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Conserved domains on  [gi|71982165|ref|NP_491804|]
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Olfactomedin-like domain-containing protein [Caenorhabditis elegans]

Protein Classification

olfactomedin domain-containing protein( domain architecture ID 10490292)

olfactomedin domain-containing protein adopts a five-bladed beta-propeller structure, similar to gliomedin that interacts with neuronal cell adhesion molecules such as neurofascin

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OLF pfam02191
Olfactomedin-like domain;
234-478 4.79e-84

Olfactomedin-like domain;


:

Pssm-ID: 460482  Cd Length: 246  Bit Score: 259.39  E-value: 4.79e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71982165   234 LQNVGKPVFHSHSTTYYGSWMRDAYPPTGddarKRYVM-NHFQGHELIEFRNEAEMRRDHVGKVHRLPYIFDGTNHVIFN 312
Cdd:pfam02191   1 LVSVSKPVTVKLSGGKYGAWMKDPLPPSD----KIYVTdRGTSGNTLREYASLDDFKNGSPSKKYKLPYPWQGTGHVVYN 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71982165   313 ASLFYQRAGYPIIAKYEFNSKQYS-QFEIPGAAYrGDQYLY-NNSMNYFDLAIDENALWVMFHYQE-EAFLSVAKVDINN 389
Cdd:pfam02191  77 GSLYYNKYNSRNIVKYDLTTRTVAaRRVLPGAGY-NNRFPYsWGGHTDIDLAVDENGLWVIYATEEnEGNIVVSKLDPET 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71982165   390 LTIYEAFNlTTVNHTDVANGIVVCGTIYLVESASEQSTYISTAYDFYRNTYSQPLIKWINLYKNANMISYNAYDKRIYIY 469
Cdd:pfam02191 156 LEVEQTWN-TSYPKRSAGNAFMVCGVLYAVRSVNTRREEIFYAFDTYTGKEEAVSIPFPNRYGKISMLDYNPRDKKLYAW 234


                  ....*....
gi 71982165   470 DHGYMLSVP 478
Cdd:pfam02191 235 DDGYQVTYP 243
 
Name Accession Description Interval E-value
OLF pfam02191
Olfactomedin-like domain;
234-478 4.79e-84

Olfactomedin-like domain;


Pssm-ID: 460482  Cd Length: 246  Bit Score: 259.39  E-value: 4.79e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71982165   234 LQNVGKPVFHSHSTTYYGSWMRDAYPPTGddarKRYVM-NHFQGHELIEFRNEAEMRRDHVGKVHRLPYIFDGTNHVIFN 312
Cdd:pfam02191   1 LVSVSKPVTVKLSGGKYGAWMKDPLPPSD----KIYVTdRGTSGNTLREYASLDDFKNGSPSKKYKLPYPWQGTGHVVYN 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71982165   313 ASLFYQRAGYPIIAKYEFNSKQYS-QFEIPGAAYrGDQYLY-NNSMNYFDLAIDENALWVMFHYQE-EAFLSVAKVDINN 389
Cdd:pfam02191  77 GSLYYNKYNSRNIVKYDLTTRTVAaRRVLPGAGY-NNRFPYsWGGHTDIDLAVDENGLWVIYATEEnEGNIVVSKLDPET 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71982165   390 LTIYEAFNlTTVNHTDVANGIVVCGTIYLVESASEQSTYISTAYDFYRNTYSQPLIKWINLYKNANMISYNAYDKRIYIY 469
Cdd:pfam02191 156 LEVEQTWN-TSYPKRSAGNAFMVCGVLYAVRSVNTRREEIFYAFDTYTGKEEAVSIPFPNRYGKISMLDYNPRDKKLYAW 234


                  ....*....
gi 71982165   470 DHGYMLSVP 478
Cdd:pfam02191 235 DDGYQVTYP 243
OLF smart00284
Olfactomedin-like domains;
234-475 7.61e-35

Olfactomedin-like domains;


Pssm-ID: 128580  Cd Length: 255  Bit Score: 130.72  E-value: 7.61e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71982165    234 LQNVGKPV-FHSHSTTYYGSWMRDAYPPTGDDARKRYVMNHFQGHELI-EFRNEAEMRRDHVGKVHRLPYIFDGTNHVIF 311
Cdd:smart00284   3 LAGISKPVtLQTSWKGKSGAWMKDPLWNTTKKSLYWYMPLNTRVLRSVrEYSSMSDFQMGKNPTDHPLPHAGQGTGVVVY 82

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71982165    312 NASLFYQRAGYPIIAKYEFNSKQYS-QFEIPGAAYRgDQYLYNNSMNY-FDLAIDENALWVMFHYQEEA-FLSVAKVDIN 388
Cdd:smart00284  83 NGSLYFNKFNSHDICRFDLTTETYQkEPLLNGAGYN-NRFPYAWGGFSdIDLAVDENGLWVIYATEQNAgKIVISKLNPA 161

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71982165    389 NLTIYEAFNlTTVNHTDVANGIVVCGTIYLVESASEQSTYISTAYDFYRNTYSQPLIKWINLYKNANMISYNAYDKRIYI 468
Cdd:smart00284 162 TLTIENTWI-TTYNKRSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYA 240


                   ....*..
gi 71982165    469 YDHGYML 475
Cdd:smart00284 241 WNNGHLV 247
 
Name Accession Description Interval E-value
OLF pfam02191
Olfactomedin-like domain;
234-478 4.79e-84

Olfactomedin-like domain;


Pssm-ID: 460482  Cd Length: 246  Bit Score: 259.39  E-value: 4.79e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71982165   234 LQNVGKPVFHSHSTTYYGSWMRDAYPPTGddarKRYVM-NHFQGHELIEFRNEAEMRRDHVGKVHRLPYIFDGTNHVIFN 312
Cdd:pfam02191   1 LVSVSKPVTVKLSGGKYGAWMKDPLPPSD----KIYVTdRGTSGNTLREYASLDDFKNGSPSKKYKLPYPWQGTGHVVYN 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71982165   313 ASLFYQRAGYPIIAKYEFNSKQYS-QFEIPGAAYrGDQYLY-NNSMNYFDLAIDENALWVMFHYQE-EAFLSVAKVDINN 389
Cdd:pfam02191  77 GSLYYNKYNSRNIVKYDLTTRTVAaRRVLPGAGY-NNRFPYsWGGHTDIDLAVDENGLWVIYATEEnEGNIVVSKLDPET 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71982165   390 LTIYEAFNlTTVNHTDVANGIVVCGTIYLVESASEQSTYISTAYDFYRNTYSQPLIKWINLYKNANMISYNAYDKRIYIY 469
Cdd:pfam02191 156 LEVEQTWN-TSYPKRSAGNAFMVCGVLYAVRSVNTRREEIFYAFDTYTGKEEAVSIPFPNRYGKISMLDYNPRDKKLYAW 234


                  ....*....
gi 71982165   470 DHGYMLSVP 478
Cdd:pfam02191 235 DDGYQVTYP 243
OLF smart00284
Olfactomedin-like domains;
234-475 7.61e-35

Olfactomedin-like domains;


Pssm-ID: 128580  Cd Length: 255  Bit Score: 130.72  E-value: 7.61e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71982165    234 LQNVGKPV-FHSHSTTYYGSWMRDAYPPTGDDARKRYVMNHFQGHELI-EFRNEAEMRRDHVGKVHRLPYIFDGTNHVIF 311
Cdd:smart00284   3 LAGISKPVtLQTSWKGKSGAWMKDPLWNTTKKSLYWYMPLNTRVLRSVrEYSSMSDFQMGKNPTDHPLPHAGQGTGVVVY 82

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71982165    312 NASLFYQRAGYPIIAKYEFNSKQYS-QFEIPGAAYRgDQYLYNNSMNY-FDLAIDENALWVMFHYQEEA-FLSVAKVDIN 388
Cdd:smart00284  83 NGSLYFNKFNSHDICRFDLTTETYQkEPLLNGAGYN-NRFPYAWGGFSdIDLAVDENGLWVIYATEQNAgKIVISKLNPA 161

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71982165    389 NLTIYEAFNlTTVNHTDVANGIVVCGTIYLVESASEQSTYISTAYDFYRNTYSQPLIKWINLYKNANMISYNAYDKRIYI 468
Cdd:smart00284 162 TLTIENTWI-TTYNKRSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYA 240


                   ....*..
gi 71982165    469 YDHGYML 475
Cdd:smart00284 241 WNNGHLV 247
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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