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Conserved domains on  [gi|808355626|ref|NP_498870|]
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Large ribosomal subunit protein bL32m [Caenorhabditis elegans]

Protein Classification

bL32 family ribosomal protein( domain architecture ID 917)

bL32 family ribosomal protein such as Drosophila melanogaster mitochondrial 39S ribosomal protein L32, a component of the mitochondrial large ribosomal subunit, and bacterial 50S ribosomal protein L32

Gene Ontology:  GO:0003735
PubMed:  24524803

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Ribosomal_L32p super family cl09115
Ribosomal L32p protein family;
69-115 8.23e-04

Ribosomal L32p protein family;


The actual alignment was detected with superfamily member TIGR01031:

Pssm-ID: 471853  Cd Length: 55  Bit Score: 36.16  E-value: 8.23e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 808355626   69 VPKYRTSKPKKVTRKFSFTRLLQPidNLVTCPACSNIHPSDTICDAC 115
Cdd:TIGR01031   1 VPKRKTSKSRKRKRRSHDAKLTAP--TLVVCPNCGEFKLPHRVCPSC 45
 
Name Accession Description Interval E-value
rpmF_bact TIGR01031
ribosomal protein L32; This protein describes bacterial ribosomal protein L32. The noise ...
69-115 8.23e-04

ribosomal protein L32; This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273404  Cd Length: 55  Bit Score: 36.16  E-value: 8.23e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 808355626   69 VPKYRTSKPKKVTRKFSFTRLLQPidNLVTCPACSNIHPSDTICDAC 115
Cdd:TIGR01031   1 VPKRKTSKSRKRKRRSHDAKLTAP--TLVVCPNCGEFKLPHRVCPSC 45
 
Name Accession Description Interval E-value
rpmF_bact TIGR01031
ribosomal protein L32; This protein describes bacterial ribosomal protein L32. The noise ...
69-115 8.23e-04

ribosomal protein L32; This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273404  Cd Length: 55  Bit Score: 36.16  E-value: 8.23e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 808355626   69 VPKYRTSKPKKVTRKFSFTRLLQPidNLVTCPACSNIHPSDTICDAC 115
Cdd:TIGR01031   1 VPKRKTSKSRKRKRRSHDAKLTAP--TLVVCPNCGEFKLPHRVCPSC 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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