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Conserved domains on  [gi|115534117|ref|NP_497603|]
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Proton-coupled zinc antiporter SLC30A9, mitochondrial [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
FieF COG0053
Divalent metal cation (Fe/Co/Zn/Cd) efflux pump [Inorganic ion transport and metabolism];
164-490 4.13e-53

Divalent metal cation (Fe/Co/Zn/Cd) efflux pump [Inorganic ion transport and metabolism];


:

Pssm-ID: 439823 [Multi-domain]  Cd Length: 284  Bit Score: 180.69  E-value: 4.13e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117 164 RVVAIAFTLNLCDMAMKFTAAYLTGSKSLFAEAIHSAMDTCNQLILLLGIRYSAKNPDLLFPYGYGNMRYVTSLISGcGI 243
Cdd:COG0053    3 RAALASLAANLLLAVLKLVAGLLTGSVALLADALHSLSDLVASLLVLLGLRLAAKPADEEHPYGHGKAEYLASLIVA-VL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117 244 MAFGCGLSMYHGISGLLHPEPLEPLTYAYYALFMSLCFQGTSAITAYREvfakAKKANisiwnyvrtsaDPSLNVVLLED 323
Cdd:COG0053   82 ILLAGLFILYEAIERLLHPEPVEPSGLGLAVLLISIVVNEALARYLRRV----GKKTG-----------SPALKADALHD 146
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117 324 TAAVTGVGIALCAISLSSFLNSPIPDCCGSIVIGALLGTVASFIIRTNAAHLVGRSLPQRITDDIVARLNNDPMIRSVHD 403
Cdd:COG0053  147 RSDALTSLGVLIGLLLALLTGWPWLDPIAAILIGLLILKVAYKLARESLSLLMDEALDEELVERIRAIILSVPGVIGVHD 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117 404 VKATCLG----VEqsrfkAELDFDGRMitraylqegvhlpallnEVKKIDtedqlvvfmenhgekvidrlgDEIDRIEGE 479
Cdd:COG0053  227 LRTRKSGprifVD-----LHIEVDPDL-----------------TVEEAH---------------------DIADRIEAA 263
                        330
                 ....*....|.
gi 115534117 480 ITKKHPDIRHV 490
Cdd:COG0053  264 LREEFPGVADV 274
DBD_XPA-like cd21075
DNA-binding domain found in DNA repair protein complementing XP-A cells (XPA), yeast DNA ...
67-134 4.39e-12

DNA-binding domain found in DNA repair protein complementing XP-A cells (XPA), yeast DNA repair protein RAD14 and similar proteins; The family includes DNA repair protein complementing XP-A cells (XPA), yeast DNA repair protein RAD14, zinc transporter 9 (ZNT9) and similar proteins. XPA, also known as xeroderma pigmentosum group A-complementing protein (XPAC), is involved in DNA excision repair. It initiates repair by binding to damaged sites with various affinities, depending on the photoproduct and the transcriptional state of the region. Rad14 is involved in nucleotide excision repair. It binds specifically to damaged DNA and is required for the incision step. Rad14 is a component of the nucleotide excision repair factor 1 (NEF1) complex consisting of Rad1, Rad10 and Rad14. ZNT9, also known as solute carrier family 30 member 9 (SLC30A9), may act as a zinc transporter involved in intracellular zinc homeostasis and may also play a role as nuclear receptor coactivator. The model corresponds to the DNA-binding domain found in XPA and Rad14. It consists of a conserved N-terminal zinc-binding subdomain and a C-terminal alpha/beta fold subdomain. ZNT9 contains only C-terminal alpha/beta fold subdomain but lacks of N-terminal zinc-binding subdomain.


:

Pssm-ID: 410961  Cd Length: 67  Bit Score: 61.06  E-value: 4.39e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117  67 KIDKLSAMAEFGLKESDLEDLPSHSKPvlslTHHGKSNH--QLYTLTEVYHKALKVHGSTEALEAHRRPL 134
Cdd:cd21075    2 LITKTDAKKEYRLTDKDLAGLPYEEKP----NPHGPSAApmKLYLEREVERLAWRKHGGPEGLEAALEKR 67
 
Name Accession Description Interval E-value
FieF COG0053
Divalent metal cation (Fe/Co/Zn/Cd) efflux pump [Inorganic ion transport and metabolism];
164-490 4.13e-53

Divalent metal cation (Fe/Co/Zn/Cd) efflux pump [Inorganic ion transport and metabolism];


Pssm-ID: 439823 [Multi-domain]  Cd Length: 284  Bit Score: 180.69  E-value: 4.13e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117 164 RVVAIAFTLNLCDMAMKFTAAYLTGSKSLFAEAIHSAMDTCNQLILLLGIRYSAKNPDLLFPYGYGNMRYVTSLISGcGI 243
Cdd:COG0053    3 RAALASLAANLLLAVLKLVAGLLTGSVALLADALHSLSDLVASLLVLLGLRLAAKPADEEHPYGHGKAEYLASLIVA-VL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117 244 MAFGCGLSMYHGISGLLHPEPLEPLTYAYYALFMSLCFQGTSAITAYREvfakAKKANisiwnyvrtsaDPSLNVVLLED 323
Cdd:COG0053   82 ILLAGLFILYEAIERLLHPEPVEPSGLGLAVLLISIVVNEALARYLRRV----GKKTG-----------SPALKADALHD 146
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117 324 TAAVTGVGIALCAISLSSFLNSPIPDCCGSIVIGALLGTVASFIIRTNAAHLVGRSLPQRITDDIVARLNNDPMIRSVHD 403
Cdd:COG0053  147 RSDALTSLGVLIGLLLALLTGWPWLDPIAAILIGLLILKVAYKLARESLSLLMDEALDEELVERIRAIILSVPGVIGVHD 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117 404 VKATCLG----VEqsrfkAELDFDGRMitraylqegvhlpallnEVKKIDtedqlvvfmenhgekvidrlgDEIDRIEGE 479
Cdd:COG0053  227 LRTRKSGprifVD-----LHIEVDPDL-----------------TVEEAH---------------------DIADRIEAA 263
                        330
                 ....*....|.
gi 115534117 480 ITKKHPDIRHV 490
Cdd:COG0053  264 LREEFPGVADV 274
Cation_efflux pfam01545
Cation efflux family; Members of this family are integral membrane proteins, that are found to ...
177-376 2.80e-28

Cation efflux family; Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are thought to be efflux pumps that remove these ions from cells.


Pssm-ID: 426316 [Multi-domain]  Cd Length: 189  Bit Score: 110.82  E-value: 2.80e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117  177 MAMKFTAAYLTGSKSLFAEAIHSAMDTCNQLILLLGIRYSAKNPDLLFPYGYGNMRYVTSLISGCGIMAFGCGLsMYHGI 256
Cdd:pfam01545   3 ALVKLAAGLLTGSLALLADAVHSLIDLISSLLALLALRLSRKPPDERFPFGHGRLEPLAALVVGILLLGGGVFL-LYESI 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117  257 SGLLHPEPLEPLTYAYYALFMSLCFQGTSAITAYREvfakakkanisiwnyVRTSADPSLNVVLLE---DTAAVTGVGIA 333
Cdd:pfam01545  82 QRLLSPGEEIDPGLALILALVSLLVNLFLLLYLRRA---------------ARRIRSPALKADALHalsDVLASLGVLIS 146
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 115534117  334 LCAISLSSFLNSPIPDCCGSIVIGALLGTVASFIIRTNAAHLV 376
Cdd:pfam01545 147 ALLIYLGPITGGLLADPLASLLIGLLILYTALRLLKESLSILL 189
CDF TIGR01297
cation diffusion facilitator family transporter; This model describes a broadly distributed ...
177-426 1.81e-24

cation diffusion facilitator family transporter; This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273544 [Multi-domain]  Cd Length: 268  Bit Score: 102.30  E-value: 1.81e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117  177 MAMKFTAAYLTGSKSLFAEAIHSAMDTCNQLILLLGIRYSAKNPDLLFPYGYGNMRYVTSLISGCgIMAFGCGLSMYHGI 256
Cdd:TIGR01297   3 MLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALLNGL-FLVVVALFILYEAI 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117  257 SGLLHPEPLEPLTYAYYALFMSLCFQGTSAITAYREvfakAKKANisiwnyvrtsadpSLNV--VLLEDTAAVTGVGIAL 334
Cdd:TIGR01297  82 ERLINPEPEIDGGTMLIVAIVGLIVNLILALYLHRV----GHRLG-------------SLALraAALHVLSDALSSVGVL 144
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117  335 CAISLSSFlNSPIPDCCGSIVIGALLGTVASFIIRTNAAHLVGRSLPQRITDDIVARLNNDPMIRSVHDVKATCLGVEQS 414
Cdd:TIGR01297 145 IGALLIYF-GWHWADPIAALLISLLILYTAFRLLKESINVLLDAAPDEEDLEEIKKAILSIPGVKGVHDLHIWRIGPGKL 223
                         250
                  ....*....|..
gi 115534117  415 RFKAELDFDGRM 426
Cdd:TIGR01297 224 FLDVHVVVDPDL 235
DBD_XPA-like cd21075
DNA-binding domain found in DNA repair protein complementing XP-A cells (XPA), yeast DNA ...
67-134 4.39e-12

DNA-binding domain found in DNA repair protein complementing XP-A cells (XPA), yeast DNA repair protein RAD14 and similar proteins; The family includes DNA repair protein complementing XP-A cells (XPA), yeast DNA repair protein RAD14, zinc transporter 9 (ZNT9) and similar proteins. XPA, also known as xeroderma pigmentosum group A-complementing protein (XPAC), is involved in DNA excision repair. It initiates repair by binding to damaged sites with various affinities, depending on the photoproduct and the transcriptional state of the region. Rad14 is involved in nucleotide excision repair. It binds specifically to damaged DNA and is required for the incision step. Rad14 is a component of the nucleotide excision repair factor 1 (NEF1) complex consisting of Rad1, Rad10 and Rad14. ZNT9, also known as solute carrier family 30 member 9 (SLC30A9), may act as a zinc transporter involved in intracellular zinc homeostasis and may also play a role as nuclear receptor coactivator. The model corresponds to the DNA-binding domain found in XPA and Rad14. It consists of a conserved N-terminal zinc-binding subdomain and a C-terminal alpha/beta fold subdomain. ZNT9 contains only C-terminal alpha/beta fold subdomain but lacks of N-terminal zinc-binding subdomain.


Pssm-ID: 410961  Cd Length: 67  Bit Score: 61.06  E-value: 4.39e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117  67 KIDKLSAMAEFGLKESDLEDLPSHSKPvlslTHHGKSNH--QLYTLTEVYHKALKVHGSTEALEAHRRPL 134
Cdd:cd21075    2 LITKTDAKKEYRLTDKDLAGLPYEEKP----NPHGPSAApmKLYLEREVERLAWRKHGGPEGLEAALEKR 67
rad14 TIGR00598
DNA repair protein; All proteins in this family for which functions are known are used for the ...
68-157 2.58e-05

DNA repair protein; All proteins in this family for which functions are known are used for the recognition of DNA damage as part of nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273164  Cd Length: 172  Bit Score: 44.78  E-value: 2.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117   68 IDKLSAMAEFGLKESDLED----LPSHSKPVlslTHHGK-SNHQLYTLTEVYHKALKVHGSTEALEAH---RRPLVAMRK 139
Cdd:TIGR00598  35 LTKTEAKEEYLLKDCDLDKreplLRRIVKKN---PHNPRwGDMKLYLKLQVEKRALEVWGSEEALDEEkerREESKEEMK 111
                          90
                  ....*....|....*....
gi 115534117  140 ELTDAERMR-MRMRVETTN 157
Cdd:TIGR00598 112 EKKFEKKLKeLRRAVRSSE 130
fieF PRK09509
CDF family cation-efflux pump FieF;
157-289 1.54e-04

CDF family cation-efflux pump FieF;


Pssm-ID: 181919 [Multi-domain]  Cd Length: 299  Bit Score: 43.51  E-value: 1.54e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117 157 NQHKGadRVV---AIAFT-LNLCDMAMKFTAAYLTGSKSLFAEAIHSAMDTCNQLILLLGIRYSAKNPDLLFPYGYGNMR 232
Cdd:PRK09509   2 NQSYA--RLVsraAIAATaMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAE 79
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 115534117 233 YVTSL-----ISGCGIMAFgcglsmYHGISGLLHPEPLEPLTYAYY----ALFMSLC---FQ-------GTSAITA 289
Cdd:PRK09509  80 SLAALaqsmfISGSALFLF------LTGIQHLISPTPMNDPGVGIIvtlvALICTLIlvtFQrwvvrktQSQAVRA 149
 
Name Accession Description Interval E-value
FieF COG0053
Divalent metal cation (Fe/Co/Zn/Cd) efflux pump [Inorganic ion transport and metabolism];
164-490 4.13e-53

Divalent metal cation (Fe/Co/Zn/Cd) efflux pump [Inorganic ion transport and metabolism];


Pssm-ID: 439823 [Multi-domain]  Cd Length: 284  Bit Score: 180.69  E-value: 4.13e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117 164 RVVAIAFTLNLCDMAMKFTAAYLTGSKSLFAEAIHSAMDTCNQLILLLGIRYSAKNPDLLFPYGYGNMRYVTSLISGcGI 243
Cdd:COG0053    3 RAALASLAANLLLAVLKLVAGLLTGSVALLADALHSLSDLVASLLVLLGLRLAAKPADEEHPYGHGKAEYLASLIVA-VL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117 244 MAFGCGLSMYHGISGLLHPEPLEPLTYAYYALFMSLCFQGTSAITAYREvfakAKKANisiwnyvrtsaDPSLNVVLLED 323
Cdd:COG0053   82 ILLAGLFILYEAIERLLHPEPVEPSGLGLAVLLISIVVNEALARYLRRV----GKKTG-----------SPALKADALHD 146
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117 324 TAAVTGVGIALCAISLSSFLNSPIPDCCGSIVIGALLGTVASFIIRTNAAHLVGRSLPQRITDDIVARLNNDPMIRSVHD 403
Cdd:COG0053  147 RSDALTSLGVLIGLLLALLTGWPWLDPIAAILIGLLILKVAYKLARESLSLLMDEALDEELVERIRAIILSVPGVIGVHD 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117 404 VKATCLG----VEqsrfkAELDFDGRMitraylqegvhlpallnEVKKIDtedqlvvfmenhgekvidrlgDEIDRIEGE 479
Cdd:COG0053  227 LRTRKSGprifVD-----LHIEVDPDL-----------------TVEEAH---------------------DIADRIEAA 263
                        330
                 ....*....|.
gi 115534117 480 ITKKHPDIRHV 490
Cdd:COG0053  264 LREEFPGVADV 274
Cation_efflux pfam01545
Cation efflux family; Members of this family are integral membrane proteins, that are found to ...
177-376 2.80e-28

Cation efflux family; Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are thought to be efflux pumps that remove these ions from cells.


Pssm-ID: 426316 [Multi-domain]  Cd Length: 189  Bit Score: 110.82  E-value: 2.80e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117  177 MAMKFTAAYLTGSKSLFAEAIHSAMDTCNQLILLLGIRYSAKNPDLLFPYGYGNMRYVTSLISGCGIMAFGCGLsMYHGI 256
Cdd:pfam01545   3 ALVKLAAGLLTGSLALLADAVHSLIDLISSLLALLALRLSRKPPDERFPFGHGRLEPLAALVVGILLLGGGVFL-LYESI 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117  257 SGLLHPEPLEPLTYAYYALFMSLCFQGTSAITAYREvfakakkanisiwnyVRTSADPSLNVVLLE---DTAAVTGVGIA 333
Cdd:pfam01545  82 QRLLSPGEEIDPGLALILALVSLLVNLFLLLYLRRA---------------ARRIRSPALKADALHalsDVLASLGVLIS 146
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 115534117  334 LCAISLSSFLNSPIPDCCGSIVIGALLGTVASFIIRTNAAHLV 376
Cdd:pfam01545 147 ALLIYLGPITGGLLADPLASLLIGLLILYTALRLLKESLSILL 189
CDF TIGR01297
cation diffusion facilitator family transporter; This model describes a broadly distributed ...
177-426 1.81e-24

cation diffusion facilitator family transporter; This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273544 [Multi-domain]  Cd Length: 268  Bit Score: 102.30  E-value: 1.81e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117  177 MAMKFTAAYLTGSKSLFAEAIHSAMDTCNQLILLLGIRYSAKNPDLLFPYGYGNMRYVTSLISGCgIMAFGCGLSMYHGI 256
Cdd:TIGR01297   3 MLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALLNGL-FLVVVALFILYEAI 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117  257 SGLLHPEPLEPLTYAYYALFMSLCFQGTSAITAYREvfakAKKANisiwnyvrtsadpSLNV--VLLEDTAAVTGVGIAL 334
Cdd:TIGR01297  82 ERLINPEPEIDGGTMLIVAIVGLIVNLILALYLHRV----GHRLG-------------SLALraAALHVLSDALSSVGVL 144
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117  335 CAISLSSFlNSPIPDCCGSIVIGALLGTVASFIIRTNAAHLVGRSLPQRITDDIVARLNNDPMIRSVHDVKATCLGVEQS 414
Cdd:TIGR01297 145 IGALLIYF-GWHWADPIAALLISLLILYTAFRLLKESINVLLDAAPDEEDLEEIKKAILSIPGVKGVHDLHIWRIGPGKL 223
                         250
                  ....*....|..
gi 115534117  415 RFKAELDFDGRM 426
Cdd:TIGR01297 224 FLDVHVVVDPDL 235
CzcD COG1230
Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism];
159-404 3.03e-14

Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism];


Pssm-ID: 440843 [Multi-domain]  Cd Length: 294  Bit Score: 73.23  E-value: 3.03e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117 159 HKGADRVVAIAFTLNLCDMAMKFTAAYLTGSKSLFAEAIHSAMDTCNQLILLLGIRYSAKNPDLLFPYGYGNMRYVTSLI 238
Cdd:COG1230   13 AASSERRLLIALALTLGFMVVEIVGGLLSGSLALLADAGHMLSDALALGLALFAYRLARRPADARFTFGYKRAEILAALA 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117 239 SGcGIMAFGCGLSMYHGISGLLHPEPLEPLTYAYYALFmSLCFQGTSAItayreVFAKAKKANISIwnyvRtsadpSLNV 318
Cdd:COG1230   93 NA-LLLLVVAGYILYEAIQRLFNPPPVAGGGMLVVAVI-GLVVNLVSAW-----LLHRGSKHDLNL----R-----GAYL 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117 319 VLLEDTAAVTGVGIALCAIslsSFLNSPIPDCCGSIVIGAllgtvasFIIRtNAAHLVGRSL-------PQRI-TDDIVA 390
Cdd:COG1230  157 HVLADALGSVAVIVAALVI---LFTGWTWLDPLLSLLIAL-------LILR-SAWGLLRESLrillegvPDGIdLEEVRA 225
                        250
                 ....*....|....
gi 115534117 391 RLNNDPMIRSVHDV 404
Cdd:COG1230  226 ALEALPGVADVHDL 239
DBD_XPA-like cd21075
DNA-binding domain found in DNA repair protein complementing XP-A cells (XPA), yeast DNA ...
67-134 4.39e-12

DNA-binding domain found in DNA repair protein complementing XP-A cells (XPA), yeast DNA repair protein RAD14 and similar proteins; The family includes DNA repair protein complementing XP-A cells (XPA), yeast DNA repair protein RAD14, zinc transporter 9 (ZNT9) and similar proteins. XPA, also known as xeroderma pigmentosum group A-complementing protein (XPAC), is involved in DNA excision repair. It initiates repair by binding to damaged sites with various affinities, depending on the photoproduct and the transcriptional state of the region. Rad14 is involved in nucleotide excision repair. It binds specifically to damaged DNA and is required for the incision step. Rad14 is a component of the nucleotide excision repair factor 1 (NEF1) complex consisting of Rad1, Rad10 and Rad14. ZNT9, also known as solute carrier family 30 member 9 (SLC30A9), may act as a zinc transporter involved in intracellular zinc homeostasis and may also play a role as nuclear receptor coactivator. The model corresponds to the DNA-binding domain found in XPA and Rad14. It consists of a conserved N-terminal zinc-binding subdomain and a C-terminal alpha/beta fold subdomain. ZNT9 contains only C-terminal alpha/beta fold subdomain but lacks of N-terminal zinc-binding subdomain.


Pssm-ID: 410961  Cd Length: 67  Bit Score: 61.06  E-value: 4.39e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117  67 KIDKLSAMAEFGLKESDLEDLPSHSKPvlslTHHGKSNH--QLYTLTEVYHKALKVHGSTEALEAHRRPL 134
Cdd:cd21075    2 LITKTDAKKEYRLTDKDLAGLPYEEKP----NPHGPSAApmKLYLEREVERLAWRKHGGPEGLEAALEKR 67
NTD_ZNT9 cd21078
N-terminal domain found in zinc transporter 9 (ZNT9) and similar proteins; ZNT9, also known as ...
73-150 3.30e-07

N-terminal domain found in zinc transporter 9 (ZNT9) and similar proteins; ZNT9, also known as solute carrier family 30 member 9 (SLC30A9), may act as a zinc transporter involved in intracellular zinc homeostasis and may also play a role as nuclear receptor coactivator.


Pssm-ID: 410964  Cd Length: 89  Bit Score: 47.96  E-value: 3.30e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117  73 AMAEFGLKESDLEDLPSHSK--PvlsltHHGKSNHQLYTLTEVYHKALKVHGSTEALEAHRRplvaMRKELTDAERMRMR 150
Cdd:cd21078   10 AMNEYLLKPSDLEGLRKIKRrsP-----YDDEPPITVYLRSDVEAKAIEKWGSLEALEKERK----KRKEIEEAYREYLF 80
rad14 TIGR00598
DNA repair protein; All proteins in this family for which functions are known are used for the ...
68-157 2.58e-05

DNA repair protein; All proteins in this family for which functions are known are used for the recognition of DNA damage as part of nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273164  Cd Length: 172  Bit Score: 44.78  E-value: 2.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117   68 IDKLSAMAEFGLKESDLED----LPSHSKPVlslTHHGK-SNHQLYTLTEVYHKALKVHGSTEALEAH---RRPLVAMRK 139
Cdd:TIGR00598  35 LTKTEAKEEYLLKDCDLDKreplLRRIVKKN---PHNPRwGDMKLYLKLQVEKRALEVWGSEEALDEEkerREESKEEMK 111
                          90
                  ....*....|....*....
gi 115534117  140 ELTDAERMR-MRMRVETTN 157
Cdd:TIGR00598 112 EKKFEKKLKeLRRAVRSSE 130
fieF PRK09509
CDF family cation-efflux pump FieF;
157-289 1.54e-04

CDF family cation-efflux pump FieF;


Pssm-ID: 181919 [Multi-domain]  Cd Length: 299  Bit Score: 43.51  E-value: 1.54e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115534117 157 NQHKGadRVV---AIAFT-LNLCDMAMKFTAAYLTGSKSLFAEAIHSAMDTCNQLILLLGIRYSAKNPDLLFPYGYGNMR 232
Cdd:PRK09509   2 NQSYA--RLVsraAIAATaMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAE 79
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 115534117 233 YVTSL-----ISGCGIMAFgcglsmYHGISGLLHPEPLEPLTYAYY----ALFMSLC---FQ-------GTSAITA 289
Cdd:PRK09509  80 SLAALaqsmfISGSALFLF------LTGIQHLISPTPMNDPGVGIIvtlvALICTLIlvtFQrwvvrktQSQAVRA 149
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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