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Conserved domains on  [gi|392894540|ref|NP_497778|]
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Microtubule-associated protein futsch [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 217-551 8.59e-13

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 72.66  E-value: 8.59e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  217 PTVKSKDALLDIPAPAV---PRPVAGKPSTRSASTTGAAR-TRPAIPAVSAPRA-----LTSRAPTGPACPTTT----RS 283
Cdd:PHA03247 2690 PTVGSLTSLADPPPPPPtpePAPHALVSATPLPPGPAAARqASPALPAAPAPPAvpagpATPGGPARPARPPTTagppAP 2769

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  284 AAPATRTAVPPRATAPPKAASASKAPIRAPIPaksapapprgapakaakaeaIAQKKVAGKVQRAAPSKPASAvsAPKAT 363
Cdd:PHA03247 2770 APPAAPAAGPPRRLTRPAVASLSESRESLPSP--------------------WDPADPPAAVLAPAAALPPAA--SPAGP 2827

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  364 APASTSSAPATAPEASRRDPSdvtivlddslfPEDFNQGSAPMDIVVIPPTPEPPRLEEARATHPKEPIVDAEDLAKAPQ 443
Cdd:PHA03247 2828 LPPPTSAQPTAPPPPPGPPPP-----------SLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTE 2896

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  444 evddvaNLADVEDEIPPPVGAFKKPEPRPETIVAGGSGEDRIPEPVdafKKPDPVELDDFDPLKPSHPDPSAPVVPSGHL 523
Cdd:PHA03247 2897 ------SFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPP---PRPQPPLAPTTDPAGAGEPSGAVPQPWLGAL 2967

                         330       340       350
                  ....*....|....*....|....*....|.
gi 392894540  524 I---VATPDPELPNIVAAVPFIPPSPKGPND 551
Cdd:PHA03247 2968 VpgrVAVPRFRVPQPAPSREAPASSTPPLTG 2998
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
 217-551 8.59e-13

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 72.66  E-value: 8.59e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  217 PTVKSKDALLDIPAPAV---PRPVAGKPSTRSASTTGAAR-TRPAIPAVSAPRA-----LTSRAPTGPACPTTT----RS 283
Cdd:PHA03247 2690 PTVGSLTSLADPPPPPPtpePAPHALVSATPLPPGPAAARqASPALPAAPAPPAvpagpATPGGPARPARPPTTagppAP 2769

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  284 AAPATRTAVPPRATAPPKAASASKAPIRAPIPaksapapprgapakaakaeaIAQKKVAGKVQRAAPSKPASAvsAPKAT 363
Cdd:PHA03247 2770 APPAAPAAGPPRRLTRPAVASLSESRESLPSP--------------------WDPADPPAAVLAPAAALPPAA--SPAGP 2827

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  364 APASTSSAPATAPEASRRDPSdvtivlddslfPEDFNQGSAPMDIVVIPPTPEPPRLEEARATHPKEPIVDAEDLAKAPQ 443
Cdd:PHA03247 2828 LPPPTSAQPTAPPPPPGPPPP-----------SLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTE 2896

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  444 evddvaNLADVEDEIPPPVGAFKKPEPRPETIVAGGSGEDRIPEPVdafKKPDPVELDDFDPLKPSHPDPSAPVVPSGHL 523
Cdd:PHA03247 2897 ------SFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPP---PRPQPPLAPTTDPAGAGEPSGAVPQPWLGAL 2967

                         330       340       350
                  ....*....|....*....|....*....|.
gi 392894540  524 I---VATPDPELPNIVAAVPFIPPSPKGPND 551
Cdd:PHA03247 2968 VpgrVAVPRFRVPQPAPSREAPASSTPPLTG 2998
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 215-536 1.23e-06

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 51.88  E-value: 1.23e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  215 NAPTVKSKDALLDIPAPAVPRPVAGKPSTRSASTTGAARTRPAIPAVSAPRALTSRAPT--GPACPTTTRSaAPATRTAV 292
Cdd:pfam17823  96 DLSEPATREGAADGAASRALAAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANAsaAPRAAIAAAS-APHAASPA 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  293 PPRATAPPKAASASKAPIRAPIPAKSAPAPPRGAPAKAAKAEAIAQKKVAGKVQRAAPSK---PASAVSAPKATAPAS-- 367
Cdd:pfam17823 175 PRTAASSTTAASSTTAASSAPTTAASSAPATLTPARGISTAATATGHPAAGTALAAVGNSspaAGTVTAAVGTVTPAAla 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  368 -----------------TSSAPATAPEASRRDPSDvtiVLDDSLFPEDFNQGSAPM-----DIVVIPPTPEPPRLEEARA 425
Cdd:pfam17823 255 tlaaaagtvasaagtinMGDPHARRLSPAKHMPSD---TMARNPAAPMGAQAQGPIiqvstDQPVHNTAGEPTPSPSNTT 331

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  426 THPKEPI--------------VDAEDLAKAPQEVDDVANLADVEDEIPPpvgafKKPEPRPETIVAGGSGEDRIPEPVDA 491
Cdd:pfam17823 332 LEPNTPKsvastnlavvtttkAQAKEPSASPVPVLHTSMIPEVEATSPT-----TQPSPLLPTQGAAGPGILLAPEQVAT 406

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 392894540  492 FKKPDPvelDDFDPLKPSHPDPSAPVVPS------GHLIVATPDPELPNIV 536
Cdd:pfam17823 407 EATAGT---ASAGPTPRSSGDPKTLAMAScqlstqGQYLVVTTDPLTPALV 454
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
 217-551 8.59e-13

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 72.66  E-value: 8.59e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  217 PTVKSKDALLDIPAPAV---PRPVAGKPSTRSASTTGAAR-TRPAIPAVSAPRA-----LTSRAPTGPACPTTT----RS 283
Cdd:PHA03247 2690 PTVGSLTSLADPPPPPPtpePAPHALVSATPLPPGPAAARqASPALPAAPAPPAvpagpATPGGPARPARPPTTagppAP 2769

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  284 AAPATRTAVPPRATAPPKAASASKAPIRAPIPaksapapprgapakaakaeaIAQKKVAGKVQRAAPSKPASAvsAPKAT 363
Cdd:PHA03247 2770 APPAAPAAGPPRRLTRPAVASLSESRESLPSP--------------------WDPADPPAAVLAPAAALPPAA--SPAGP 2827

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  364 APASTSSAPATAPEASRRDPSdvtivlddslfPEDFNQGSAPMDIVVIPPTPEPPRLEEARATHPKEPIVDAEDLAKAPQ 443
Cdd:PHA03247 2828 LPPPTSAQPTAPPPPPGPPPP-----------SLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTE 2896

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  444 evddvaNLADVEDEIPPPVGAFKKPEPRPETIVAGGSGEDRIPEPVdafKKPDPVELDDFDPLKPSHPDPSAPVVPSGHL 523
Cdd:PHA03247 2897 ------SFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPP---PRPQPPLAPTTDPAGAGEPSGAVPQPWLGAL 2967

                         330       340       350
                  ....*....|....*....|....*....|.
gi 392894540  524 I---VATPDPELPNIVAAVPFIPPSPKGPND 551
Cdd:PHA03247 2968 VpgrVAVPRFRVPQPAPSREAPASSTPPLTG 2998
PHA03247 PHA03247
large tegument protein UL36; Provisional
 216-552 1.23e-10

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 65.73  E-value: 1.23e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  216 APTVKSKDALLDIPAPAVPRPVA---GKPSTRSASTTGAARTRPAIPAVSAPRALTS-----------RAPTGPACPTTT 281
Cdd:PHA03247 2613 PPSPLPPDTHAPDPPPPSPSPAAnepDPHPPPTVPPPERPRDDPAPGRVSRPRRARRlgraaqassppQRPRRRAARPTV 2692

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  282 RSAAPATRTAVPPRATAPPKAASASKAPIrAPIPAKSAPAPPRGAPAKAAKAEAIAQKKVAGKVQRAAPSKPASAVSA-- 359
Cdd:PHA03247 2693 GSLTSLADPPPPPPTPEPAPHALVSATPL-PPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPap 2771

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  360 ---------PKATAPASTSSAPATAPEASRRDPSDVTIVLDDSLFPEDFNQGSApmdivviPPTPEPPRLEEARATHPKE 430
Cdd:PHA03247 2772 paapaagppRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA-------GPLPPPTSAQPTAPPPPPG 2844

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  431 PIVDAEDLAKApqevddVANLADVEDEiPPPVGAFKKPEPRPETIVAggsgedRIPEPVDAfKKPDPVELDDFDPLKPSH 510
Cdd:PHA03247 2845 PPPPSLPLGGS------VAPGGDVRRR-PPSRSPAAKPAAPARPPVR------RLARPAVS-RSTESFALPPDQPERPPQ 2910

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 392894540  511 PDPSAPVVPSGHLivatPDPELPNIVAAVPFIPPSPKGPNDG 552
Cdd:PHA03247 2911 PQAPPPPQPQPQP----PPPPQPQPPPPPPPRPQPPLAPTTD 2948
PHA03247 PHA03247
large tegument protein UL36; Provisional
 229-577 1.74e-10

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 65.34  E-value: 1.74e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  229 PAPAVPrPVAGKPSTRSASTTGAARTRPAIPAVSApRALTSRAPTGPACPTTTRSAAPATRTAVPPRATAPPKAASASKA 308
Cdd:PHA03247 2551 PPPPLP-PAAPPAAPDRSVPPPRPAPRPSEPAVTS-RARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPP 2628

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  309 PIRAPIPAKSAPAPPRGAPAKAAKAEAIAQKKVAGKVQRAAPSKPASAVSAPKAtaPASTSSAPATAPEASRRDPSDvti 388
Cdd:PHA03247 2629 PSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQR--PRRRAARPTVGSLTSLADPPP--- 2703

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  389 vlddslfPEdfnQGSAPMDIVVIPPTPEPPRLEEARATHPKEPIvdaedlAKAPQEVDDVANLADVEDEIPPPVGAFKKP 468
Cdd:PHA03247 2704 -------PP---PTPEPAPHALVSATPLPPGPAAARQASPALPA------APAPPAVPAGPATPGGPARPARPPTTAGPP 2767

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  469 EPRPETIVAGGsgedripePVDAFKKPDPVELDDFDPLKPSHPDPSAPVVP-----SGHLIVATPDPELPNIVAAVPFIP 543
Cdd:PHA03247 2768 APAPPAAPAAG--------PPRRLTRPAVASLSESRESLPSPWDPADPPAAvlapaAALPPAASPAGPLPPPTSAQPTAP 2839

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 392894540  544 PSPKGPND------GLVKLDDELEKIAPGFEEPLIPQAPR 577
Cdd:PHA03247 2840 PPPPGPPPpslplgGSVAPGGDVRRRPPSRSPAAKPAAPA 2879
PHA03247 PHA03247
large tegument protein UL36; Provisional
 207-552 8.44e-10

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 63.03  E-value: 8.44e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  207 AAKSLPFLNAPTVKSKDALLDIPAPAVPRPVAG--------KPSTRSASTTGAARTRPAIPAVSAPRALTsRAPTGPACP 278
Cdd:PHA03247 2715 LVSATPLPPGPAAARQASPALPAAPAPPAVPAGpatpggpaRPARPPTTAGPPAPAPPAAPAAGPPRRLT-RPAVASLSE 2793

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  279 TTTRSAAPATRTAVPPRATAPPKAASASKAPIRAPIPAKSAPAPPRGAPAKAAKAEAIAQKKVA--GKVQRAAPSKPASA 356
Cdd:PHA03247 2794 SRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVApgGDVRRRPPSRSPAA 2873

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  357 VSAPKATAPASTSSAPATAPEA-SRRDPSDVTivldDSLFPEDFNQGSAPMDIVVIPPTPEPPRLEEARATHPKEPIVDA 435
Cdd:PHA03247 2874 KPAAPARPPVRRLARPAVSRSTeSFALPPDQP----ERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDP 2949

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  436 EDLAKAPQEVDDVANLADVEDEIPPPvgAFKKPEPRPETIVAGGSG---------------------EDRIPEPVDAFKK 494
Cdd:PHA03247 2950 AGAGEPSGAVPQPWLGALVPGRVAVP--RFRVPQPAPSREAPASSTppltghslsrvsswasslalhEETDPPPVSLKQT 3027

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 392894540  495 ---PDPVELDDFDPLKPSHPDPSapvvPSGHLIVATPDPELPnivaavPFIPPSPKGPNDG 552
Cdd:PHA03247 3028 lwpPDDTEDSDADSLFDSDSERS----DLEALDPLPPEPHDP------FAHEPDPATPEAG 3078
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
229-380 8.12e-09

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 59.48  E-value: 8.12e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 229 PAPAVPRPVAGKPSTRSASTTGAARTRPAIPAVSAPRALTSRAPTGPACPTTTRSAAPA--TRTAVPPRATAPPKAASAS 306
Cdd:PRK07003 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAaaTRAEAPPAAPAPPATADRG 439

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 392894540 307 KAPIRAPIPAKSAPAPPRGAPAKAAKAEAIAQKKVAGKVQrAAPSKPASAVSAPKATAPASTSSAPATAPEASR 380
Cdd:PRK07003 440 DDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASA-PASDAPPDAAFEPAPRAAAPSAATPAAVPDARA 512
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
208-386 1.51e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 58.35  E-value: 1.51e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 208 AKSLPFLNAPTVKSKDALLDIPAPAVPRPVAgkpSTRSASTTGAARTRPAIPAVSAPRALTSRAPTGPACPTTTRSAAP- 286
Cdd:PRK12323 383 AQPAPAAAAPAAAAPAPAAPPAAPAAAPAAA---AAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPa 459

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 287 -ATRTAVPPRATAPPKAASASKAPIRAPIPAKSAPAPPRGAPAKAAKAEAIAQKKVAGKVQRAAPSKPASAVSAPKATAP 365
Cdd:PRK12323 460 aAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFE 539

                        170       180
                 ....*....|....*....|.
gi 392894540 366 ASTSSAPATAPEASRRDPSDV 386
Cdd:PRK12323 540 TLAPAPAAAPAPRAAAATEPV 560
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
230-501 1.44e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 55.24  E-value: 1.44e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 230 APAVPRPVAGKPSTRSASTTGAARTRPAIPAVSAPRALTSRAPTGPACPTTTRSAAPATRTAVPPRATAPPKAASASKAP 309
Cdd:PRK07003 416 AAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPR 495

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 310 IRAPIPAKSAPAPPRGAPAKAAKAEAiaqkkvagkVQRAAPSKPASAVSAPKATAPASTSSAPATAPEASRR-------D 382
Cdd:PRK07003 496 AAAPSAATPAAVPDARAPAAASREDA---------PAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNagmrvssD 566

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 383 PSDVTIVLDDSLFPEDFNQGSAPMDIVVIPPTPEPPRLEEARATHPKEPIVDAEDLAKAPQEVDDV-----ANLADVEDE 457
Cdd:PRK07003 567 RGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPPWEDIppddyVPLSADEGF 646

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 392894540 458 IPPPVGAFKKPEPRPETIVAGGSGEDRIPEPVDAFKKPDPVELD 501
Cdd:PRK07003 647 GGPDDGFVPVFDSGPDDVRVAPKPADAPAPPVDTRPLPPAIPLD 690
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 232-378 3.33e-07

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 53.42  E-value: 3.33e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 232 AVPRPVAGKPSTRSASTTGAARTRPAIPAVSAPRALTSRAPTGPACPTTTRSAAPATRTAVPPRATAPPkaASASKAPIR 311
Cdd:PTZ00436 203 AAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPP--AKAAAPPAK 280

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 392894540 312 APIPAKSAPAPPRGAPAKAAKAEAIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAPATAPEA 378
Cdd:PTZ00436 281 AAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAA 347
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 235-373 5.10e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 53.56  E-value: 5.10e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 235 RPVAGKPSTRSASTTGAARTRPAIPAVsAPRALTSRAPTGPACPTTTRSAAPATRTAVPPRATAPPKAASASKAPIRAPI 314
Cdd:PRK14951 365 KPAAAAEAAAPAEKKTPARPEAAAPAA-APVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPA 443

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 392894540 315 PAksapapprgapAKAAKAEAIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAPA 373
Cdd:PRK14951 444 AV-----------ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPT 491
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
259-468 5.84e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 53.34  E-value: 5.84e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 259 PAVSAPRAltsrAPTGPACPTTTRSAAPATRTAVPPratAPPKAASASKAPIRAPIPAKSAPAPPRGAPAKAAKAeaiaq 338
Cdd:PRK12323 376 TAAAAPVA----QPAPAAAAPAAAAPAPAAPPAAPA---AAPAAAAAARAVAAAPARRSPAPEALAAARQASARG----- 443

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 339 kkvAGKVQRAAPSKPASAVSAPKATAPASTSSAPATAPEASRRDPSDVTIVLDDSLFPEDfnqgSAPMDIVVIPPTPEPP 418
Cdd:PRK12323 444 ---PGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWE----ELPPEFASPAPAQPDA 516

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 392894540 419 RLEEARATHPKEPIVDAEDLAKAPQEVDDVANLADVEDEIPPPVGAFKKP 468
Cdd:PRK12323 517 APAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPP 566
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
235-423 7.40e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 52.93  E-value: 7.40e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 235 RPVAGKPSTRSASTTGAARTRPAIPAVSAPRALTSRAPTGPACPTTTRSAAPATRTAVPPRATapPKAASASKAPIRAPI 314
Cdd:PRK07003 354 RMLAFEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAA--AAAATRAEAPPAAPA 431

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 315 PAKSAPAPPRGAPAKAAKAEAIAQkkvagkvqRAAPSKPASAVSAPKATAPASTSSAPATAPEASRRDPSDVTIVLDDSL 394
Cdd:PRK07003 432 PPATADRGDDAADGDAPVPAKANA--------RASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAAT 503

                        170       180       190
                 ....*....|....*....|....*....|..
gi 392894540 395 FP---EDFNQGSAPMDIVVIPPTPEPPRLEEA 423
Cdd:PRK07003 504 PAavpDARAPAAASREDAPAAAAPPAPEARPP 535
PHA03247 PHA03247
large tegument protein UL36; Provisional
 217-583 8.97e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.02  E-value: 8.97e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  217 PTVKSKDALLDIPA----PAVPRPVAGKPSTRSASTTGAARTRPAIPAVSAPRALTSRAPTGPACPTTTRSA---APATR 289
Cdd:PHA03247 2580 PAVTSRARRPDAPPqsarPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERprdDPAPG 2659

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  290 TAVPPRATAPPKAASASKAPIRAPIPaksapapPRGAPAKAAKAEAIAQKKvAGKVQRAAPSKPASAVSAPKATAPASTS 369
Cdd:PHA03247 2660 RVSRPRRARRLGRAAQASSPPQRPRR-------RAARPTVGSLTSLADPPP-PPPTPEPAPHALVSATPLPPGPAAARQA 2731

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  370 SAPATAPEASRrdPSDVTIVLDDSLFPEDFNQGSAPmdivviPPTPEPPRLEEA----RATHPK-EPIVDAEDLAKAPQE 444
Cdd:PHA03247 2732 SPALPAAPAPP--AVPAGPATPGGPARPARPPTTAG------PPAPAPPAAPAAgpprRLTRPAvASLSESRESLPSPWD 2803

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  445 VDDVANLADVEDEIPPPVGAFKKPEPRPETIVAGGSGEDRIPEPVDAFKKPDPVELDDFDPLKPSHPDPSAPVVPSGHLI 524
Cdd:PHA03247 2804 PADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPV 2883

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 392894540  525 --VATPDPELPNIVAAVPFIPPSPKGPNDGLVKLDDELEKIAPGFEEPLIPQAPRDDGTLA 583
Cdd:PHA03247 2884 rrLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA 2944
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 215-536 1.23e-06

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 51.88  E-value: 1.23e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  215 NAPTVKSKDALLDIPAPAVPRPVAGKPSTRSASTTGAARTRPAIPAVSAPRALTSRAPT--GPACPTTTRSaAPATRTAV 292
Cdd:pfam17823  96 DLSEPATREGAADGAASRALAAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANAsaAPRAAIAAAS-APHAASPA 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  293 PPRATAPPKAASASKAPIRAPIPAKSAPAPPRGAPAKAAKAEAIAQKKVAGKVQRAAPSK---PASAVSAPKATAPAS-- 367
Cdd:pfam17823 175 PRTAASSTTAASSTTAASSAPTTAASSAPATLTPARGISTAATATGHPAAGTALAAVGNSspaAGTVTAAVGTVTPAAla 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  368 -----------------TSSAPATAPEASRRDPSDvtiVLDDSLFPEDFNQGSAPM-----DIVVIPPTPEPPRLEEARA 425
Cdd:pfam17823 255 tlaaaagtvasaagtinMGDPHARRLSPAKHMPSD---TMARNPAAPMGAQAQGPIiqvstDQPVHNTAGEPTPSPSNTT 331

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  426 THPKEPI--------------VDAEDLAKAPQEVDDVANLADVEDEIPPpvgafKKPEPRPETIVAGGSGEDRIPEPVDA 491
Cdd:pfam17823 332 LEPNTPKsvastnlavvtttkAQAKEPSASPVPVLHTSMIPEVEATSPT-----TQPSPLLPTQGAAGPGILLAPEQVAT 406

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 392894540  492 FKKPDPvelDDFDPLKPSHPDPSAPVVPS------GHLIVATPDPELPNIV 536
Cdd:pfam17823 407 EATAGT---ASAGPTPRSSGDPKTLAMAScqlstqGQYLVVTTDPLTPALV 454
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 229-457 1.40e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 52.30  E-value: 1.40e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 229 PAPAVPRPVAGKPSTRSASTTGAARTRPAIPAVSAPRALTSRAPTGPACPTTTRSAAPATRTAVPPRATAPPKAASASKA 308
Cdd:PRK07764 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGW 669

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 309 PIRAPIPAKSAPAPPRGAPAKAAKAEAIAQKKVAGKVQRAAPSKPASAVSAPkaTAPASTSSAPATAPEASRRDPSDVti 388
Cdd:PRK07764 670 PAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQP--PQAAQGASAPSPAADDPVPLPPEP-- 745

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 392894540 389 vlDDSLFPEDFNQGSAPMDivviPPTPEPPRLEEARATHPKEPIVDAEDLAKAPQEVD----DVANLADVEDE 457
Cdd:PRK07764 746 --DDPPDPAGAPAQPPPPP----APAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDrrdaEEVAMELLEEE 812
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
229-385 2.86e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 51.03  E-value: 2.86e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 229 PAPAV------PRPVAGKPSTRSASTTGAARTRPAIPAVSAPRALTSRAPTGPACPTTTRSAAPATRTAVPPRATAPPKA 302
Cdd:PRK12323 374 PATAAaapvaqPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPA 453

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 303 ASASKAPIRAPIPAKSAPAPPRGAPAKAAKAEAIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAPATAPEASRRD 382
Cdd:PRK12323 454 PAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATAD 533


                 ...
gi 392894540 383 PSD 385
Cdd:PRK12323 534 PDD 536
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 252-378 3.27e-06

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 50.33  E-value: 3.27e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 252 ARTRPAIPAVSAPRALTSRAPTGPACPTTTRSAAPATRTAVPPRATAPPkaASASKAPIRAPIPAKSAPAPPRGAPAKAA 331
Cdd:PTZ00436 188 ARREDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPP--AKAAAAPAKAAAAPAKAAAPPAKAAAPPA 265

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 392894540 332 KAEAIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAPATAPEA 378
Cdd:PTZ00436 266 KAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAA 312
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
207-386 3.93e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 50.64  E-value: 3.93e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 207 AAKSLPFLNAPTVKSKDALLDIPAPAVPRPVAGKPSTRSASTTGAARTRPAIPAVSAPRALTSRAPTGPACPTTTRSAAP 286
Cdd:PRK12323 401 APPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAP 480

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 287 ATRTAVPPRATAPPKAASASKAPIRAPIPAKSAPAPPRGAPAKAAKAEAIAQKKVAgkvQRAAPSKPASAVSAPKATAPa 366
Cdd:PRK12323 481 ARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDD---AFETLAPAPAAAPAPRAAAA- 556

                        170       180
                 ....*....|....*....|
gi 392894540 367 STSSAPATAPEASRRDPSDV 386
Cdd:PRK12323 557 TEPVVAPRPPRASASGLPDM 576
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
234-435 7.39e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 49.87  E-value: 7.39e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 234 PRPVAGKPSTRSASTTGAARTRPAIPAVSAPRALTSRAPTGPACPTTTRSAAPATRTAVPPRATAPPKAASASKAPIRAP 313
Cdd:PRK12323 365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGP 444

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 314 IPAKSAPAPPRGAPAKAAKAEAIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAPATAPEASRRDPSDVTIVLDDS 393
Cdd:PRK12323 445 GGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAE 524

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 392894540 394 LFPEDfnqGSAPMDIVVIPPTPEPPRLEEARATHPKEPIVDA 435
Cdd:PRK12323 525 SIPDP---ATADPDDAFETLAPAPAAAPAPRAAAATEPVVAP 563
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
229-383 1.09e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 49.10  E-value: 1.09e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 229 PAPAVPRPVAGKPSTRSASTTGAARTRPAIPAVSAPRALTSRAPTGPACPTTTRSAAPATRTA-----VPPRATAPPKAA 303
Cdd:PRK12323 428 PAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPApadddPPPWEELPPEFA 507

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 304 SASKAPI-RAPIPAKSAPAPPRGAPAKAAKAEAIAQKKVAGKVQR-AAPSKPASAVSAPKATAPASTSSAPATAPEASRR 381
Cdd:PRK12323 508 SPAPAQPdAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRaAAATEPVVAPRPPRASASGLPDMFDGDWPALAAR 587


                 ..
gi 392894540 382 DP 383
Cdd:PRK12323 588 LP 589
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 197-309 2.24e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 47.88  E-value: 2.24e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 197 LARIQQSLDKAAKSLPflNAPTVKSKDALLDIPAPAVPRPVAgkpSTRSASTTGAARTRPAIPAVSAPRALTSRAPTGPA 276
Cdd:PRK14950 353 LAVIEALLVPVPAPQP--AKPTAAAPSPVRPTPAPSTRPKAA---AAANIPPKEPVRETATPPPVPPRPVAPPVPHTPES 427

                         90       100       110
                 ....*....|....*....|....*....|...
gi 392894540 277 CPTTTRSAAPATRTAVPPRATAPPKAASASKAP 309
Cdd:PRK14950 428 APKLTRAAIPVDEKPKYTPPAPPKEEEKALIAD 460
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
216-378 2.46e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 48.31  E-value: 2.46e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 216 APTVKSKDALLDIPAPAVPRPVAGKPSTRSASTTGAAR-TRPAIPAVSAPRALTSRAPTGPACPTTTRSAAPATRTAVPP 294
Cdd:PRK07003 445 GDAPVPAKANARASADSRCDERDAQPPADSGSASAPASdAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAA 524

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 295 RATAPPKAASASKAPIRAPIPAKSAPAPPRGAPAKAAKAEAIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAPAT 374
Cdd:PRK07003 525 AAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAA 604


                 ....
gi 392894540 375 APEA 378
Cdd:PRK07003 605 TGDA 608
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
284-540 2.92e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 47.95  E-value: 2.92e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 284 AAPATRTAVPPRATAPPKAASASKAPIRAPIPAKsapapprgapakaakaeaiaqkkvagkvqrAAPSKPASAVSAPKAT 363
Cdd:PRK12323 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAA------------------------------PAAAPAAAAAARAVAA 421

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 364 APASTSSAPATAPEASRRDPSdvtivlddslfpedfNQGSAPmdivviPPTPEPPRLEEARATHPKEPIVDAEDLAKAPQ 443
Cdd:PRK12323 422 APARRSPAPEALAAARQASAR---------------GPGGAP------APAPAPAAAPAAAARPAAAGPRPVAAAAAAAP 480

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 444 EVDDVANLADVEDEIPPPvgafkKPEPRPETIVAGGSGEDRIPEPVDAFKKPDPVELDDFDPLKPSHPDPSAPVVPSghl 523
Cdd:PRK12323 481 ARAAPAAAPAPADDDPPP-----WEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPR--- 552

                        250
                 ....*....|....*..
gi 392894540 524 ivatPDPELPNIVAAVP 540
Cdd:PRK12323 553 ----AAAATEPVVAPRP 565
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 245-379 3.23e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 47.67  E-value: 3.23e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 245 SASTTGAA-RTRPAIPAVSAPRALTSRAPTGPACPTTTRSAAPATRTAVPPRATAPPKAASASKAPIRAPIPAKSAPAPP 323
Cdd:PRK07764 366 SASDDERGlLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPA 445

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 392894540 324 RGAPAKAAKAEAIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAPATAPEAS 379
Cdd:PRK07764 446 GNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPA 501
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 246-378 3.61e-05

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 46.87  E-value: 3.61e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 246 ASTTGAARTRPAIPAVSAP---RALTSRAPTGPACPTTTRSAAPATRTAVPPRATAPPKAASASKAPIRAPiPAKSAPAP 322
Cdd:PTZ00436 193 AAAAAAAKQKAAAKKAAAPsgkKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAP-PAKAAAPP 271

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 392894540 323 PRGAPAKAAKAEAIAQKKVAGKVQRAAPSKpASAVSAPKATAPASTSSAPATAPEA 378
Cdd:PTZ00436 272 AKAAAPPAKAAAPPAKAAAPPAKAAAAPAK-AAAAPAKAAAAPAKAAAPPAKAAAP 326
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 257-515 3.70e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 47.67  E-value: 3.70e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 257 AIPAVSAPrALTSRAPTGPACPTTTRSAAPATRTAVPPRATAPPKAASASKAPIRAPIPAKSAPAPPRGAPAKAAKAEAI 336
Cdd:PRK07764 583 QVEAVVGP-APGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPD 661

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 337 AQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAPATAPEASrrdpsdvtivlddslfpedfnqgsapmdivviPPTPE 416
Cdd:PRK07764 662 ASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPA--------------------------------PAATP 709

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 417 PPRLEEARATHPKEPIVDAedlAKAPQEVDDVANLADVEDeiPPPVGAFKKPEPRPETIVAGGSGEDRIPEPVDAFKKPD 496
Cdd:PRK07764 710 PAGQADDPAAQPPQAAQGA---SAPSPAADDPVPLPPEPD--DPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEE 784

                        250
                 ....*....|....*....
gi 392894540 497 PVELDDFDPLKPSHPDPSA 515
Cdd:PRK07764 785 MAEDDAPSMDDEDRRDAEE 803
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 251-447 4.51e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 47.17  E-value: 4.51e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 251 AARTRPAIPAVSAPRALTSRAPTGPACPTTTRSAAPATRTAVPPRATAPPkaasaSKAPIRAPIPAKSAPAPPRGAPAKA 330
Cdd:PRK07994 358 AFHPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAP-----QQAPAVPLPETTSQLLAARQQLQRA 432

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 331 AKAEAIAQKKVAgKVQRAAPSKPASAVSAPKATAPASTSSAPAtAPEASRRDPSDvtivlddslfpedfnqgsAPMDIVV 410
Cdd:PRK07994 433 QGATKAKKSEPA-AASRARPVNSALERLASVRPAPSALEKAPA-KKEAYRWKATN------------------PVEVKKE 492

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 392894540 411 IPPTPEPPRleeARATHPKEPIVdAEDLAKAPQEVDD 447
Cdd:PRK07994 493 PVATPKALK---KALEHEKTPEL-AAKLAAEAIERDP 525
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
227-458 5.61e-05

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 46.91  E-value: 5.61e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 227 DIPAPAVPRPVAGKPSTRSASTTGAARTRPAIPAVSAPRALTSRAPTGPACPTTTRSAAPATRTAVPpratAPPKAASAS 306
Cdd:PRK12727  61 DTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQPVSVPRQAPAA----APVRAASIP 136

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 307 KAPIRAPIPAksapAPPRGAPAKAAKAEAIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAPATAPEASRRDPsdv 386
Cdd:PRK12727 137 SPAAQALAHA----AAVRTAPRQEHALSAVPEQLFADFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDD--- 209

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 392894540 387 tivlDDSLFPEDFNQGSAPMDIVviPPTPEPPrleeaRATHPKEPIVDAEDLAKAPQEVDDvANLADVEDEI 458
Cdd:PRK12727 210 ----DEQLDDDGFDLDDALPQIL--PPAALPP-----IVVAPAAPAALAAVAAAAPAPQND-EELKQLRGEL 269
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 291-418 1.71e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 45.09  E-value: 1.71e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 291 AVPPRATAPPKAASASKAPIRAPIPAKSAPAPPRGAPAKAAKAEAIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSS 370
Cdd:PRK14951 363 AFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAP 442

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 392894540 371 APATAPEASRRDPSDVTIVLDDSLFPEDFNQGSAPMDIVVIPPTPEPP 418
Cdd:PRK14951 443 AAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTP 490
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 229-580 5.09e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.82  E-value: 5.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 229 PAPAVPRPVAGKPSTRSASTTGAARTRPAIPAVSAPRALTSRAPTGPACPTTtrsAAPATRTAVPPRATAPPKAASASKA 308
Cdd:PRK07764 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPA---PAPPSPAGNAPAGGAPSPPPAAAPS 463

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 309 PIRAPIPAKSAPAPPRGAPAKAAKAEAIAQKKVAgkvQRAAPSKPASAVSAPKATAPA--------STSSAPATAPEASR 380
Cdd:PRK07764 464 AQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAP---AAPAAPAGADDAATLRERWPEilaavpkrSRKTWAILLPEATV 540

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 381 RDPSDVTIVL--DDSLFPEDFNQGSAPMDIV---------------VIPPTPEPPRLEEARATHPKEPIVDAEDLAKAPQ 443
Cdd:PRK07764 541 LGVRGDTLVLgfSTGGLARRFASPGNAEVLVtalaeelggdwqveaVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAA 620

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 444 EVDDVANLADVEDEIPPPVGAFKKPEPRPETIVAGGSGEDRIPEPVDafkkPDPVELDDFDPLKPSHPDPSAPVVPSGHL 523
Cdd:PRK07764 621 PAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGD----GWPAKAGGAAPAAPPPAPAPAAPAAPAGA 696

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 392894540 524 IVATPDPELPNIVAAVPFI--PPSPKGPNDGLVKLDDELEKIAPGFEEPLIPQAPRDDG 580
Cdd:PRK07764 697 APAQPAPAPAATPPAGQADdpAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAP 755
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 207-317 7.59e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.16  E-value: 7.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 207 AAKSLPFLNAPTVKSKDALLDIPAPAVPRPVAGKPSTRSASTTGAARTRPAIPAVSAPRALTSRAPTGPACPTTTRSAAP 286
Cdd:PRK14951 377 EKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAA 456

                         90       100       110
                 ....*....|....*....|....*....|.
gi 392894540 287 ATRTAVPPRATAPPKAASASKAPIRAPIPAK 317
Cdd:PRK14951 457 PETVAIPVRVAPEPAVASAAPAPAAAPAAAR 487
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 217-577 8.15e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 43.15  E-value: 8.15e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  217 PTVKSKDALLDipAPAVPRPVAGKPSTRSASTTGAARTRPAIPAVSAPRAltsraPTGPACPTTTRSAAPATRTAvppra 296
Cdd:PRK10263  302 PEYDEYDPLLN--GAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASV-----DVPPAQPTVAWQPVPGPQTG----- 369

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  297 tappkaasaskAPIRAPIPAKSAPAPPRGAPAKAAKAEAIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAPATAP 376
Cdd:PRK10263  370 -----------EPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAP 438

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  377 EASRRDPSDVTIVLDDSLFPEDFNQGSAPMDIVVIPPTPE--PPRLEEARATHPkEPIVDAEDLAKapqevddvanladv 454
Cdd:PRK10263  439 EQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYqqPQPVEQQPVVEP-EPVVEETKPAR-------------- 503

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  455 edeipPPVGAFKKPEPRpetivaggsgEDRIPEPVDAFKKPDPVELDDFDPLKPSHPDPSAPVVPSghlivatpdpelpn 534
Cdd:PRK10263  504 -----PPLYYFEEVEEK----------RAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPP-------------- 554

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 392894540  535 iVAAVPFIPPSPKGPNDGLVKLDDELEKIAPGF------------EEPLIPQAPR 577
Cdd:PRK10263  555 -VEAAAAVSPLASGVKKATLATGAAATVAAPVFslansggprpqvKEGIGPQLPR 608
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 192-547 8.68e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 43.24  E-value: 8.68e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  192 SGTSSLARIQQSLDKAAKSLPFLNAPTVKSKDALLDIPAPAVPRPVAGKPSTRSASTTGAARtrPAIPAVSAPRALTSRA 271
Cdd:PHA03307   16 EGGEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGT--EAPANESRSTPTWSLS 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  272 PTGPACPTTTRSAAPATRTAVPPRATAPPKAASASKAPIRAPIPAKSAPAPPRGAPAKAAKAEAIAQKKVAGKvqrAAPS 351
Cdd:PHA03307   94 TLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDA---ASSR 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  352 KPASAVSAPKATAPASTS---------SAPATAPEASRRDPSDVTIVLDDSLFPEDFNQGSAPMDIVVIPPTPEPPRLEE 422
Cdd:PHA03307  171 QAALPLSSPEETARAPSSppaepppstPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWG 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  423 ARATHPKEPivDAEDLAKAPQEVDDVANLADVEDEIPPPVGAFKKPEPRPETIVAGGSGEDRIPEPVDAFKKPDPVELDD 502
Cdd:PHA03307  251 PENECPLPR--PAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSS 328

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 392894540  503 FDplkPSHPDPSAPVVPSGHLIVATPDPELPnivaAVPFIPPSPK 547
Cdd:PHA03307  329 TS---SSSESSRGAAVSPGPSPSRSPSPSRP----PPPADPSSPR 366
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 229-318 8.85e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.78  E-value: 8.85e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 229 PAPAVPRPVAGKPstRSASTTGAARTRPAIPAVSAPRALTSRAPTGPACPTTTRSAAPATrtAVPPRATAPPKAASASKA 308
Cdd:PRK14951 381 PARPEAAAPAAAP--VAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAP--AAAPAAVALAPAPPAQAA 456

                         90
                 ....*....|
gi 392894540 309 PIRAPIPAKS 318
Cdd:PRK14951 457 PETVAIPVRV 466
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 228-383 9.54e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 42.93  E-value: 9.54e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 228 IPAPAVPRPVAGKPSTRSASTTGAARTRPAIPAVSAPRALTSRAPTGPACPTTTRSAAPATRT----------AVPPRAT 297
Cdd:PRK07994 365 LPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQqlqraqgatkAKKSEPA 444

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 298 APPKAASASKAPIRAPIPAKSAPAPPRGAPAKAAKAEAIAQKKVAGKVQRAAPSKPASAVSAPKATAPastssAPATAPE 377
Cdd:PRK07994 445 AASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPEL-----AAKLAAE 519


                 ....*.
gi 392894540 378 ASRRDP 383
Cdd:PRK07994 520 AIERDP 525
PHA03247 PHA03247
large tegument protein UL36; Provisional
 230-549 1.19e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.00  E-value: 1.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  230 APAVPRPvagkPSTRSASTTGAAR----------TRPAIPAVSAPRALTSrAPTGPACPTTTRS--------AAPATRTA 291
Cdd:PHA03247 2477 APVYRRP----AEARFPFAAGAAPdpggggppdpDAPPAPSRLAPAILPD-EPVGEPVHPRMLTwirgleelASDDAGDP 2551

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  292 VPPRATAPPKAASASKAPIRAPIPAKSAPAPPRGAPAKAAKAEAIAQKKVAGkvQRAAPSKPASAVSAPKATAPAStSSA 371
Cdd:PHA03247 2552 PPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVD--DRGDPRGPAPPSPLPPDTHAPD-PPP 2628

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  372 PATAPEASRRDPSDVTIVlddslfPEDFNQGSAPMdivviPPTPEPPR--LEEARATHPKEPIVDAEDLAkAPQEVDDVA 449
Cdd:PHA03247 2629 PSPSPAANEPDPHPPPTV------PPPERPRDDPA-----PGRVSRPRraRRLGRAAQASSPPQRPRRRA-ARPTVGSLT 2696

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  450 NLADvedeiPPPVGafKKPEPRPETIVAGgsgedrIPEPVDAFKKPDPVELDDFDPLKPshPDPSAPVVPSGHLIVATPD 529
Cdd:PHA03247 2697 SLAD-----PPPPP--PTPEPAPHALVSA------TPLPPGPAAARQASPALPAAPAPP--AVPAGPATPGGPARPARPP 2761

                         330       340
                  ....*....|....*....|
gi 392894540  530 PELPNIVAAVPFIPPSPKGP 549
Cdd:PHA03247 2762 TTAGPPAPAPPAAPAAGPPR 2781
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 255-384 1.37e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.39  E-value: 1.37e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 255 RPAIPAVSAPRALTSrAPTGPACPTTtrSAAPATRTAVPP-RATAPPKAASASKAPIRAPIPAKsapappRGAPAKAAKA 333
Cdd:PRK14951 365 KPAAAAEAAAPAEKK-TPARPEAAAP--AAAPVAQAAAAPaPAAAPAAAASAPAAPPAAAPPAP------VAAPAAAAPA 435

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 392894540 334 EAIAQKKVAGKVQRAAPSKPASAVSAPKA-----TAPASTSSAPATAPEASRRDPS 384
Cdd:PRK14951 436 AAPAAAPAAVALAPAPPAQAAPETVAIPVrvapePAVASAAPAPAAAPAAARLTPT 491
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
231-317 1.51e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 42.07  E-value: 1.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 231 PAVPRPVAGKPSTRSASTTGAARTRPAIPAVSAPRALTSRAPTGPacpttTRSAAPATRTAVPPRATAPPKAASASKAPI 310
Cdd:PRK14971 381 PVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPP-----TVSVDPPAAVPVNPPSTAPQAVRPAQFKEE 455


                 ....*..
gi 392894540 311 RAPIPAK 317
Cdd:PRK14971 456 KKIPVSK 462
rne PRK10811
ribonuclease E; Reviewed
 251-419 2.24e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 41.95  E-value: 2.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  251 AARTRPAIPAVSAPRALTSRAPTGPACPTTTrsAAPATRTAVPPRATAPPKAAsaskAPIRAPIPAKSAPAPPRGAPAKA 330
Cdd:PRK10811  871 AEVPVAAAVEPVVSAPVVEAVAEVVEEPVVV--AEPQPEEVVVVETTHPEVIA----APVTEQPQVITESDVAVAQEVAE 944

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  331 AKAEAIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAPATAPEASRRDPSDVTIVLDDSLFPEDFNQGSAPMDIVV 410
Cdd:PRK10811  945 HAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATAPMTRAP 1024

                         170
                  ....*....|
gi 392894540  411 IPP-TPEPPR 419
Cdd:PRK10811 1025 APEyVPEAPR 1034
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
280-477 2.73e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 41.13  E-value: 2.73e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 280 TTRSAAPATRTAVPPRATAPPKAASASKAPIRAPIPAKSAPAPPRGAPAKAAKAEAIAQKKVAGKVQRAAPSKPASAVSA 359
Cdd:PRK12727  57 TARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQPVSVPRQAPAAAPVRAASIP 136

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 360 PKATAPASTSSAPATAPEAsrrdpsdvtivldDSLFPEDFNQGSApmDIVVIPPTPEPPRLEEARATHPKEPIVDAEDLA 439
Cdd:PRK12727 137 SPAAQALAHAAAVRTAPRQ-------------EHALSAVPEQLFA--DFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAA 201

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 392894540 440 KAPQEVDDVANLADVEDEIPPPVGAFKKPEPRPETIVA 477
Cdd:PRK12727 202 HAAYAQDDDEQLDDDGFDLDDALPQILPPAALPPIVVA 239
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 262-376 3.16e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 41.41  E-value: 3.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  262 SAPRALTSRAPTGPACPTTTRSAAPATRTAVPPRATAPPKAasaskAPIRAPIPAKSApapprgapakaakaeaiaqkkv 341
Cdd:PRK12270   38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAA-----APAAPPKPAAAA---------------------- 90

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 392894540  342 agkvqrAAPSKPASAVSAPKATAPASTSSAPATAP 376
Cdd:PRK12270   91 ------AAAAAPAAPPAAAAAAAPAAAAVEDEVTP 119
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 213-375 3.48e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 41.06  E-value: 3.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  213 FLNAPTVKSKDALLDIPAPAVPRPVAGKPSTRSASTTGAArtrpaiPAVSAPRALTSRApTGPACPTTTRSAAPATRTAV 292
Cdd:pfam05109 421 FSKAPESTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTA------PASTGPTVSTADV-TSPTPAGTTSGASPVTPSPS 493

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540  293 P---------PRATAPPKAASASKAPIRAPIPAKSapaPPRGAPAKAAKAEAIAQKKVAGKVQRAAPSKPASAVSAPKAT 363
Cdd:pfam05109 494 PrdngteskaPDMTSPTSAVTTPTPNATSPTPAVT---TPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNAT 570

                         170
                  ....*....|..
gi 392894540  364 APASTSSAPATA 375
Cdd:pfam05109 571 IPTLGKTSPTSA 582
flhF PRK06995
flagellar biosynthesis protein FlhF;
266-389 5.33e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 40.33  E-value: 5.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 266 ALTSRAPTGPACPTTTRSAAPAT--RTAVPPRATAPPKAASASKAPI-RAPIPAKSAPAPPRGAPAKAAKAEAIAQKKVA 342
Cdd:PRK06995  50 ALAPPAAAAPAAAQPPPAAAPAAvsRPAAPAAEPAPWLVEHAKRLTAqREQLVARAAAPAAPEAQAPAAPAERAAAENAA 129

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 392894540 343 GKVQRAAPSKPASAVSAPkatapasTSSAPATAPEASRRDPSDVTIV 389
Cdd:PRK06995 130 RRLARAAAAAPRPRVPAD-------AAAAVADAVKARIERIVNDTVM 169
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 206-352 5.92e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 39.93  E-value: 5.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 206 KAAKSLPFLNAPTVKSKDALLDIPAPAVPRPVAGKPSTRSASTTGAArTRPAIPAvsAPRALTSRAPTGPACPTTTRSAA 285
Cdd:PTZ00436 215 KSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAA-APPAKAA--APPAKAAAPPAKAAAPPAKAAAP 291

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 392894540 286 PATRTAVPPRATAPPKAASASKAPIRAPiPAKSAPAPPRGAPAKAAKAEAIAQKKVAGKVQRAAPSK 352
Cdd:PTZ00436 292 PAKAAAAPAKAAAAPAKAAAAPAKAAAP-PAKAAAPPAKAATPPAKAAAPPAKAAAAPVGKKAGGKK 357
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 265-385 6.06e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.08  E-value: 6.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 265 RALTSRAPTGPACPTTTRSAAPATRTAVPPRATAPPKAASAskaPIRAPIPAKSAPAPPRGAPAKAAKAEAIAQKKVAGK 344
Cdd:PRK14951 360 RLLAFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAA---PAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAA 436

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 392894540 345 VQRAAPSKPASAVSAPKATAPASTSSAPATAPEASRRDPSD 385
Cdd:PRK14951 437 APAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAP 477
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 228-318 6.23e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 40.18  E-value: 6.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 228 IPAPAVPRPVAgKPSTRSASTTGAARTRPAiPAVSAPRALTSRAPTGPACPTTTRSAAPATRTAVPPRATAPPKAASASK 307
Cdd:PRK14950 356 IEALLVPVPAP-QPAKPTAAAPSPVRPTPA-PSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTR 433

                         90
                 ....*....|.
gi 392894540 308 APIRAPIPAKS 318
Cdd:PRK14950 434 AAIPVDEKPKY 444
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
 344-511 7.26e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 40.09  E-value: 7.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 344 KVQRAAPSKPASAVSAPKATAPASTSSAPATAPEASRRDPSDVTIVLDDSLfpedfNQGSAPMDIVVIPPTPEPPrLEEA 423
Cdd:PRK14949 642 DRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAAL-----ASGSAPAPPPVPDPYDRPP-WEEA 715

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 424 RAT--HPKEPIVDAEDLAKAPQEVDDVANLADVEDEIPPPVGafKKPEPRPETIVaggsgedriPEPVDAFKKPDPVELD 501
Cdd:PRK14949 716 PEVasANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQ--VQAEAQSPAST---------TALTQTSSEVQDTELN 784

                        170
                 ....*....|
gi 392894540 502 dfDPLKPSHP 511
Cdd:PRK14949 785 --LVLLSSGS 792
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 241-431 9.11e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 39.69  E-value: 9.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 241 PSTRSASTTGAARTRPAIPAVSAPRALTSrAPTGPACPTTTRSAAPATRTA---VPPRATAPPKAASASKApirAPIPAK 317
Cdd:PRK08691 380 PSAQTAEKETAAKKPQPRPEAETAQTPVQ-TASAAAMPSEGKTAGPVSNQEnndVPPWEDAPDEAQTAAGT---AQTSAK 455

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894540 318 SAPAPPRGAPAKAAKAEAIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSA--PATAPEASRRDPSDVTIVLDDSLF 395
Cdd:PRK08691 456 SIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPIQATPNDEAVETETFAheAPAEPFYGYGFPDNDCPPEDGAEI 535

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 392894540 396 PEdfnqgsAPMDIVVIPPTPEPPRLEEARATHPKEP 431
Cdd:PRK08691 536 PP------PDWEHAAPADTAGGGADEEAEAGGIGGN 565
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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