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Conserved domains on  [gi|392887147|ref|NP_492845|]
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FBA_2 domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
AMPKA_C_like super family cl17070
C-terminal regulatory domain of 5'-AMP-activated protein kinase (AMPK) alpha subunit and ...
41-96 5.16e-03

C-terminal regulatory domain of 5'-AMP-activated protein kinase (AMPK) alpha subunit and similar domains; This family is composed of AMPKs, microtubule-associated protein/microtubule affinity regulating kinases (MARKs), yeast Kcc4p-like proteins, plant calcineurin B-Like (CBL)-interacting protein kinases (CIPKs), and similar proteins. They are serine/threonine protein kinases (STKs) that catalyze the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. AMPKs act as sensors for the energy status of the cell and are activated by cellular stresses that lead to ATP depletion such as hypoxia, heat shock, and glucose deprivation, among others. MARKs phosphorylate the tau protein and related microtubule-associated proteins (MAPs) on tubulin binding sites to induce detachment from microtubules, and are involved in the regulation of cell shape and polarity, cell cycle control, transport, and the cytoskeleton. Kcc4p and related proteins are septin-associated proteins that are involved in septin organization and in the yeast morphogenesis checkpoint coordinating the cell cycle with bud formation. CIPKs interact with the calcineurin B-like (CBL) calcium sensors to form a signaling network that decode specific calcium signals triggered by a variety of environmental stimuli including salinity, drought, cold, light, and mechanical perturbation, among others. All members of this family contain an N-terminal catalytic kinase domain and a C-terminal regulatory domain which is also called kinase associated domain 1 (KA1) in some cases. The C-terminal regulatory domain serves as a protein interaction domain in AMPKs and CIPKs. In MARKs and Kcc4p-like proteins, this domain binds phospholipids and may be involved in membrane localization.


The actual alignment was detected with superfamily member cd12198:

Pssm-ID: 473060  Cd Length: 96  Bit Score: 33.74  E-value: 5.16e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 392887147  41 FIRRNIDLR-HGFKVRCQCEESFNKELL-FdipEIEIVhaQLISSGDFKGMKCKivRL 96
Cdd:cd12198   28 LAKKGIDCKqKGYTLRCKTKDDFGKVKLtF---ELEVC--RLPGLDEVVGIRRK--RL 78
 
Name Accession Description Interval E-value
MELK_C cd12198
C-terminal kinase associated domain 1 (KA1) of Maternal embryonic leucine zipper kinase; MELK, ...
41-96 5.16e-03

C-terminal kinase associated domain 1 (KA1) of Maternal embryonic leucine zipper kinase; MELK, also called protein kinase 38 (PK38) or pEg3 kinase, is a cell cycle-regulated serine/threonine protein kinase (STK) that catalyzes the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. It is phosphorylated and maximally active during mitosis and is involved in regulating cell cycle progression, division, proliferation, tumor growth, and mRNA splicing. MELK shows a broad substrate specificity, including the zinc finger-like protein ZPR9, the transcription and splicing factor NIPP1, and the protein-tyrosine phosphatase Cdc25B, among others. MELK contains an N-terminal catalytic domain followed by a ubiquitin-associated (UBA) domain, a TP dipeptide-rich region, and a C-terminal KA1 domain. The KA1 domain of MELK, together with its TP dipeptide-rich region, functions as an autoinhibitory domain. The KA1 domain of the related microtubule affinity-regulating kinases (MARKs) has been shown to bind anionic phospholipids and may be involved in membrane localization.


Pssm-ID: 213383  Cd Length: 96  Bit Score: 33.74  E-value: 5.16e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 392887147  41 FIRRNIDLR-HGFKVRCQCEESFNKELL-FdipEIEIVhaQLISSGDFKGMKCKivRL 96
Cdd:cd12198   28 LAKKGIDCKqKGYTLRCKTKDDFGKVKLtF---ELEVC--RLPGLDEVVGIRRK--RL 78
 
Name Accession Description Interval E-value
MELK_C cd12198
C-terminal kinase associated domain 1 (KA1) of Maternal embryonic leucine zipper kinase; MELK, ...
41-96 5.16e-03

C-terminal kinase associated domain 1 (KA1) of Maternal embryonic leucine zipper kinase; MELK, also called protein kinase 38 (PK38) or pEg3 kinase, is a cell cycle-regulated serine/threonine protein kinase (STK) that catalyzes the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. It is phosphorylated and maximally active during mitosis and is involved in regulating cell cycle progression, division, proliferation, tumor growth, and mRNA splicing. MELK shows a broad substrate specificity, including the zinc finger-like protein ZPR9, the transcription and splicing factor NIPP1, and the protein-tyrosine phosphatase Cdc25B, among others. MELK contains an N-terminal catalytic domain followed by a ubiquitin-associated (UBA) domain, a TP dipeptide-rich region, and a C-terminal KA1 domain. The KA1 domain of MELK, together with its TP dipeptide-rich region, functions as an autoinhibitory domain. The KA1 domain of the related microtubule affinity-regulating kinases (MARKs) has been shown to bind anionic phospholipids and may be involved in membrane localization.


Pssm-ID: 213383  Cd Length: 96  Bit Score: 33.74  E-value: 5.16e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 392887147  41 FIRRNIDLR-HGFKVRCQCEESFNKELL-FdipEIEIVhaQLISSGDFKGMKCKivRL 96
Cdd:cd12198   28 LAKKGIDCKqKGYTLRCKTKDDFGKVKLtF---ELEVC--RLPGLDEVVGIRRK--RL 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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