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Conserved domains on  [gi|17539460|ref|NP_501145|]
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F-actin-capping protein subunit alpha [Caenorhabditis elegans]

Protein Classification

F-actin-capping protein subunit alpha( domain architecture ID 10472626)

F-actin-capping protein subunit alpha binds in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
F-actin_cap_A pfam01267
F-actin capping protein alpha subunit;
13-280 1.09e-133

F-actin capping protein alpha subunit;


:

Pssm-ID: 460142  Cd Length: 263  Bit Score: 378.82  E-value: 1.09e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17539460    13 ASDFIKHAPPGEFNEVFNSVRMLLENDDLLKNKCVNAIAQYNVGQFVPVKLDGVAKQTLITPYNDLGNGRFYDEVSKKSF 92
Cdd:pfam01267   1 ASSFILQAPPGELNEVVNDLRALLNDDSLLQEGIAPALEQYNEEQFTPVKLPGSSHQVIISEYNKLGDGRYFDPRSKKSF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17539460    93 KYDHVRKEAADLQPHPAESGItEQWRQALQTQLDIYIDDHYaKSGTGVVFAR---NGVFTICIESHQFQPKNFCNGRWRS 169
Cdd:pfam01267  81 KFDHLKQEASDVEPYELESEL-EELRKALEKALEKYVKEHY-PSGVCTVYPKteeDGKLAICIVANKYNPSNFWNGRWRS 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17539460   170 EWNVPvgdgkSGSQEMKGKILSQVHYYEDGNVQLFSEKEPVLKVNVSaDFDKTAKEIIHAISEEETIYQNAVQENYANMS 249
Cdd:pfam01267 159 EYTVD-----PSSGTLTGKIKVQVHYYEDGNVQLNTSKDVSESLPVS-DPSQTASDIVKAIEEAENKYQTALNESYQNLS 232
                         250       260       270
                  ....*....|....*....|....*....|.
gi 17539460   250 DTTFKALRRQLPVTRAKMDWNKAQTYRIGQE 280
Cdd:pfam01267 233 ETTFKALRRQLPVTRSKIDWGKIGNYRLGQD 263
 
Name Accession Description Interval E-value
F-actin_cap_A pfam01267
F-actin capping protein alpha subunit;
13-280 1.09e-133

F-actin capping protein alpha subunit;


Pssm-ID: 460142  Cd Length: 263  Bit Score: 378.82  E-value: 1.09e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17539460    13 ASDFIKHAPPGEFNEVFNSVRMLLENDDLLKNKCVNAIAQYNVGQFVPVKLDGVAKQTLITPYNDLGNGRFYDEVSKKSF 92
Cdd:pfam01267   1 ASSFILQAPPGELNEVVNDLRALLNDDSLLQEGIAPALEQYNEEQFTPVKLPGSSHQVIISEYNKLGDGRYFDPRSKKSF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17539460    93 KYDHVRKEAADLQPHPAESGItEQWRQALQTQLDIYIDDHYaKSGTGVVFAR---NGVFTICIESHQFQPKNFCNGRWRS 169
Cdd:pfam01267  81 KFDHLKQEASDVEPYELESEL-EELRKALEKALEKYVKEHY-PSGVCTVYPKteeDGKLAICIVANKYNPSNFWNGRWRS 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17539460   170 EWNVPvgdgkSGSQEMKGKILSQVHYYEDGNVQLFSEKEPVLKVNVSaDFDKTAKEIIHAISEEETIYQNAVQENYANMS 249
Cdd:pfam01267 159 EYTVD-----PSSGTLTGKIKVQVHYYEDGNVQLNTSKDVSESLPVS-DPSQTASDIVKAIEEAENKYQTALNESYQNLS 232
                         250       260       270
                  ....*....|....*....|....*....|.
gi 17539460   250 DTTFKALRRQLPVTRAKMDWNKAQTYRIGQE 280
Cdd:pfam01267 233 ETTFKALRRQLPVTRSKIDWGKIGNYRLGQD 263
 
Name Accession Description Interval E-value
F-actin_cap_A pfam01267
F-actin capping protein alpha subunit;
13-280 1.09e-133

F-actin capping protein alpha subunit;


Pssm-ID: 460142  Cd Length: 263  Bit Score: 378.82  E-value: 1.09e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17539460    13 ASDFIKHAPPGEFNEVFNSVRMLLENDDLLKNKCVNAIAQYNVGQFVPVKLDGVAKQTLITPYNDLGNGRFYDEVSKKSF 92
Cdd:pfam01267   1 ASSFILQAPPGELNEVVNDLRALLNDDSLLQEGIAPALEQYNEEQFTPVKLPGSSHQVIISEYNKLGDGRYFDPRSKKSF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17539460    93 KYDHVRKEAADLQPHPAESGItEQWRQALQTQLDIYIDDHYaKSGTGVVFAR---NGVFTICIESHQFQPKNFCNGRWRS 169
Cdd:pfam01267  81 KFDHLKQEASDVEPYELESEL-EELRKALEKALEKYVKEHY-PSGVCTVYPKteeDGKLAICIVANKYNPSNFWNGRWRS 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17539460   170 EWNVPvgdgkSGSQEMKGKILSQVHYYEDGNVQLFSEKEPVLKVNVSaDFDKTAKEIIHAISEEETIYQNAVQENYANMS 249
Cdd:pfam01267 159 EYTVD-----PSSGTLTGKIKVQVHYYEDGNVQLNTSKDVSESLPVS-DPSQTASDIVKAIEEAENKYQTALNESYQNLS 232
                         250       260       270
                  ....*....|....*....|....*....|.
gi 17539460   250 DTTFKALRRQLPVTRAKMDWNKAQTYRIGQE 280
Cdd:pfam01267 233 ETTFKALRRQLPVTRSKIDWGKIGNYRLGQD 263
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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