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Conserved domains on  [gi|17537201|ref|NP_496966|]
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Diphosphomevalonate decarboxylase [Caenorhabditis elegans]

Protein Classification

diphosphomevalonate/mevalonate 3,5-bisphosphate decarboxylase family protein( domain architecture ID 706585)

diphosphomevalonate/mevalonate 3,5-bisphosphate decarboxylase family protein similar to diphosphomevalonate decarboxylase (DMD) that catalyzes the decarboxylation of mevalonate 5-diphosphate (MVAPP) to isopentenyl diphosphate (IPP), and mevalonate 3,5-bisphosphate decarboxylase (MBD) that catalyzes the ATP-independent decarboxylation of (R)-mevalonate 3,5-bisphosphate to isopentenyl phosphate

EC:  4.1.1.-
Gene Ontology:  GO:0016831|GO:0008299
PubMed:  8382990|7947744|31268677

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
MDD_C super family cl28577
Mevalonate 5-diphosphate decarboxylase C-terminal domain; Mevalonate diphosphate decarboxylase ...
 12-332 5.92e-98

Mevalonate 5-diphosphate decarboxylase C-terminal domain; Mevalonate diphosphate decarboxylase (EC:4.1.1.33) catalyzes the ATP dependent decarboxylation of mevalonate 5-diphosphate (MVAPP) to form isopentenyl 5-diphosphate. The reaction is required for production of polyisoprenoids and sterols from acetyl-CoA. This entry represents the C-terminal domain of the mevalonate 5-diphosphate decarboxylase enzyme which is a member of the GHMP kinase superfamily.


The actual alignment was detected with superfamily member PLN02407:

Pssm-ID: 475042  Cd Length: 343  Bit Score: 294.78  E-value: 5.92e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201   12 ATVRVPMNIALVKYWGKRDDLLILPLNDSISLTVD--RLTAETTIRMVPGVGKHTVEINGKSVELSSnKRYQTVFDEaLR 89
Cdd:PLN02407   4 VTAQAPTNIAVIKYWGKRDEKLILPINSSISVTLDpdHLCATTTVAVSPSFDQDRLWLNGKEISLSG-GRYQNCLRE-IR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201   90 LQRKRKEAEASSADSNGNDPPPIfyHFHVTSTTNFPVAAGLASSAAGFAAIALAIQRILRLDDSQANRL---ARIGSGSA 166
Cdd:PLN02407  82 ARATDVEDEEKGIKITKKDWEKL--HVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELsaiARQGSGSA 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201  167 CRSMYGGLVHWRKGEMDDGSDCLAVRTEAAANWEDLYCIILVFDDGRKKVGSSEGMRRSRETSQLLKHRIESIVPQRIQQ 246
Cdd:PLN02407 160 CRSLYGGFVKWNMGKKEDGSDSIAVQLADEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSPLLQHRAKEVVPKRILQ 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201  247 IQEAYTSRNFEQLARVIMADSNQFHAVCMDSTPPIRYLNEASWQLIDTVEEFN--IGGIRAAYTFDAGPNACVIVQ-KEN 323
Cdd:PLN02407 240 MEEAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNrsEGTPQVAYTFDAGPNAVLIALnRKV 319


                 ....*....
gi 17537201  324 ASQFLKAVL 332
Cdd:PLN02407 320 AAQLLQRLL 328
 
Name Accession Description Interval E-value
PLN02407 PLN02407
diphosphomevalonate decarboxylase
 12-332 5.92e-98

diphosphomevalonate decarboxylase


Pssm-ID: 178029  Cd Length: 343  Bit Score: 294.78  E-value: 5.92e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201   12 ATVRVPMNIALVKYWGKRDDLLILPLNDSISLTVD--RLTAETTIRMVPGVGKHTVEINGKSVELSSnKRYQTVFDEaLR 89
Cdd:PLN02407   4 VTAQAPTNIAVIKYWGKRDEKLILPINSSISVTLDpdHLCATTTVAVSPSFDQDRLWLNGKEISLSG-GRYQNCLRE-IR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201   90 LQRKRKEAEASSADSNGNDPPPIfyHFHVTSTTNFPVAAGLASSAAGFAAIALAIQRILRLDDSQANRL---ARIGSGSA 166
Cdd:PLN02407  82 ARATDVEDEEKGIKITKKDWEKL--HVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELsaiARQGSGSA 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201  167 CRSMYGGLVHWRKGEMDDGSDCLAVRTEAAANWEDLYCIILVFDDGRKKVGSSEGMRRSRETSQLLKHRIESIVPQRIQQ 246
Cdd:PLN02407 160 CRSLYGGFVKWNMGKKEDGSDSIAVQLADEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSPLLQHRAKEVVPKRILQ 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201  247 IQEAYTSRNFEQLARVIMADSNQFHAVCMDSTPPIRYLNEASWQLIDTVEEFN--IGGIRAAYTFDAGPNACVIVQ-KEN 323
Cdd:PLN02407 240 MEEAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNrsEGTPQVAYTFDAGPNAVLIALnRKV 319


                 ....*....
gi 17537201  324 ASQFLKAVL 332
Cdd:PLN02407 320 AAQLLQRLL 328
MVD1 COG3407
Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]; Mevalonate ...
 7-337 1.13e-81

Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]; Mevalonate pyrophosphate decarboxylase is part of the Pathway/BioSystem: Isoprenoid biosynthesis


Pssm-ID: 442633  Cd Length: 322  Bit Score: 252.42  E-value: 1.13e-81
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201   7 AAEAEATVRVPMNIALVKYWGKRDDLLILPLNDSISLTVDRLTAETTIRMVPGVGKHTVEINGKSVELSSNKRYQTVFDe 86
Cdd:COG3407   1 MAMGSATARAHSNIALIKYWGKRDEELNLPANPSLSLTLDAFYTTTTVEFDKDLAEDEFILNGEPQKGKFLPKISKFLD- 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201  87 alrlqRKRKEAeassadsngndppPIFYHFHVTSTTNFP------------------VAAGLAssaagfaaialaiqriL 148
Cdd:COG3407  80 -----RVRALA-------------GKSYHARIESENNFPtaaglassasgfaalalaANSAEG----------------L 125

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201 149 RLDDSQANRLARIGSGSACRSMYGGLVHWRKGEMDDgsDCLAVRTeAAANWeDLYCIILVFDDGRKKVGSSEGMrRSRET 228
Cdd:COG3407 126 DLDDRKLSRLARLGSGSACRSIFGGFVEWGKGEDDE--DSYAVPI-PAEDW-DLADIILVVDKGEKKVSSREGM-KTAET 200

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201 229 SQLLKHRIESiVPQRIQQIQEAYTSRNFEQLARVIMADSNQFHAVCMDSTPPIRYLNEASWQLIDTVEEFNIGGIRAAYT 308
Cdd:COG3407 201 SPFYPAWVEQ-AEEDLEKLKEAIKAGDFEALGEIAESNALRMHATMMTSNPPFIYWKPNTLEVINAVRELREEGLPVYFT 279

                       330       340       350
                ....*....|....*....|....*....|..
gi 17537201 309 FDAGPNACVIVQKENA---SQFLKAVLQTIQV 337
Cdd:COG3407 280 LDAGPNVKVLCPEEDAekvAAFLAAELVNGQV 311
MDD_C pfam18376
Mevalonate 5-diphosphate decarboxylase C-terminal domain; Mevalonate diphosphate decarboxylase ...
 204-376 1.11e-72

Mevalonate 5-diphosphate decarboxylase C-terminal domain; Mevalonate diphosphate decarboxylase (EC:4.1.1.33) catalyzes the ATP dependent decarboxylation of mevalonate 5-diphosphate (MVAPP) to form isopentenyl 5-diphosphate. The reaction is required for production of polyisoprenoids and sterols from acetyl-CoA. This entry represents the C-terminal domain of the mevalonate 5-diphosphate decarboxylase enzyme which is a member of the GHMP kinase superfamily.


Pssm-ID: 465732  Cd Length: 186  Bit Score: 224.36  E-value: 1.11e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201   204 CIILVFDDGRKKVGSSEGMRRSRETSQLLKHRIESIVPQRIQQIQEAYTSRNFEQLARVIMADSNQFHAVCMDSTPPIRY 283
Cdd:pfam18376   1 VLILVVSDEKKEVSSTSGMQRSVETSPLLKHRAEHVVPERMEAMEKAILAKDFETFAEITMKDSNQFHAVCLDTYPPIFY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201   284 LNEASWQLIDTVEEFN--IGGIRAAYTFDAGPNACVIVQKENASQFLKAVLQTIQVPS------EDLQVIGKELAEQF-- 353
Cdd:pfam18376  81 LNDTSRAIIQLVHAYNefAGRIKVAYTFDAGPNAVLYLLEKDVPKVLSLLKHFFPPSTngdqffKGLPVLPSELSEELka 160

                         170       180
                  ....*....|....*....|....
gi 17537201   354 DVPAEPTTK-CSKLIMSPMGGGPQ 376
Cdd:pfam18376 161 SLAMKPIPGgVKYIIHTKVGDGPR 184
mevDPdecarb TIGR01240
diphosphomevalonate decarboxylase; This enzyme catalyzes the last step in the synthesis of ...
 12-326 6.41e-72

diphosphomevalonate decarboxylase; This enzyme catalyzes the last step in the synthesis of isopentenyl diphosphate (IPP) in the mevalonate pathway. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase [Central intermediary metabolism, Other]


Pssm-ID: 130307  Cd Length: 305  Bit Score: 226.75  E-value: 6.41e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201    12 ATVRVPMNIALVKYWGKRDDLLILPLNDSISLTVDRLTAETTIRMVPGVGKHTVEINGKSVELSSNKRYQTVFDEalrLQ 91
Cdd:TIGR01240   1 ASVTAYVNIATIKYWGKRNTKLNLPTNSSISLTLSQLRTLTSVAFADEFERDTFYLNGTLQHSIDNEKTSNCLDD---FR 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201    92 RKRKEAEassadsngndpppifyHFHVTSTTNFPVAAGLASSAAGFAAIALAIQRILRL--DDSQANRLARIGSGSACRS 169
Cdd:TIGR01240  78 QLRKEQE----------------KLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLplDTSELSRIARKGSGSACRS 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201   170 MYGGLVHWRKGEmdDGSDCLAVRTEAAANWEDLYCIILVFDDGRKKVGSSEGMRRSRETSQLLKHRIESIVPQrIQQIQE 249
Cdd:TIGR01240 142 LFGGYVAWEKGK--DDHSSAAVQVADDSDWPQ*AMCVLVVNDIKKDVSSRQGMQLTVATSELFKEWIEHVVPD-FEV*RK 218

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17537201   250 AYTSRNFEQLARVIMADSNQFHAVCMDSTPPIRYLNEASWQLIDTVEEFNIGGIRAAYTFDAGPNACVIVQKENASQ 326
Cdd:TIGR01240 219 AIKTKDFATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQGGTICYFTMDAGPNVKVLYLAENLSK 295
 
Name Accession Description Interval E-value
PLN02407 PLN02407
diphosphomevalonate decarboxylase
 12-332 5.92e-98

diphosphomevalonate decarboxylase


Pssm-ID: 178029  Cd Length: 343  Bit Score: 294.78  E-value: 5.92e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201   12 ATVRVPMNIALVKYWGKRDDLLILPLNDSISLTVD--RLTAETTIRMVPGVGKHTVEINGKSVELSSnKRYQTVFDEaLR 89
Cdd:PLN02407   4 VTAQAPTNIAVIKYWGKRDEKLILPINSSISVTLDpdHLCATTTVAVSPSFDQDRLWLNGKEISLSG-GRYQNCLRE-IR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201   90 LQRKRKEAEASSADSNGNDPPPIfyHFHVTSTTNFPVAAGLASSAAGFAAIALAIQRILRLDDSQANRL---ARIGSGSA 166
Cdd:PLN02407  82 ARATDVEDEEKGIKITKKDWEKL--HVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELsaiARQGSGSA 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201  167 CRSMYGGLVHWRKGEMDDGSDCLAVRTEAAANWEDLYCIILVFDDGRKKVGSSEGMRRSRETSQLLKHRIESIVPQRIQQ 246
Cdd:PLN02407 160 CRSLYGGFVKWNMGKKEDGSDSIAVQLADEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSPLLQHRAKEVVPKRILQ 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201  247 IQEAYTSRNFEQLARVIMADSNQFHAVCMDSTPPIRYLNEASWQLIDTVEEFN--IGGIRAAYTFDAGPNACVIVQ-KEN 323
Cdd:PLN02407 240 MEEAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNrsEGTPQVAYTFDAGPNAVLIALnRKV 319


                 ....*....
gi 17537201  324 ASQFLKAVL 332
Cdd:PLN02407 320 AAQLLQRLL 328
MVD1 COG3407
Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]; Mevalonate ...
 7-337 1.13e-81

Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]; Mevalonate pyrophosphate decarboxylase is part of the Pathway/BioSystem: Isoprenoid biosynthesis


Pssm-ID: 442633  Cd Length: 322  Bit Score: 252.42  E-value: 1.13e-81
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201   7 AAEAEATVRVPMNIALVKYWGKRDDLLILPLNDSISLTVDRLTAETTIRMVPGVGKHTVEINGKSVELSSNKRYQTVFDe 86
Cdd:COG3407   1 MAMGSATARAHSNIALIKYWGKRDEELNLPANPSLSLTLDAFYTTTTVEFDKDLAEDEFILNGEPQKGKFLPKISKFLD- 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201  87 alrlqRKRKEAeassadsngndppPIFYHFHVTSTTNFP------------------VAAGLAssaagfaaialaiqriL 148
Cdd:COG3407  80 -----RVRALA-------------GKSYHARIESENNFPtaaglassasgfaalalaANSAEG----------------L 125

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201 149 RLDDSQANRLARIGSGSACRSMYGGLVHWRKGEMDDgsDCLAVRTeAAANWeDLYCIILVFDDGRKKVGSSEGMrRSRET 228
Cdd:COG3407 126 DLDDRKLSRLARLGSGSACRSIFGGFVEWGKGEDDE--DSYAVPI-PAEDW-DLADIILVVDKGEKKVSSREGM-KTAET 200

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201 229 SQLLKHRIESiVPQRIQQIQEAYTSRNFEQLARVIMADSNQFHAVCMDSTPPIRYLNEASWQLIDTVEEFNIGGIRAAYT 308
Cdd:COG3407 201 SPFYPAWVEQ-AEEDLEKLKEAIKAGDFEALGEIAESNALRMHATMMTSNPPFIYWKPNTLEVINAVRELREEGLPVYFT 279

                       330       340       350
                ....*....|....*....|....*....|..
gi 17537201 309 FDAGPNACVIVQKENA---SQFLKAVLQTIQV 337
Cdd:COG3407 280 LDAGPNVKVLCPEEDAekvAAFLAAELVNGQV 311
MDD_C pfam18376
Mevalonate 5-diphosphate decarboxylase C-terminal domain; Mevalonate diphosphate decarboxylase ...
 204-376 1.11e-72

Mevalonate 5-diphosphate decarboxylase C-terminal domain; Mevalonate diphosphate decarboxylase (EC:4.1.1.33) catalyzes the ATP dependent decarboxylation of mevalonate 5-diphosphate (MVAPP) to form isopentenyl 5-diphosphate. The reaction is required for production of polyisoprenoids and sterols from acetyl-CoA. This entry represents the C-terminal domain of the mevalonate 5-diphosphate decarboxylase enzyme which is a member of the GHMP kinase superfamily.


Pssm-ID: 465732  Cd Length: 186  Bit Score: 224.36  E-value: 1.11e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201   204 CIILVFDDGRKKVGSSEGMRRSRETSQLLKHRIESIVPQRIQQIQEAYTSRNFEQLARVIMADSNQFHAVCMDSTPPIRY 283
Cdd:pfam18376   1 VLILVVSDEKKEVSSTSGMQRSVETSPLLKHRAEHVVPERMEAMEKAILAKDFETFAEITMKDSNQFHAVCLDTYPPIFY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201   284 LNEASWQLIDTVEEFN--IGGIRAAYTFDAGPNACVIVQKENASQFLKAVLQTIQVPS------EDLQVIGKELAEQF-- 353
Cdd:pfam18376  81 LNDTSRAIIQLVHAYNefAGRIKVAYTFDAGPNAVLYLLEKDVPKVLSLLKHFFPPSTngdqffKGLPVLPSELSEELka 160

                         170       180
                  ....*....|....*....|....
gi 17537201   354 DVPAEPTTK-CSKLIMSPMGGGPQ 376
Cdd:pfam18376 161 SLAMKPIPGgVKYIIHTKVGDGPR 184
mevDPdecarb TIGR01240
diphosphomevalonate decarboxylase; This enzyme catalyzes the last step in the synthesis of ...
 12-326 6.41e-72

diphosphomevalonate decarboxylase; This enzyme catalyzes the last step in the synthesis of isopentenyl diphosphate (IPP) in the mevalonate pathway. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase [Central intermediary metabolism, Other]


Pssm-ID: 130307  Cd Length: 305  Bit Score: 226.75  E-value: 6.41e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201    12 ATVRVPMNIALVKYWGKRDDLLILPLNDSISLTVDRLTAETTIRMVPGVGKHTVEINGKSVELSSNKRYQTVFDEalrLQ 91
Cdd:TIGR01240   1 ASVTAYVNIATIKYWGKRNTKLNLPTNSSISLTLSQLRTLTSVAFADEFERDTFYLNGTLQHSIDNEKTSNCLDD---FR 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201    92 RKRKEAEassadsngndpppifyHFHVTSTTNFPVAAGLASSAAGFAAIALAIQRILRL--DDSQANRLARIGSGSACRS 169
Cdd:TIGR01240  78 QLRKEQE----------------KLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLplDTSELSRIARKGSGSACRS 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17537201   170 MYGGLVHWRKGEmdDGSDCLAVRTEAAANWEDLYCIILVFDDGRKKVGSSEGMRRSRETSQLLKHRIESIVPQrIQQIQE 249
Cdd:TIGR01240 142 LFGGYVAWEKGK--DDHSSAAVQVADDSDWPQ*AMCVLVVNDIKKDVSSRQGMQLTVATSELFKEWIEHVVPD-FEV*RK 218

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17537201   250 AYTSRNFEQLARVIMADSNQFHAVCMDSTPPIRYLNEASWQLIDTVEEFNIGGIRAAYTFDAGPNACVIVQKENASQ 326
Cdd:TIGR01240 219 AIKTKDFATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQGGTICYFTMDAGPNVKVLYLAENLSK 295
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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