|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
169-427 |
9.32e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 9.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 169 KLRDEISKKDSNMKVIKEELEAARKAQSQENLDDLEKTVQNLKVEIEKLKHERFDFENRMKIAEKRVESLSSNLSESKQQ 248
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 249 GDMLRKQLIQAKDDKHIIQQYEVKLQTSTAELERRLRESEHDVERLRTSQLEMATKFEEA-----------SRENTDLLS 317
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAeaelaeaeealLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 318 KIDILQDQLSLEEDRRKLCEEQIDRLKGVESFVESSSHRIEETEKERETAEEDREQAELEAAEYREQVEKMLKLTQELTE 397
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
250 260 270
....*....|....*....|....*....|
gi 17556076 398 RNMELQRKLKDEEGKNTSHNSTIEKLQVEL 427
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEEL 486
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
93-393 |
8.97e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 8.97e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 93 KKELDAQVRRIRELEVQLKTTTDRGLAQEAHFNVTTKEMSQKfNLALQQATKKAEQCDKEKNEAvvkyamrEGEMMKLRD 172
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAEL-EAELEELRLELEELELELEEA-------QAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 173 EISKKDSNMKVIKEELEAA--RKAQSQENLDDLEKTVQNLKVEIEKLKHERFDFENRMKIAEKRVESLSSNLSESKQQGD 250
Cdd:COG1196 296 ELARLEQDIARLEERRRELeeRLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 251 MLRKQLIQAKDDKHIIQQYEVKLQTSTAELERRLRESEHDVERLRTSQLEMATKFEEASRENTDLLSKIDILQDQLSLEE 330
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17556076 331 DRRKLCEEQIDRLKGVESFVESSSHRIEETEKERETAEEDREQAELEAAEYREQVEKMLKLTQ 393
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
170-492 |
1.40e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 1.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 170 LRDEISKKDSNMKVIKEELEAARKAQS-QENLDDLEKTVqnLKVEIEKLKHERFDFENRMKIAEKRVESLSSNLSESKQQ 248
Cdd:COG1196 191 LEDILGELERQLEPLERQAEKAERYRElKEELKELEAEL--LLLKLRELEAELEELEAELEELEAELEELEAELAELEAE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 249 GDMLRKQLIQAKDDKHIIQQYEVKLQTSTAELERRLRESEHDVERLRTSQLEMATKFEEASRENTDLLSKIDILQDQLSL 328
Cdd:COG1196 269 LEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 329 EEDRRKLCEEQIdrlkgvesfvessshriEETEKERETAEEDREQAELEAAEYREQVEKMLKLTQELTERNMELQRKLKD 408
Cdd:COG1196 349 AEEELEEAEAEL-----------------AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 409 EEGKNTSHNSTIEKLQVELTTSLELCKSFEETNLKISEELENLKTEMQ---KPVTLESLEENFYRDKYDEASRKLEQTEA 485
Cdd:COG1196 412 LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEallELLAELLEEAALLEAALAELLEELAEAAA 491
|
....*..
gi 17556076 486 KLAEEKN 492
Cdd:COG1196 492 RLLLLLE 498
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
48-638 |
1.44e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.70 E-value: 1.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 48 KCNAVQEQEFERLESQNAEYREKLLRTIRERDLNEELLKNVQNQHKKELDAQVRRIRELEV--------QLKTTTDRGLA 119
Cdd:PTZ00121 1225 KAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKaeekkkadEAKKAEEKKKA 1304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 120 QEAHFNVTTKEMSQKFNLALQQATKKAEQCDKEKNEAVVKYAMREGEMMKLRDEISKKDSNMKVIKEELE--------AA 191
Cdd:PTZ00121 1305 DEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEeakkkadaAK 1384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 192 RKAQSQENLDDLEKTVQNLKVEIEKLKHerfdfenrmKIAEKRVESLSSNLSESKQQGDMLRKQLIQAKDDKHIIQQYEV 271
Cdd:PTZ00121 1385 KKAEEKKKADEAKKKAEEDKKKADELKK---------AAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE 1455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 272 KLQTST----AELERRLRESEHDVERLRTSQlEMATKFEEASRENTDLLSKidiLQDQLSLEEDRRKLCEEQIDRLKGVE 347
Cdd:PTZ00121 1456 AKKAEEakkkAEEAKKADEAKKKAEEAKKAD-EAKKKAEEAKKKADEAKKA---AEAKKKADEAKKAEEAKKADEAKKAE 1531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 348 SFVESSSHRIEEtekERETAEEDREQAELEAAEYREQVEKMLKltqELTERNMELQRKLKDEEGKNTSHNSTIEKLQVEL 427
Cdd:PTZ00121 1532 EAKKADEAKKAE---EKKKADELKKAEELKKAEEKKKAEEAKK---AEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEK 1605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 428 TTSLELCKSFEETNLKiSEELENLKTEMQKPVTLESLEENFYRdKYDEASRKLEQTEAKLAEEKNNFSAFKKKTsatlKE 507
Cdd:PTZ00121 1606 KMKAEEAKKAEEAKIK-AEELKKAEEEKKKVEQLKKKEAEEKK-KAEELKKAEEENKIKAAEEAKKAEEDKKKA----EE 1679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 508 LKSELSGYRKNNGAGDSGA--ALGAHVLAPPTSSDPSMSSRSRASSITSIDRVTSTSREEEVSSAAGEEAKRIENEEQKL 585
Cdd:PTZ00121 1680 AKKAEEDEKKAAEALKKEAeeAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKI 1759
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 17556076 586 NMQQIMIDKIVILQRKLARRTEKCEFLEEHVRQCLEELQKKTKIIQHFALREE 638
Cdd:PTZ00121 1760 AHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIE 1812
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
76-345 |
6.15e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 6.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 76 RERDLNEELLKNVQNQHKKELDAQVRRIRELEVQLKTTTDRGLAQEAHFNVTTK---EMSQKFNLA---LQQATKKAEQC 149
Cdd:TIGR02168 221 ELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLevsELEEEIEELqkeLYALANEISRL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 150 DKEKNEAVVKYAMREGEMMKLRDEISKKDSnmkviKEELEAARKAQSQENLDDLEKTVQNLKVEIEKLKHERFDFENRMK 229
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEELEAQLEELES-----KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 230 IAEKRVESLSSNLSESKQQGDMLRKQLIQAKDDKHIIQQYEVKLQTSTAELERRLRESEHDverlrtsqlEMATKFEEAS 309
Cdd:TIGR02168 376 ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELK---------ELQAELEELE 446
|
250 260 270
....*....|....*....|....*....|....*.
gi 17556076 310 RENTDLLSKIDILQDQLSLEEDRRKLCEEQIDRLKG 345
Cdd:TIGR02168 447 EELEELQEELERLEEALEELREELEEAEQALDAAER 482
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
252-500 |
1.08e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 1.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 252 LRKQLIQAKDDKHIIQQYEVKLQTSTAELERRLRESEHDVERLRTSQLEMATKFEEASRENTDLLSKIDILQDQLSLEED 331
Cdd:TIGR02168 696 LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE 775
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 332 RRKLCEEQIDRLKGVesfVESSSHRIEETEKERETAEEDREQAELEAAEYREQVEKMLKLTQELTERNMELQRKLKDEEG 411
Cdd:TIGR02168 776 ELAEAEAEIEELEAQ---IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE 852
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 412 KNTSHNSTIEKLQVELTTSLELCKSFEETNLKISEELENLKTEMQK-PVTLESLEENF--YRDKYDEASRKLEQTEAKLA 488
Cdd:TIGR02168 853 DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEElSEELRELESKRseLRRELEELREKLAQLELRLE 932
|
250
....*....|..
gi 17556076 489 EEKNNFSAFKKK 500
Cdd:TIGR02168 933 GLEVRIDNLQER 944
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
73-419 |
1.37e-08 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 58.21 E-value: 1.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 73 RTIRERDLNEELLKNVQN---QHKKELDAQVRRIRELEVQLKT---TTDRGLAQEAHFNVTTKEMSQKFNLALQQATKKA 146
Cdd:pfam17380 282 KAVSERQQQEKFEKMEQErlrQEKEEKAREVERRRKLEEAEKArqaEMDRQAAIYAEQERMAMERERELERIRQEERKRE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 147 EQCDKEKNEAVVKYAMREGEmmklRDEISKKDSNMKViKEELEAARKAQSQEnlDDLEKTVQNLKVEIEKLKHERfdfEN 226
Cdd:pfam17380 362 LERIRQEEIAMEISRMRELE----RLQMERQQKNERV-RQELEAARKVKILE--EERQRKIQQQKVEMEQIRAEQ---EE 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 227 RMKIAEKRVESLSSNLSESKQQGDMLRKQLIQakddkhiiqqyevklqtstaelerRLRESEHDVERLRTSQLEMATKFE 306
Cdd:pfam17380 432 ARQREVRRLEEERAREMERVRLEEQERQQQVE------------------------RLRQQEEERKRKKLELEKEKRDRK 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 307 EASRENTDLLSKidilqdqlSLEEDRRKLCEEQIDRlKGVESFVESSSHRIEETEKERETAEEDREQAELEaaEYREQVE 386
Cdd:pfam17380 488 RAEEQRRKILEK--------ELEERKQAMIEEERKR-KLLEKEMEERQKAIYEEERRREAEEERRKQQEME--ERRRIQE 556
|
330 340 350
....*....|....*....|....*....|....*...
gi 17556076 387 KMLKLTQELT-----ERNMELQRKLKDEEGKNTSHNST 419
Cdd:pfam17380 557 QMRKATEERSrleamEREREMMRQIVESEKARAEYEAT 594
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
54-386 |
1.71e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 1.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 54 EQEFERLESQNAEYREKLLRTIRERDLNEELLKNVQnqhkKELDAQVRRIRELEVQLKTttdrglAQEAHFNVTtkEMSQ 133
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLR----KELEELSRQISALRKDLAR------LEAEVEQLE--ERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 134 KFNLALQQATKKAEQCDKEKNEAVVKYAMREGEMMKLRDEISKKDSNMKVIKEELEAARKAQSQEN--LDDLEKTVQNLK 211
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNeeAANLRERLESLE 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 212 VEIEKLKHERFDFENRMKIAEKRVESLSSNLSESKQQGDMLRKQLIQAKDDKHIIQQYEVKLQTSTAELERRLRESEHDV 291
Cdd:TIGR02168 831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 292 ERLRTSQLEMATKFEEASRENTDLLSKIDILQDQLSleEDRRKLCEEQIDRLKGVESFVESSSHRIEETEKERE------ 365
Cdd:TIGR02168 911 SELRRELEELREKLAQLELRLEGLEVRIDNLQERLS--EEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKelgpvn 988
|
330 340
....*....|....*....|..
gi 17556076 366 -TAEEDREQAELEAAEYREQVE 386
Cdd:TIGR02168 989 lAAIEEYEELKERYDFLTAQKE 1010
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
161-510 |
2.01e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.77 E-value: 2.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 161 AMREGEMMKLRDEIS---KKDSNMKVIKEELEAARKAQSQENLDDLEKTVQNLKVEIEKLKHERFDfENRMKIAEKRVES 237
Cdd:TIGR02169 149 SMSPVERRKIIDEIAgvaEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQ-ALLKEKREYEGYE 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 238 LSSNLSESKQQGDMLRKQLIQAKDDKHIIQQYEVKLQTSTAELERRLRESEHDVERL-RTSQLEMATKFEEASRENTDLL 316
Cdd:TIGR02169 228 LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLE 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 317 SKIDILQDQLSLEEDRRKLCEEQIDRLKGvesfvessshRIEETEKERETAEEDREQAELEAAEYREQVEKMLKLTQELT 396
Cdd:TIGR02169 308 RSIAEKERELEDAEERLAKLEAEIDKLLA----------EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVD 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 397 ERNMELQRKLKDEEGKNTSHNSTIEKLQVELTTSLELCKSFEETNLKISEELENLKTEMQKpvtLESLEENFyRDKYDEA 476
Cdd:TIGR02169 378 KEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE---LEEEKEDK-ALEIKKQ 453
|
330 340 350
....*....|....*....|....*....|....
gi 17556076 477 SRKLEQTEAKLAEEKNNFSAFKKKTSATLKELKS 510
Cdd:TIGR02169 454 EWKLEQLAADLSKYEQELYDLKEEYDRVEKELSK 487
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
54-407 |
5.30e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.61 E-value: 5.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 54 EQEFERLESQNAEYREKLLRTIRERDLNEELLKNVQNQHKKELDAQVRRIRELEVQLKTTTDRGLAQEAHfnvttkemsq 133
Cdd:TIGR02169 183 EENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEE---------- 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 134 kfnlaLQQATKKAEQCDKEKNEAVVKYamregemmklrdeiskkdsnmkvikEELEAARKAQSQENLDDLEKTVQNLKVE 213
Cdd:TIGR02169 253 -----LEKLTEEISELEKRLEEIEQLL-------------------------EELNKKIKDLGEEEQLRVKEKIGELEAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 214 IEKLKHERFDFENRMKIAEKRVESLSSNLSESKQQGDMLRKQLIQAKDDKHIIQQYEVKLQTSTAELERRLRESEHDVER 293
Cdd:TIGR02169 303 IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 294 LRTSQLEMATKFEEASRENTDLLSKIDILQDQLSLEEDRRKLCEEQIDRLKG----VESFVESSSHRIEETEKERETAEE 369
Cdd:TIGR02169 383 TRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAkineLEEEKEDKALEIKKQEWKLEQLAA 462
|
330 340 350
....*....|....*....|....*....|....*...
gi 17556076 370 DREQAEleaAEYREQVEKMLKLTQELTERNMELQRKLK 407
Cdd:TIGR02169 463 DLSKYE---QELYDLKEEYDRVEKELSKLQRELAEAEA 497
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
189-524 |
1.11e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 1.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 189 EAARKAQSQENLDDLEKTVQNLKVEIEKLKHERFDFENRMKIAEKRVESLSSNLSESKQQGDMLRKQLIQAKDDKHIIQQ 268
Cdd:TIGR02169 672 EPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 269 YEVKLQTSTAELERRLRESEHDVERLRTsqlematkfEEASRENTDLLSKIDILQDQLSLEEDRRKLCEEQIDRLkgvES 348
Cdd:TIGR02169 752 EIENVKSELKELEARIEELEEDLHKLEE---------ALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREI---EQ 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 349 FVESSSHRIEETEKERETAEEDREQAELEAAEYREQVEKMLKLTQELTERNMELQRKLKDeegkntshnstieklqvelt 428
Cdd:TIGR02169 820 KLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRD-------------------- 879
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 429 tslelcksfeetnlkISEELENLKTEmqkpvtlesleenfyRDKYDEASRKLEQTEAKLAEEKNNFSAFKKKTSATLKEL 508
Cdd:TIGR02169 880 ---------------LESRLGDLKKE---------------RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEAL 929
|
330
....*....|....*.
gi 17556076 509 KSELSGYRKNNGAGDS 524
Cdd:TIGR02169 930 EEELSEIEDPKGEDEE 945
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
184-498 |
1.84e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 1.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 184 IKEELEAARKAQSQENLDDLEKTVQNLKVEIEKLKHERFDFENRMKIAEKRVESlssnlseskqqgdmLRKQLIQAKDDK 263
Cdd:TIGR02168 218 LKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEE--------------LRLEVSELEEEI 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 264 HIIQQyevKLQTSTAELERRLRESEHDVERLRTSQlemaTKFEEASRENTDLLSKIDILQDQLSLEEDRRKLCEEQIDRL 343
Cdd:TIGR02168 284 EELQK---ELYALANEISRLEQQKQILRERLANLE----RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 344 kgvESFVESSSHRIEETEKERETAEEDREQAELEAAEYREQVEKMLKLTQELTERNMELQRKLKDEEGKNTSHNSTIEKL 423
Cdd:TIGR02168 357 ---EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA 433
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17556076 424 QV-ELTTSLELCKSFEETNLKISEELENLKTEMQKPVTLESLEENFYRDKYDEASRKLEQTEAKLAEEKNNFSAFK 498
Cdd:TIGR02168 434 ELkELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVK 509
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
252-517 |
3.43e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 3.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 252 LRKQ-------------------------LIQAKDDKHIIQQYEVKLQTSTAELERRLRESEHDVERLRTSQLEMATKFE 306
Cdd:TIGR02168 205 LERQaekaerykelkaelrelelallvlrLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 307 EASRENTDLLSKIDILQDQLSLEEDRRKLCEEQIDRLKGVESFVESsshRIEETEKERETAEEDREQAELEAAEYREQVE 386
Cdd:TIGR02168 285 ELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELES---KLDELAEELAELEEKLEELKEELESLEAELE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 387 KMLKLTQELTERNMELQRKLKDEEGKNTSHNSTIEKLQVELTTSLELCKSFEETNLKISEELENLKTEMQKPvtleslee 466
Cdd:TIGR02168 362 ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA-------- 433
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 17556076 467 nfYRDKYDEASRKLEQTEAKLAEEKNNFSAFKKKTSATLKELKSELSGYRK 517
Cdd:TIGR02168 434 --ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAER 482
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
87-511 |
3.53e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.42 E-value: 3.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 87 NVQNQHKKELDAQVRRI-RELEVQLKTTTDRGLAQEAHFNVTTKEMSQKFNLALQQATKKAEQCDKEkneavvkyamREG 165
Cdd:pfam15921 209 SMSTMHFRSLGSAISKIlRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISE----------HEV 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 166 EMMKLRDEISKKDSNMKVIKEELEAARKAQSQEN------LDDLEKTVQNLKVEIEKLKHERFD----FENRMKIAEKRV 235
Cdd:pfam15921 279 EITGLTEKASSARSQANSIQSQLEIIQEQARNQNsmymrqLSDLESTVSQLRSELREAKRMYEDkieeLEKQLVLANSEL 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 236 ESLSSNLSESKQQGDMLRKQLIQAKDDKHiIQQYEVKLQT---------------STAELERRLRESEHDVER----LRT 296
Cdd:pfam15921 359 TEARTERDQFSQESGNLDDQLQKLLADLH-KREKELSLEKeqnkrlwdrdtgnsiTIDHLRRELDDRNMEVQRlealLKA 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 297 SQLEMATKFEE---ASRENTDLLSKIDILQDQL-SLEEDRRKLCEEqidrLKGVESFVESSSHRIEETEKERETAEEDRE 372
Cdd:pfam15921 438 MKSECQGQMERqmaAIQGKNESLEKVSSLTAQLeSTKEMLRKVVEE----LTAKKMTLESSERTVSDLTASLQEKERAIE 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 373 QAELEAAEYREQVEKMLKLTQELTERNMELQRKLKDEEG---KNTSHNSTIEKLQVELTTSLELCKSFEETNLKISEELE 449
Cdd:pfam15921 514 ATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEAlklQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKA 593
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17556076 450 NLKTEMQKPvTLESLEENFYRDKYDEASRKLEQTEAKLAEEKNNFSAFKKKTSATLKELKSE 511
Cdd:pfam15921 594 QLEKEINDR-RLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQE 654
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
55-489 |
4.03e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.96 E-value: 4.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 55 QEFERLESQNAEYREKLLRTIRERDlneellknvqnQHKKELDAQVRRIRELEVQLktttdRGLAQEAHFNVTTKEmsqK 134
Cdd:PRK02224 251 EELETLEAEIEDLRETIAETERERE-----------ELAEEVRDLRERLEELEEER-----DDLLAEAGLDDADAE---A 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 135 FNLALQQATKKAEQCDKEKNEAVVKYAMREGEMMKLRDEISKKDSnmkvikeeleaaRKAQSQENLDDLEKTVQNLKVEI 214
Cdd:PRK02224 312 VEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEE------------RAEELREEAAELESELEEAREAV 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 215 EKLKHERFDFENRMKIAEKRVESLSSNLSESKQQGDMLRkqliqakDDKHIIQQYEVKLQTSTAELERRLRESE------ 288
Cdd:PRK02224 380 EDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELR-------EERDELREREAELEATLRTARERVEEAEalleag 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 289 ------HDVERlrTSQLEMATKFEEASRENTDLLSKIDILQDQLSLEEDRRKLCEEQIDRLKGVESFVESSSHRIEEtek 362
Cdd:PRK02224 453 kcpecgQPVEG--SPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAE--- 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 363 ERETAEEDREQAEL---EAAEYREQVEKMLKLTQELTERNMELQRKLKDEEGKNTSHNSTIEKLQvELTTSLELCKSFEE 439
Cdd:PRK02224 528 RRETIEEKRERAEElreRAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAED 606
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 17556076 440 TNLKISEELENLKT-EMQKPVTLES-------LEENFYRDKYDEASRKLEQTEAKLAE 489
Cdd:PRK02224 607 EIERLREKREALAElNDERRERLAEkrerkreLEAEFDEARIEEAREDKERAEEYLEQ 664
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
53-410 |
4.23e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.24 E-value: 4.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 53 QEQEFERLESQNAEYREKLLRTIRERDLNEELLKNVQnQHKKELDAQVRRIRELEVQLKTTTDRGLAQEAhfnvttKEMS 132
Cdd:COG1196 412 LLERLERLEEELEELEEALAELEEEEEEEEEALEEAA-EEEAELEEEEEALLELLAELLEEAALLEAALA------ELLE 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 133 QKFNLALQQATKKAEQCDKEKNEAVVKYAMREGEMMKLRDEISKKDSNMKVIKEELEAARKAQSQENLDDLEKTVQNLKV 212
Cdd:COG1196 485 ELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIE 564
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 213 EIEKLKHERFDFENRMKIAEKRVESLSSNLSESKQQGDMLRKQLIQAKDDKHIIQQYEVKLQTSTAELERRLRESEHDVE 292
Cdd:COG1196 565 YLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAG 644
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 293 RLRTSQLEMATKFEEASREntdllskIDILQDQLSLEEDRRKLCEEQIDRLKGVESFVESSSHRIEETEKERETAEEDRE 372
Cdd:COG1196 645 RLREVTLEGEGGSAGGSLT-------GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERL 717
|
330 340 350
....*....|....*....|....*....|....*...
gi 17556076 373 QAELEAAEYREQVEKMLKLTQELTERNMELQRKLKDEE 410
Cdd:COG1196 718 EEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE 755
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
145-490 |
7.26e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.19 E-value: 7.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 145 KAEQCDKEKNEAVVKYAMREGEMMKLRDEISKKDSNMKVIKEELEAA-----RKAQSQENLDDLEKTVQNLKVEIEKLKH 219
Cdd:PRK02224 193 KAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEAdevleEHEERREELETLEAEIEDLRETIAETER 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 220 ERFDFENRMKIAEKRVESLSSNLSeskqqgDMLRKQLIQAKDDKHIIQQYEvKLQTSTAELERRLRESEHDVERLRTSQL 299
Cdd:PRK02224 273 EREELAEEVRDLRERLEELEEERD------DLLAEAGLDDADAEAVEARRE-ELEDRDEELRDRLEECRVAAQAHNEEAE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 300 EMATKFEEASRENTDLLSKIDILQDQlsLEEDRRKLcEEQIDRLKGVESFVESSSHRIEETEKERETAEEDREQAELEAA 379
Cdd:PRK02224 346 SLREDADDLEERAEELREEAAELESE--LEEAREAV-EDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERD 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 380 EYREQVEKMLKLTQELTERNMELQRKLkdEEGK---------NTSHNSTIEKLQVELTTSLELCKSFEETNLKISEELEN 450
Cdd:PRK02224 423 ELREREAELEATLRTARERVEEAEALL--EAGKcpecgqpveGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLER 500
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 17556076 451 LKTEMQKPVTLESLEEnfyrdKYDEASRKLEQTEAKLAEE 490
Cdd:PRK02224 501 AEDLVEAEDRIERLEE-----RREDLEELIAERRETIEEK 535
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
53-332 |
7.29e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 7.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 53 QEQEFERLESQNAEyREKLLRTIRERDLNEELLKNVQNQHKKELDAQVRRIRElEVQLKTTTDRGLAQEAhfnvttkems 132
Cdd:COG1196 251 LEAELEELEAELAE-LEAELEELRLELEELELELEEAQAEEYELLAELARLEQ-DIARLEERRRELEERL---------- 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 133 QKFNLALQQATKKAEQCDKEKNEAVVKYAMREGEMMKLRDEISKkdsnmkvikeelEAARKAQSQENLDDLEKTVQNLKV 212
Cdd:COG1196 319 EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE------------AEEALLEAEAELAEAEEELEELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 213 EIEKLKHERFDFENRMKIAEKRVESLSSNLSESKQQGDMLRKQLIQAKDDKHIIQQYEVKLQTSTAELERRLRESEHDVE 292
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA 466
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 17556076 293 RLRTSQLEMATKFEEASRENTDLLSKIDILQDQLSLEEDR 332
Cdd:COG1196 467 ELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF 506
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
31-626 |
7.98e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 7.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 31 NEDDVIPTTAVENSLYSKCNAVQEQEFERLESQNAEYREKLLRTIRERDLNEELLKNVQNQHKKELDAQVRRIRELEVQL 110
Cdd:PTZ00121 1067 GQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEAR 1146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 111 KTTTDRGLaqeahfnvttkEMSQKFNLALQQATKKAEQCDKEKNEAVVKYAMREGEMMKLRDEISKKDSNMKVIKE-ELE 189
Cdd:PTZ00121 1147 KAEDAKRV-----------EIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEErKAE 1215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 190 AARKAQSQENLDDLEKTVQNLKVEIEKLKHERF-DFENRMKIAEKRVESLSSNLSESK----QQGDMLRK--QLIQAKDD 262
Cdd:PTZ00121 1216 EARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEErNNEEIRKFEEARMAHFARRQAAIKaeeaRKADELKKaeEKKKADEA 1295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 263 KHIIQQYEVKLQTSTAELERRLRESEHDVERLRTSQLEMATKFEEASRENTDLLSKIDILQDQLSLEEDRRKLCEEQIDR 342
Cdd:PTZ00121 1296 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE 1375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 343 LKGVESFVESSSHRIEETEKERETAEEDREQAEL------------EAAEYREQVEKMLKLTQELTERNMELQRKLKDEE 410
Cdd:PTZ00121 1376 AKKKADAAKKKAEEKKKADEAKKKAEEDKKKADElkkaaaakkkadEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE 1455
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 411 GKNTSH----------NSTIEKLQVELTTSLELCKSFEETNLKiSEELENLKTEMQKPVTLESLEENFYRDKYDEASRKL 480
Cdd:PTZ00121 1456 AKKAEEakkkaeeakkADEAKKKAEEAKKADEAKKKAEEAKKK-ADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK 1534
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 481 EQTEAKLAEEKNNFSAFKK-----------KTSATLKELKSELSGYRKNNGAGDSGAALGAHVLAPPTSSDPSMSSRSRA 549
Cdd:PTZ00121 1535 KADEAKKAEEKKKADELKKaeelkkaeekkKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKK 1614
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17556076 550 SSITSIdRVTSTSREEEVSSAAGEEAKRIENEEQKLNMQQIMIDKIVILQRKLARRTEKCEFLEEHVRQCLEELQKK 626
Cdd:PTZ00121 1615 AEEAKI-KAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA 1690
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
279-452 |
6.19e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 6.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 279 ELERRLRESEHDVERLRtsQLEMATKFEEASRENTDLLSKIDILQDQLSLEEDRRKLCEEQIDRLKGVESFVE-----SS 353
Cdd:COG4913 259 ELAERYAAARERLAELE--YLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEaqirgNG 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 354 SHRIEETEKERETAEEDREQAELEAAEYREQVeKMLKLTQELTERNM-ELQRKLKDEEGKNTSHNSTIEKLQVELTTSL- 431
Cdd:COG4913 337 GDRLEQLEREIERLERELEERERRRARLEALL-AALGLPLPASAEEFaALRAEAAALLEALEEELEALEEALAEAEAALr 415
|
170 180
....*....|....*....|.
gi 17556076 432 ELCKSFEEtnlkISEELENLK 452
Cdd:COG4913 416 DLRRELRE----LEAEIASLE 432
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
59-512 |
7.52e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 7.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 59 RLESQNAEYREKLLRTIRERDLNEELLKNVQNQHKKELDAQVR----RIRELEVQLKTTTDR-----GLAQEAHFNVTTK 129
Cdd:PRK03918 220 REELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIReleeRIEELKKEIEELEEKvkelkELKEKAEEYIKLS 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 130 EMSQKFNLALQQATKKAEQCDKEKNEAVVKYAMRE------GEMMKLRDEISKKDSNMKVIKEELEAARkaQSQENLDDL 203
Cdd:PRK03918 300 EFYEEYLDELREIEKRLSRLEEEINGIEERIKELEekeerlEELKKKLKELEKRLEELEERHELYEEAK--AKKEELERL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 204 EKTVQNLkvEIEKLKHERFDFENRMKIAEKRVESLSSNLSESKQQGDMLRKQLIQAK----------------DDKHIIQ 267
Cdd:PRK03918 378 KKRLTGL--TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKkakgkcpvcgrelteeHRKELLE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 268 QYEVKLQTSTAELErRLRESEHDVERlRTSQLEMATKFEEASRENTDLLSKIDILQDQLS------LEEDRRKL--CEEQ 339
Cdd:PRK03918 456 EYTAELKRIEKELK-EIEEKERKLRK-ELRELEKVLKKESELIKLKELAEQLKELEEKLKkynleeLEKKAEEYekLKEK 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 340 IDRLKGVESFVESSSHRIEETEKERETAEEDREQAELEAAEYREQVEKMLKLTQELTERNMELQRKLKDEEGKNTSHNST 419
Cdd:PRK03918 534 LIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKE 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 420 IEKLQVELttslelcKSFEETNLKISEELENLKTEMQK-PVTLESLEENFYRDKYDEASRKLEQTEAKLAEEKNNFSAFK 498
Cdd:PRK03918 614 LEREEKEL-------KKLEEELDKAFEELAETEKRLEElRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELE 686
|
490
....*....|....*..
gi 17556076 499 KK---TSATLKELKSEL 512
Cdd:PRK03918 687 KRreeIKKTLEKLKEEL 703
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
55-384 |
9.78e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 9.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 55 QEFERLESQNAEYREKLLRTIRERdlneELLKNVQNQHKKELDAQVRRIRELEVQLKTTTDRGLAQEAHFNVTTKEMSQK 134
Cdd:TIGR02169 695 SELRRIENRLDELSQELSDASRKI----GEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEEL 770
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 135 fnlALQQATKKAEQCDKEKNEAVVKYAMREGEMMKLRDEISK---------KDSNMKVIKEELEAARKAQSQENLDDLEK 205
Cdd:TIGR02169 771 ---EEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRiearlreieQKLNRLTLEKEYLEKEIQELQEQRIDLKE 847
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 206 TVQNLKVEIEKLKHERFDFENRMKIAEKRVESLSSNLSESKQQGDMLRKQLiqakddkhiiqqyevklqtstAELERRLR 285
Cdd:TIGR02169 848 QIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL---------------------RELERKIE 906
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 286 ESEHDVERLRTSQLEMATKFEEASRENTDLLSKIDILQDQLSLEEDRRKL------CEEQIDRLKGV----ESFVESSSH 355
Cdd:TIGR02169 907 ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVqaelqrVEEEIRALEPVnmlaIQEYEEVLK 986
|
330 340
....*....|....*....|....*....
gi 17556076 356 RIEETEKERETAEEDREQAELEAAEYREQ 384
Cdd:TIGR02169 987 RLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
194-417 |
1.56e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 194 AQSQENLDDLEKTVQNLKVEIEKLKHERFDFENRMKIAEKRVESLSSNLSESKQQGDMLRKQLIQAKDD----KHIIQQY 269
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAElaelEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 270 EVKLQTSTAELERRLRESEHDVERLRTSQLEMATKFEEASRE-------NTDLLSKIDILQDQLSLEEDRRKLCEEQIDR 342
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRlqylkylAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17556076 343 LKGVESFVESSSHRIEETEKERETAEEDREQaelEAAEYREQVEKMLKLTQELTERNMELQRKLKDEEGKNTSHN 417
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEK---ELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
182-515 |
1.61e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.97 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 182 KVIKEELEAARKAQSQENLDDLEKTVQNLKVEIEKLKHERFDFENRMKIAEKR-------VESLSSNLSESKQQGDMLRK 254
Cdd:PRK03918 149 KVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKEleevlreINEISSELPELREELEKLEK 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 255 QLIQAKDDKHIIQQYEV----------KLQTSTAELERRLRESEHDVERLR------TSQLEMATKFEEASRENTDLLSK 318
Cdd:PRK03918 229 EVKELEELKEEIEELEKeleslegskrKLEEKIRELEERIEELKKEIEELEekvkelKELKEKAEEYIKLSEFYEEYLDE 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 319 IDILQDQLSLEEDRRKLCEEQIDRLKGVESFVESSSHRIEETEKERETAEEDREQAE-----------LEAAEYREQVEK 387
Cdd:PRK03918 309 LREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEeakakkeelerLKKRLTGLTPEK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 388 MLKLTQELTERNMELQRKLKDEEGKNTSHNSTIEKLQVELTtslELCKSFEETNLKISEELENLKTEMQKPVTLESLEEN 467
Cdd:PRK03918 389 LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIE---ELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIE 465
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 17556076 468 FYRDKYDEASRKLEQTEAKLAEEKNNFSAFKK--KTSATLKELKSELSGY 515
Cdd:PRK03918 466 KELKEIEEKERKLRKELRELEKVLKKESELIKlkELAEQLKELEEKLKKY 515
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
53-511 |
1.75e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.97 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 53 QEQEFERLESQNAEYREKLLRTIRERDLNEELLKNVQnQHKKELDAQVRRIRELEVQLKTTTDRGLAQEAHFNVTTKEMS 132
Cdd:PRK03918 198 KEKELEEVLREINEISSELPELREELEKLEKEVKELE-ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 133 QkfnlaLQQATKKAEQCDKEKNEAVvkyamregEMMKLRDEISKKDSNMKVIKEELEAARKAQSQ--ENLDDLEKTVQNL 210
Cdd:PRK03918 277 E-----LEEKVKELKELKEKAEEYI--------KLSEFYEEYLDELREIEKRLSRLEEEINGIEEriKELEEKEERLEEL 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 211 KVEIEKLKHERFDFENRMKIAEKRVESLSSNLSESKQQGDM----LRKQLIQAKDDKHIIQQYEVKLQTSTAELERRLRE 286
Cdd:PRK03918 344 KKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLtpekLEKELEELEKAKEEIEEEISKITARIGELKKEIKE 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 287 SEHDVERLRTSQLEMATKFEEASRENTDLLskIDILQDQLSLEEDRRKLCEEQIDRLKGVESFVESSSHRIEETEKERET 366
Cdd:PRK03918 424 LKKAIEELKKAKGKCPVCGRELTEEHRKEL--LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKEL 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 367 AEE-----------DREQAELEAAEYREQVEKMLKLTQELTERNMELQRkLKDEEGKNTSHNSTIEKLQVELTtslELCK 435
Cdd:PRK03918 502 AEQlkeleeklkkyNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEK-LEELKKKLAELEKKLDELEEELA---ELLK 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 436 SFEETNLKISEELENLKTEMQKP----VTLESLEENFYR--DKYDEASRKLEQTEAKLAEEKNNFSAFKKKTSATLKELK 509
Cdd:PRK03918 578 ELEELGFESVEELEERLKELEPFyneyLELKDAEKELEReeKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS 657
|
..
gi 17556076 510 SE 511
Cdd:PRK03918 658 EE 659
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
282-502 |
1.82e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 282 RRLRESEHDVERLRTS--QLEMATKFEEASRENTDLLSKIDILQDQLSLEEDRRK--LCEEQIDRLKgvesfvesssHRI 357
Cdd:COG4913 235 DDLERAHEALEDAREQieLLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRleLLEAELEELR----------AEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 358 EETEKERETAEEDREQAELEAAEYREQVEKM-LKLTQELTERNMELQRKLKDEEGKNTSHNSTIEKLQVELTTSLElckS 436
Cdd:COG4913 305 ARLEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAE---E 381
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17556076 437 FEETNLKISEELENLKTEMQKpvtlesleenfYRDKYDEASRKLEQTEAKLAEEKNNFSAFKKKTS 502
Cdd:COG4913 382 FAALRAEAAALLEALEEELEA-----------LEEALAEAEAALRDLRRELRELEAEIASLERRKS 436
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
185-410 |
2.26e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.56 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 185 KEELEAARkAQSQENLDDLEKTVQNLK------VEIEKLKHERFDFENRMKIAEKRVESLSSNLSESKQQGDMLRKQLIQ 258
Cdd:PRK02224 477 VEELEAEL-EDLEEEVEEVEERLERAEdlveaeDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEE 555
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 259 AKDDKHIIQQYEVKLQTSTAELERRLRESEHDVERLRTsqleMATKFEEASRENTDLLSKIDILQDQLSLEEDRRKLCEE 338
Cdd:PRK02224 556 KREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER----IRTLLAAIADAEDEIERLREKREALAELNDERRERLAE 631
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 339 QIDRLKGVESFVESSshRIEETEKERETAEEDREQAELEAAEYREQ----------VEKMLKLTQELTERNMELQRKLKD 408
Cdd:PRK02224 632 KRERKRELEAEFDEA--RIEEAREDKERAEEYLEQVEEKLDELREErddlqaeigaVENELEELEELRERREALENRVEA 709
|
..
gi 17556076 409 EE 410
Cdd:PRK02224 710 LE 711
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
54-498 |
2.80e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 2.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 54 EQEFERLESQNAEYREKLLRTIRERDLNEELLKNVQNQhKKELDAQVRRIRELEVQLKTTTDRGLAQEAhfNVTTKEMSQ 133
Cdd:PRK03918 292 AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEER-IKELEEKEERLEELKKKLKELEKRLEELEE--RHELYEEAK 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 134 KFNLALQQATKKAEQCDKEKNEAVVKYAMR-----EGEMMKLRDEISKKDSNMKVIKEELEAARKAQSQENLDDLEKTVQ 208
Cdd:PRK03918 369 AKKEELERLKKRLTGLTPEKLEKELEELEKakeeiEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEE 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 209 NLKVEIEKLKHERFDFENRMKIAEKRVESLSSNLSESKQQGDMLRKQLIQAKDDKHIIQQYEVKLQTSTAELERRLRESE 288
Cdd:PRK03918 449 HRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYE 528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 289 HDVERLRTSQLEMATKFEEASREN------TDLLSKIDILQDQLS-----LEEDRRKLCEEQIDRLKGVESFVESSShRI 357
Cdd:PRK03918 529 KLKEKLIKLKGEIKSLKKELEKLEelkkklAELEKKLDELEEELAellkeLEELGFESVEELEERLKELEPFYNEYL-EL 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 358 EETEKERETAEEDREQAELEAAEYREQVEKMLKLTQELTERNMELQRKLKDEEGKNTSHNSTieKLQVELTTSLELCKSF 437
Cdd:PRK03918 608 KDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYL--ELSRELAGLRAELEEL 685
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17556076 438 EETNLKISEELENLKTEMQKpvtlesleenfyRDKYDEASRKLEQTEAKLAEEKNNFSAFK 498
Cdd:PRK03918 686 EKRREEIKKTLEKLKEELEE------------REKAKKELEKLEKALERVEELREKVKKYK 734
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
55-452 |
3.55e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.77 E-value: 3.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 55 QEFERLESQNAEYREKLLRTIRERDLNEELLKNVQnqhkKELDAQVRRIRELEVQLKTTTDRGLAQEahfNVTTKEMSQK 134
Cdd:TIGR04523 239 QEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQ----KELEQNNKKIKELEKQLNQLKSEISDLN---NQKEQDWNKE 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 135 FNLALQQATKKAEQCDKEKNEAVVKYAMREGEMMKLRDEISKKDSNMKVIKEELEaarkaQSQENLDDLEKTVQNLKVEI 214
Cdd:TIGR04523 312 LKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELE-----EKQNEIEKLKKENQSYKQEI 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 215 EKLKHERFDFENRMKIAEK-------RVESLSSNLSESKQQGDMLRKQLIQAKDDKHIIQQYEVKLQTSTAELERRLRES 287
Cdd:TIGR04523 387 KNLESQINDLESKIQNQEKlnqqkdeQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESL 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 288 EHDVERLRTSQLEMATKFEEASRENTDLLSKIDILQDQLSLEEDRRKLCEEQIDRLKGVESFVESSSHRIE------ETE 361
Cdd:TIGR04523 467 ETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKEskisdlEDE 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 362 KERETAEEDREQAELEAAEYREQVEKMLKLTQELTERNMELQRKLKDEEGKNTSHNSTIEKLQVELTTSLELCKSFEETN 441
Cdd:TIGR04523 547 LNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKEN 626
|
410
....*....|.
gi 17556076 442 LKISEELENLK 452
Cdd:TIGR04523 627 EKLSSIIKNIK 637
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
185-513 |
3.96e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 40.73 E-value: 3.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 185 KEELEAARKAQSQENLDDLEKTVQNLKVEIEKLKHERFDFENRMKIAEKRVESL--SSNLSESKQQGDMLRKQLIQAKDD 262
Cdd:pfam02463 173 EALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLlyLDYLKLNEERIDLLQELLRDEQEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 263 KHIIQQYEVKLQTSTAELERRLRESEHDVERLRTSQLEMATKFEEASRENTDLLSKIDILQDQLSLEEDRRKLCEEQIDR 342
Cdd:pfam02463 253 IESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKK 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 343 LKGVesfvessshrIEETEKERETAEEDREQAELEAAEYREQVEKMLKLTQELTERNMELQRKLKDEEGKNTSHNSTIEK 422
Cdd:pfam02463 333 EKEE----------IEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 423 LQVELTTSLELCKSFEETNLKISEELENLKTEMQKPVTLESLEENFYRDKYDEASRKLEQTEAKLAEEKNNFSAFKKKTS 502
Cdd:pfam02463 403 EEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKL 482
|
330
....*....|.
gi 17556076 503 ATLKELKSELS 513
Cdd:pfam02463 483 QEQLELLLSRQ 493
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
54-407 |
4.74e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.33 E-value: 4.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 54 EQEFERLESQNAEYREKLLRTIRERDLNEELLKNVQnqhkKELDAQVRRIRELEVQLKTTTDR-GLAQEAhfnVTTKEMS 132
Cdd:PRK04863 278 ANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMA----RELAELNEAESDLEQDYQAASDHlNLVQTA---LRQQEKI 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 133 QKFNLALQQATKKAEQCDKEKNEAVVKYAMREGEMMKLRDEISKKDSNMKVIKEELEAA--------------RKAQSQE 198
Cdd:PRK04863 351 ERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQqtraiqyqqavqalERAKQLC 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 199 NLDDL-----EKTVQNLKVEIEKLKHERFDFENRMKIAEKRVESLSSNLSESKQQGDML---------RKQLIQAKDDKH 264
Cdd:PRK04863 431 GLPDLtadnaEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVsrseawdvaRELLRRLREQRH 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 265 IIQQyEVKLQTSTAELERRLREsEHDVERLRTsQLEMAtkfeeasrentdllskidiLQDQLSLEEDRRKLCEEQIDRLK 344
Cdd:PRK04863 511 LAEQ-LQQLRMRLSELEQRLRQ-QQRAERLLA-EFCKR-------------------LGKNLDDEDELEQLQEELEARLE 568
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17556076 345 GVESFVESSSHRIEETEKERETAEEDREQAELEAAEY----------REQVEKMLKLTQELTERNMELQRKLK 407
Cdd:PRK04863 569 SLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWlaaqdalarlREQSGEEFEDSQDVTEYMQQLLERER 641
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
185-311 |
5.24e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.23 E-value: 5.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 185 KEELEAARKAQSQENLDDLEKTVQNLKVEIEKLKHERFDFENRMKIAEKRVESLSSNLSESKqqgdmlRKQLIQAKDDKH 264
Cdd:COG2433 393 EEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEAR------SEERREIRKDRE 466
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 17556076 265 IiqqyeVKLQTSTAELERRLRESEHDVERLRTSQLEM-ATKFEEASRE 311
Cdd:COG2433 467 I-----SRLDREIERLERELEEERERIEELKRKLERLkELWKLEHSGE 509
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
357-457 |
6.49e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.76 E-value: 6.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 357 IEETEKEretAEEDREQAELEAAE----YREQVEKmlkltqELTERNMELQR---KLKDEEGKNTSHNSTIEKLQVELTT 429
Cdd:PRK12704 44 LEEAKKE---AEAIKKEALLEAKEeihkLRNEFEK------ELRERRNELQKlekRLLQKEENLDRKLELLEKREEELEK 114
|
90 100
....*....|....*....|....*...
gi 17556076 430 SLELCKSFEETNLKISEELENLKTEMQK 457
Cdd:PRK12704 115 KEKELEQKQQELEKKEEELEELIEEQLQ 142
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
259-495 |
6.64e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.90 E-value: 6.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 259 AKDDKHIIQQYEV----------KLQTSTAELERRLRESEHDVERLRTSQLEMATKFEEASRENTDLLSKIDI--LQDQL 326
Cdd:COG4913 591 EKDDRRRIRSRYVlgfdnraklaALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVasAEREI 670
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 327 S-LEEDRRKLcEEQIDRLKGVESFVESSSHRIEETEKERETAEEDREQAELEAAEYREQVEKMLKLTQELTERNMELQRK 405
Cdd:COG4913 671 AeLEAELERL-DASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA 749
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 406 LKDEEGKNTSHNSTIEKLQVELTTSLELCksfEETNLKISEELENLKTEMQK---------PVTLESLEEnfYRDKYDE- 475
Cdd:COG4913 750 LLEERFAAALGDAVERELRENLEERIDAL---RARLNRAEEELERAMRAFNRewpaetadlDADLESLPE--YLALLDRl 824
|
250 260
....*....|....*....|
gi 17556076 476 ASRKLEQTEAKLAEEKNNFS 495
Cdd:COG4913 825 EEDGLPEYEERFKELLNENS 844
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
42-298 |
7.68e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.90 E-value: 7.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 42 ENSLYSKCNAVQEQeFERLEsqnaEYREKLLRTIRERDLNEELlknvqNQHKKELDAQVRRIRELEvQLKTTTDRGLAQE 121
Cdd:COG4913 220 EPDTFEAADALVEH-FDDLE----RAHEALEDAREQIELLEPI-----RELAERYAAARERLAELE-YLRAALRLWFAQR 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 122 AhfnvttkemsqkfnlaLQQATKKAEQCDKEKNEAVVKYAMREGEMMKLRDEIskkdsnmkvikEELEAARKAQSQENLD 201
Cdd:COG4913 289 R----------------LELLEAELEELRAELARLEAELERLEARLDALREEL-----------DELEAQIRGNGGDRLE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 202 DLEKTVQNLKVEIEKLKHERFDFENRMKIAEKRVESLSSNLSESKQQgdmLRKQLIQAKDDKHIIQQYEVKLQTSTAELE 281
Cdd:COG4913 342 QLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAE---AAALLEALEEELEALEEALAEAEAALRDLR 418
|
250
....*....|....*..
gi 17556076 282 RRLRESEHDVERLRTSQ 298
Cdd:COG4913 419 RELRELEAEIASLERRK 435
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
279-493 |
9.05e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 39.45 E-value: 9.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 279 ELERRLRESEHDVERLRtsqlematkFEEASRENTDLLSKIDILQDQLSLEEDRRKLCEEQIDRLKGVESFVESSSHRI- 357
Cdd:pfam06160 241 QLEEQLEENLALLENLE---------LDEAEEALEEIEERIDQLYDLLEKEVDAKKYVEKNLPEIEDYLEHAEEQNKELk 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17556076 358 EETE--KERETAEEDREQAELEAAEYREQVEKMLKLTQELTERNMELQRKLKDEEGKNTSHNSTIEKLQVELTTSLE-LC 434
Cdd:pfam06160 312 EELErvQQSYTLNENELERVRGLEKQLEELEKRYDEIVERLEEKEVAYSELQEELEEILEQLEEIEEEQEEFKESLQsLR 391
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17556076 435 KSFEETNLKISE---ELENLKTEMQKpVTLESLEEnFYRDKYDEASRKLEQTEAKLAEEKNN 493
Cdd:pfam06160 392 KDELEAREKLDEfklELREIKRLVEK-SNLPGLPE-SYLDYFFDVSDEIEDLADELNEVPLN 451
|
|
| |
