCCTFFNTTEIYINGNGgiIPRFID 181
Cdd:pfam10323  80 NIAYYTLYIRCTGISLLSTNRYLAICFPIsRLTKIWQSARLWKIILIYWLPGLLISLVVLKNTDIYYDNEEN--MPVVAD 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32566073   182 KQMTSTFFKIGGSFLFLNCLYLIIAYFYLFYSLKKRNSRianfpVSKSKQIQKLREIRLFIMISITVAVQLTILIFFSLK 261
Cdd:pfam10323 158 KDVIQRFTLIALIFVFVTCIYCIIAYGALFFVIRKKNNK-----NSQTKSKSLKREVRLAFQVFILVLAFLIILIFYILS 232
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 32566073   262 LLKFFELNM-EEFYL--FYNALSDLFASINPYLLWIFSDSLRKYVYWKMGI 309
Cdd:pfam10323 233 NYFSQTLNTdPIFYLraLYPIASGLLSYINPYLLLIFNRDLRKQVRKMLKC 283
Srg pfam02118
Srg family chemoreceptor;
21-303 3.73e-05

Srg family chemoreceptor;


Pssm-ID: 396614  Cd Length: 270  Bit Score: 44.49  E-value: 3.73e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32566073    21 LLQIILVTVTFPFYIFLLAFIISAqlRNIDDLATPFFKLCISSSFIDLTTLLTNYFGA----MFPKFGYFFNFYMGLGQI 96
Cdd:pfam02118   2 IIQLSYLIPSFILMIFILITILVS--KKKYYRSNSFYRLYQMDLIVNILLYLNDWFFGrlflYVPPLCPFFLPFFKTPPI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32566073    97 YPHIYLYIAWSMGICQAMSVSVLATNRLSAMIFPEHYRKIWKSNKLWIGVGIQFLPGLGIgCCTFFNTTEIYINGNGGII 176
Cdd:pfam02118  80 FLTIYYYLYNYFLHAKFLSQILLSVNRMSCVLFPVTHEKFWSRYLKLVLIVIFIIPFSFI-WNILISRVYVNPVNGGFSI 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32566073   177 PRFIDKQMTSTFFKIGGsFLFLNCLYLIIAYFYLFYSLKKRNSRIANFPvskskqiqklreiRLFIMISITVAVQLTILI 256
Cdd:pfam02118 159 NYEKAVPWASTSLFQLI-YFILTLVFTIITTIVTSYKLKKLSKRLKSVE-------------RSLTIITIFISVVFLLVA 224
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 32566073   257 FFSLKLLKFFELNMEEFYLFYNAlSDLFASINPYLLWIFSDSLRKYV 303
Cdd:pfam02118 225 VWQVLNSFAFFISSFLLNLLFFA-SDLLTLSSPIILLIFDSNLRKHI 270
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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