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Conserved domains on  [gi|17509625|ref|NP_492877|]
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Zinc finger protein ztf-6 [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SFP1 super family cl25788
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 346-435 1.78e-03

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


The actual alignment was detected with superfamily member COG5189:

Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 40.47  E-value: 1.78e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509625 346 TPMKVPKSENGAGYICPMDGCNKVFKEKGSVHRHFVThigmrfncDKCKASYTQKHALMLHQKIHANPDAYQCRGCGTNY 425
Cdd:COG5189 337 TPSRMLKVKDGKPYKCPVEGCNKKYKNQNGLKYHMLH--------GHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRY 408

                        90
                ....*....|
gi 17509625 426 TTQNGLRLHR 435
Cdd:COG5189 409 KNLNGLKYHR 418
 
Name Accession Description Interval E-value
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 346-435 1.78e-03

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 40.47  E-value: 1.78e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509625 346 TPMKVPKSENGAGYICPMDGCNKVFKEKGSVHRHFVThigmrfncDKCKASYTQKHALMLHQKIHANPDAYQCRGCGTNY 425
Cdd:COG5189 337 TPSRMLKVKDGKPYKCPVEGCNKKYKNQNGLKYHMLH--------GHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRY 408

                        90
                ....*....|
gi 17509625 426 TTQNGLRLHR 435
Cdd:COG5189 409 KNLNGLKYHR 418
 
Name Accession Description Interval E-value
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 346-435 1.78e-03

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 40.47  E-value: 1.78e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509625 346 TPMKVPKSENGAGYICPMDGCNKVFKEKGSVHRHFVThigmrfncDKCKASYTQKHALMLHQKIHANPDAYQCRGCGTNY 425
Cdd:COG5189 337 TPSRMLKVKDGKPYKCPVEGCNKKYKNQNGLKYHMLH--------GHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRY 408

                        90
                ....*....|
gi 17509625 426 TTQNGLRLHR 435
Cdd:COG5189 409 KNLNGLKYHR 418
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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