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Conserved domains on  [gi|17537017|ref|NP_496694|]
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Nematode Specific Peptide family, group E [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1412 super family cl06300
Protein of unknown function (DUF1412); This family consists of several Caenorhabditis elegans ...
 22-71 6.19e-26

Protein of unknown function (DUF1412); This family consists of several Caenorhabditis elegans proteins of around 70-75 residues in length. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam07203:

Pssm-ID: 311262  Cd Length: 53  Bit Score: 89.55  E-value: 6.19e-26
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 17537017   22 GIIRERRQA---YYTNGVVNNVVSDGLIGGPSSLGWAQVPHVASPMYNPVFGK 71
Cdd:pfam07203  1 GLIRQRRATqnyWNPNGVVNNMVSDNMAGGPTSLGWAQVPHVYSPMFSPVFGK 53
 
Name Accession Description Interval E-value
DUF1412 pfam07203
Protein of unknown function (DUF1412); This family consists of several Caenorhabditis elegans ...
 22-71 6.19e-26

Protein of unknown function (DUF1412); This family consists of several Caenorhabditis elegans proteins of around 70-75 residues in length. The function of this family is unknown.


Pssm-ID: 311262  Cd Length: 53  Bit Score: 89.55  E-value: 6.19e-26
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 17537017   22 GIIRERRQA---YYTNGVVNNVVSDGLIGGPSSLGWAQVPHVASPMYNPVFGK 71
Cdd:pfam07203  1 GLIRQRRATqnyWNPNGVVNNMVSDNMAGGPTSLGWAQVPHVYSPMFSPVFGK 53
 
Name Accession Description Interval E-value
DUF1412 pfam07203
Protein of unknown function (DUF1412); This family consists of several Caenorhabditis elegans ...
 22-71 6.19e-26

Protein of unknown function (DUF1412); This family consists of several Caenorhabditis elegans proteins of around 70-75 residues in length. The function of this family is unknown.


Pssm-ID: 311262  Cd Length: 53  Bit Score: 89.55  E-value: 6.19e-26
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 17537017   22 GIIRERRQA---YYTNGVVNNVVSDGLIGGPSSLGWAQVPHVASPMYNPVFGK 71
Cdd:pfam07203  1 GLIRQRRATqnyWNPNGVVNNMVSDNMAGGPTSLGWAQVPHVYSPMFSPVFGK 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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