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Conserved domains on  [gi|17508317|ref|NP_493336|]
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Uncharacterized protein CELE_M01E5.4 [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
UPF0561 super family cl11200
Uncharacterized protein family UPF0561; This family of proteins has no known function.
8-43 6.15e-06

Uncharacterized protein family UPF0561; This family of proteins has no known function.


The actual alignment was detected with superfamily member pfam10573:

Pssm-ID: 287535  Cd Length: 120  Bit Score: 44.18  E-value: 6.15e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 17508317     8 RIDLNHGFLRFIRRNQVDRDEYNRVHEERKSEIRER 43
Cdd:pfam10573  15 RLDMSHGFLHHIRRNQIARDDYDKEVKQAKEKQRRR 50
 
Name Accession Description Interval E-value
UPF0561 pfam10573
Uncharacterized protein family UPF0561; This family of proteins has no known function.
8-43 6.15e-06

Uncharacterized protein family UPF0561; This family of proteins has no known function.


Pssm-ID: 287535  Cd Length: 120  Bit Score: 44.18  E-value: 6.15e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 17508317     8 RIDLNHGFLRFIRRNQVDRDEYNRVHEERKSEIRER 43
Cdd:pfam10573  15 RLDMSHGFLHHIRRNQIARDDYDKEVKQAKEKQRRR 50
 
Name Accession Description Interval E-value
UPF0561 pfam10573
Uncharacterized protein family UPF0561; This family of proteins has no known function.
8-43 6.15e-06

Uncharacterized protein family UPF0561; This family of proteins has no known function.


Pssm-ID: 287535  Cd Length: 120  Bit Score: 44.18  E-value: 6.15e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 17508317     8 RIDLNHGFLRFIRRNQVDRDEYNRVHEERKSEIRER 43
Cdd:pfam10573  15 RLDMSHGFLHHIRRNQIARDDYDKEVKQAKEKQRRR 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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