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Conserved domains on  [gi|17552132|ref|NP_498442|]
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HAT C-terminal dimerization domain-containing protein [Caenorhabditis elegans]

Protein Classification

hAT family dimerization domain-containing protein( domain architecture ID 10529594)

hAT family dimerization domain-containing protein is involved in dimerization of transposases of elements belonging to the Activator (hAT) superfamily

Gene Ontology:  GO:0032196
PubMed:  15869889

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Dimer_Tnp_hAT pfam05699
hAT family C-terminal dimerization region; This dimerization region is found at the C terminus ...
 555-636 5.96e-16

hAT family C-terminal dimerization region; This dimerization region is found at the C terminus of the transposases of elements belonging to the Activator superfamily (hAT element superfamily). The isolated dimerization region forms extremely stable dimers in vitro.


:

Pssm-ID: 399013  Cd Length: 83  Bit Score: 73.06  E-value: 5.96e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17552132   555 ELNDYQSMPLCWRDFELSPLEFWSKYSSRFPRLTKIASNVFCCLSSSTTCESSISEL-KLFDTHGPEIDYENVEQHMFSF 633
Cdd:pfam05699   1 ELDQYLSEPVLPRNEDFDPLEWWKENSSRYPNLSKLARDILSIPVSSAASERSFSTLgKVILESRNRLEPLNVEALLCIE 80


                  ...
gi 17552132   634 LNS 636
Cdd:pfam05699  81 DWL 83
 
Name Accession Description Interval E-value
Dimer_Tnp_hAT pfam05699
hAT family C-terminal dimerization region; This dimerization region is found at the C terminus ...
 555-636 5.96e-16

hAT family C-terminal dimerization region; This dimerization region is found at the C terminus of the transposases of elements belonging to the Activator superfamily (hAT element superfamily). The isolated dimerization region forms extremely stable dimers in vitro.


Pssm-ID: 399013  Cd Length: 83  Bit Score: 73.06  E-value: 5.96e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17552132   555 ELNDYQSMPLCWRDFELSPLEFWSKYSSRFPRLTKIASNVFCCLSSSTTCESSISEL-KLFDTHGPEIDYENVEQHMFSF 633
Cdd:pfam05699   1 ELDQYLSEPVLPRNEDFDPLEWWKENSSRYPNLSKLARDILSIPVSSAASERSFSTLgKVILESRNRLEPLNVEALLCIE 80


                  ...
gi 17552132   634 LNS 636
Cdd:pfam05699  81 DWL 83
 
Name Accession Description Interval E-value
Dimer_Tnp_hAT pfam05699
hAT family C-terminal dimerization region; This dimerization region is found at the C terminus ...
 555-636 5.96e-16

hAT family C-terminal dimerization region; This dimerization region is found at the C terminus of the transposases of elements belonging to the Activator superfamily (hAT element superfamily). The isolated dimerization region forms extremely stable dimers in vitro.


Pssm-ID: 399013  Cd Length: 83  Bit Score: 73.06  E-value: 5.96e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17552132   555 ELNDYQSMPLCWRDFELSPLEFWSKYSSRFPRLTKIASNVFCCLSSSTTCESSISEL-KLFDTHGPEIDYENVEQHMFSF 633
Cdd:pfam05699   1 ELDQYLSEPVLPRNEDFDPLEWWKENSSRYPNLSKLARDILSIPVSSAASERSFSTLgKVILESRNRLEPLNVEALLCIE 80


                  ...
gi 17552132   634 LNS 636
Cdd:pfam05699  81 DWL 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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