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Conserved domains on  [gi|17510901|ref|NP_492739|]
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SKA complex subunit 1 [Caenorhabditis elegans]

Protein Classification

SKA1_N domain-containing protein( domain architecture ID 10537454)

SKA1_N domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SKA1 pfam07160
Spindle and kinetochore-associated protein 1; Spindle and kinetochore-associated protein 1 ...
19-224 2.89e-68

Spindle and kinetochore-associated protein 1; Spindle and kinetochore-associated protein 1 (SKA1) is a component of the SKA1 complex (consists of Ska1, Ska2, and Ska3/Rama1), a microtubule-binding subcomplex of the outer kinetochore that is essential for proper chromosome segregation.


:

Pssm-ID: 462107  Cd Length: 237  Bit Score: 210.21  E-value: 2.89e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510901    19 CRENIPNFETTISPLLNTMKNIKLLLDDAAFDQQKLENNCEETC-----MNCTKSQLNDFLGIKVEASTIVDVKSQLVPQ 93
Cdd:pfam07160  19 SKTDLSKIDAEVSALEELLNAIKLELQEEEEAIPKLKKLIEASLkqqekLQHMKDNLPPHLPIKVAASSLETSSSVLPEE 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510901    94 SKESSALVetNEPNEQGLSSKPKENDIRIVPQITDEEFKTIPKYQLGRLTLEMMNEIVSKMDDFLMKKSKILGKTNKQLT 173
Cdd:pfam07160  99 STNTISSK--QKEEEAGPPKKPKGRPIKEVWYITTDEFDSIPSYMKGRLTLDKINAAIDEMNKAVTAKYKILHQPKKKLS 176
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 17510901   174 RSDREVLDNWRELEmkaRKRLPTTLFFIETDIRPMLQDRLRPSFAKAIPCL 224
Cdd:pfam07160 177 ESDRELYLRFKDEE---TKDTKGQHFFVEADIKEFTQLKLDKTFKAILTIL 224
 
Name Accession Description Interval E-value
SKA1 pfam07160
Spindle and kinetochore-associated protein 1; Spindle and kinetochore-associated protein 1 ...
19-224 2.89e-68

Spindle and kinetochore-associated protein 1; Spindle and kinetochore-associated protein 1 (SKA1) is a component of the SKA1 complex (consists of Ska1, Ska2, and Ska3/Rama1), a microtubule-binding subcomplex of the outer kinetochore that is essential for proper chromosome segregation.


Pssm-ID: 462107  Cd Length: 237  Bit Score: 210.21  E-value: 2.89e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510901    19 CRENIPNFETTISPLLNTMKNIKLLLDDAAFDQQKLENNCEETC-----MNCTKSQLNDFLGIKVEASTIVDVKSQLVPQ 93
Cdd:pfam07160  19 SKTDLSKIDAEVSALEELLNAIKLELQEEEEAIPKLKKLIEASLkqqekLQHMKDNLPPHLPIKVAASSLETSSSVLPEE 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510901    94 SKESSALVetNEPNEQGLSSKPKENDIRIVPQITDEEFKTIPKYQLGRLTLEMMNEIVSKMDDFLMKKSKILGKTNKQLT 173
Cdd:pfam07160  99 STNTISSK--QKEEEAGPPKKPKGRPIKEVWYITTDEFDSIPSYMKGRLTLDKINAAIDEMNKAVTAKYKILHQPKKKLS 176
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 17510901   174 RSDREVLDNWRELEmkaRKRLPTTLFFIETDIRPMLQDRLRPSFAKAIPCL 224
Cdd:pfam07160 177 ESDRELYLRFKDEE---TKDTKGQHFFVEADIKEFTQLKLDKTFKAILTIL 224
 
Name Accession Description Interval E-value
SKA1 pfam07160
Spindle and kinetochore-associated protein 1; Spindle and kinetochore-associated protein 1 ...
19-224 2.89e-68

Spindle and kinetochore-associated protein 1; Spindle and kinetochore-associated protein 1 (SKA1) is a component of the SKA1 complex (consists of Ska1, Ska2, and Ska3/Rama1), a microtubule-binding subcomplex of the outer kinetochore that is essential for proper chromosome segregation.


Pssm-ID: 462107  Cd Length: 237  Bit Score: 210.21  E-value: 2.89e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510901    19 CRENIPNFETTISPLLNTMKNIKLLLDDAAFDQQKLENNCEETC-----MNCTKSQLNDFLGIKVEASTIVDVKSQLVPQ 93
Cdd:pfam07160  19 SKTDLSKIDAEVSALEELLNAIKLELQEEEEAIPKLKKLIEASLkqqekLQHMKDNLPPHLPIKVAASSLETSSSVLPEE 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17510901    94 SKESSALVetNEPNEQGLSSKPKENDIRIVPQITDEEFKTIPKYQLGRLTLEMMNEIVSKMDDFLMKKSKILGKTNKQLT 173
Cdd:pfam07160  99 STNTISSK--QKEEEAGPPKKPKGRPIKEVWYITTDEFDSIPSYMKGRLTLDKINAAIDEMNKAVTAKYKILHQPKKKLS 176
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 17510901   174 RSDREVLDNWRELEmkaRKRLPTTLFFIETDIRPMLQDRLRPSFAKAIPCL 224
Cdd:pfam07160 177 ESDRELYLRFKDEE---TKDTKGQHFFVEADIKEFTQLKLDKTFKAILTIL 224
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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