NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|25152339|ref|NP_493829|]
View 

CASP-like protein [Caenorhabditis elegans]

Protein Classification

Claudin_3 domain-containing protein( domain architecture ID 10535243)

Claudin_3 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Claudin_3 pfam06653
Tight junction protein, Claudin-like; This is a family of probable membrane tight junction, ...
 1-103 2.11e-21

Tight junction protein, Claudin-like; This is a family of probable membrane tight junction, Claudin-like, proteins.


:

Pssm-ID: 399563  Cd Length: 164  Bit Score: 83.60  E-value: 2.11e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25152339     1 MFASIAFFVVLKIIFGLAQSLTTKSGFSFLTRILFFVIAGFSALTCLFMVTAVTLVGLDVKKFNDDNAKFNNisilkLGW 80
Cdd:pfam06653  60 MYISFALFIVLILIYIVAVRKVKKNGYSHSIRKLFFLIALLSLLIIILTVVAFILIAINLSSFNDSYNDSSY-----LGY 134

                          90       100
                  ....*....|....*....|...
gi 25152339    81 SAWMCVASAVLMAGSAALAVLIG 103
Cdd:pfam06653 135 SAWLAVISAILSLINVALSIHLA 157
 
Name Accession Description Interval E-value
Claudin_3 pfam06653
Tight junction protein, Claudin-like; This is a family of probable membrane tight junction, ...
 1-103 2.11e-21

Tight junction protein, Claudin-like; This is a family of probable membrane tight junction, Claudin-like, proteins.


Pssm-ID: 399563  Cd Length: 164  Bit Score: 83.60  E-value: 2.11e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25152339     1 MFASIAFFVVLKIIFGLAQSLTTKSGFSFLTRILFFVIAGFSALTCLFMVTAVTLVGLDVKKFNDDNAKFNNisilkLGW 80
Cdd:pfam06653  60 MYISFALFIVLILIYIVAVRKVKKNGYSHSIRKLFFLIALLSLLIIILTVVAFILIAINLSSFNDSYNDSSY-----LGY 134

                          90       100
                  ....*....|....*....|...
gi 25152339    81 SAWMCVASAVLMAGSAALAVLIG 103
Cdd:pfam06653 135 SAWLAVISAILSLINVALSIHLA 157
 
Name Accession Description Interval E-value
Claudin_3 pfam06653
Tight junction protein, Claudin-like; This is a family of probable membrane tight junction, ...
 1-103 2.11e-21

Tight junction protein, Claudin-like; This is a family of probable membrane tight junction, Claudin-like, proteins.


Pssm-ID: 399563  Cd Length: 164  Bit Score: 83.60  E-value: 2.11e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25152339     1 MFASIAFFVVLKIIFGLAQSLTTKSGFSFLTRILFFVIAGFSALTCLFMVTAVTLVGLDVKKFNDDNAKFNNisilkLGW 80
Cdd:pfam06653  60 MYISFALFIVLILIYIVAVRKVKKNGYSHSIRKLFFLIALLSLLIIILTVVAFILIAINLSSFNDSYNDSSY-----LGY 134

                          90       100
                  ....*....|....*....|...
gi 25152339    81 SAWMCVASAVLMAGSAALAVLIG 103
Cdd:pfam06653 135 SAWLAVISAILSLINVALSIHLA 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH