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Conserved domains on  [gi|17555674|ref|NP_499685|]
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Small ribosomal subunit protein uS10m [Caenorhabditis elegans]

Protein Classification

uS10/mL48 family ribosomal protein( domain architecture ID 10448432)

uS10/mL48 family ribosomal protein similar to fungal mitochondrial 37S ribosomal protein S10, human mitochondrial 39S ribosomal protein L48 and 28S ribosomal protein S10, and archaeal 30S ribosomal protein S10

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S10 pfam00338
Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes ...
 45-141 3.38e-27

Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.


:

Pssm-ID: 459769  Cd Length: 98  Bit Score: 97.56  E-value: 3.38e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555674    45 EIEYRGHDKAVLKSYTSFLQQVCQHLEIPQGRLEVLPYIRWVQPALRSKFVHKKYKLHYETRTHISKLEILNVTGSTAST 124
Cdd:pfam00338   1 RIKLKSYDHALLDSYAKFIVRAAKRLGIKVSGPIPLPTKRLRVTVLKSPHVHKKSREQFEMRTHKRLIDIKDATPETVDA 80

                          90
                  ....*....|....*..
gi 17555674   125 FLEYIQRNIPEGVGMRV 141
Cdd:pfam00338  81 LLRYLQLNLPEGVDVEV 97
 
Name Accession Description Interval E-value
Ribosomal_S10 pfam00338
Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes ...
 45-141 3.38e-27

Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.


Pssm-ID: 459769  Cd Length: 98  Bit Score: 97.56  E-value: 3.38e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555674    45 EIEYRGHDKAVLKSYTSFLQQVCQHLEIPQGRLEVLPYIRWVQPALRSKFVHKKYKLHYETRTHISKLEILNVTGSTAST 124
Cdd:pfam00338   1 RIKLKSYDHALLDSYAKFIVRAAKRLGIKVSGPIPLPTKRLRVTVLKSPHVHKKSREQFEMRTHKRLIDIKDATPETVDA 80

                          90
                  ....*....|....*..
gi 17555674   125 FLEYIQRNIPEGVGMRV 141
Cdd:pfam00338  81 LLRYLQLNLPEGVDVEV 97
rpsJ_bact TIGR01049
ribosomal protein S10, bacterial/organelle; This model describes bacterial 30S ribosomal ...
 44-141 1.13e-05

ribosomal protein S10, bacterial/organelle; This model describes bacterial 30S ribosomal protein S10. In species that have a transcription antitermination complex, or N utilization substance, with NusA, NusB, NusG, and NusE, this ribosomal protein is responsible for NusE activity. Included in the family are one member each from Saccharomyces cerevisiae and Schizosaccharomyces pombe. These proteins lack an N-terminal mitochondrial transit peptide but contain additional sequence C-terminal to the ribosomal S10 protein region. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130121  Cd Length: 99  Bit Score: 41.85  E-value: 1.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555674    44 VEIEYRGHDKAVLKSYTSFLQQVCQHLEIPQGRLEVLPYIRWVQPALRSKFVHKKYKLHYETRTHISKLEILNVTGSTAS 123
Cdd:TIGR01049   3 IRIKLKSYDHRLLDQSTKKIVETAKRTGAQVKGPIPLPTKKERYTVLRSPHVNKDSREQFEIRTHKRLIDIIDPNPKTID 82

                          90
                  ....*....|....*...
gi 17555674   124 TFLEYiqrNIPEGVGMRV 141
Cdd:TIGR01049  83 ALMKL---DLPAGVDIEI 97
 
Name Accession Description Interval E-value
Ribosomal_S10 pfam00338
Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes ...
 45-141 3.38e-27

Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.


Pssm-ID: 459769  Cd Length: 98  Bit Score: 97.56  E-value: 3.38e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555674    45 EIEYRGHDKAVLKSYTSFLQQVCQHLEIPQGRLEVLPYIRWVQPALRSKFVHKKYKLHYETRTHISKLEILNVTGSTAST 124
Cdd:pfam00338   1 RIKLKSYDHALLDSYAKFIVRAAKRLGIKVSGPIPLPTKRLRVTVLKSPHVHKKSREQFEMRTHKRLIDIKDATPETVDA 80

                          90
                  ....*....|....*..
gi 17555674   125 FLEYIQRNIPEGVGMRV 141
Cdd:pfam00338  81 LLRYLQLNLPEGVDVEV 97
rpsJ_bact TIGR01049
ribosomal protein S10, bacterial/organelle; This model describes bacterial 30S ribosomal ...
 44-141 1.13e-05

ribosomal protein S10, bacterial/organelle; This model describes bacterial 30S ribosomal protein S10. In species that have a transcription antitermination complex, or N utilization substance, with NusA, NusB, NusG, and NusE, this ribosomal protein is responsible for NusE activity. Included in the family are one member each from Saccharomyces cerevisiae and Schizosaccharomyces pombe. These proteins lack an N-terminal mitochondrial transit peptide but contain additional sequence C-terminal to the ribosomal S10 protein region. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130121  Cd Length: 99  Bit Score: 41.85  E-value: 1.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555674    44 VEIEYRGHDKAVLKSYTSFLQQVCQHLEIPQGRLEVLPYIRWVQPALRSKFVHKKYKLHYETRTHISKLEILNVTGSTAS 123
Cdd:TIGR01049   3 IRIKLKSYDHRLLDQSTKKIVETAKRTGAQVKGPIPLPTKKERYTVLRSPHVNKDSREQFEIRTHKRLIDIIDPNPKTID 82

                          90
                  ....*....|....*...
gi 17555674   124 TFLEYiqrNIPEGVGMRV 141
Cdd:TIGR01049  83 ALMKL---DLPAGVDIEI 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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