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Conserved domains on  [gi|17506177|ref|NP_491252|]
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Antibacterial factor-related peptide 2 [Caenorhabditis elegans]

Protein Classification

Antimicrobial25 domain-containing protein( domain architecture ID 11245672)

Antimicrobial25 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Antimicrobial25 pfam16839
Nematode antimicrobial peptide; This family of antimicrobial peptides is found in nematodes.
 24-77 1.42e-24

Nematode antimicrobial peptide; This family of antimicrobial peptides is found in nematodes.


:

Pssm-ID: 407086  Cd Length: 54  Bit Score: 86.87  E-value: 1.42e-24
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 17506177   24 TCARMDVPILKKAAQGLCITSCSMQNCGTGSCKKRSGRPTCVCYRCANGGGDIP 77
Cdd:pfam16839  1 TCARMDVPVLDKAAQGLCITSCSMQNCGTGYCKKRDGRPTCVCGRCANGGGNIP 54
 
Name Accession Description Interval E-value
Antimicrobial25 pfam16839
Nematode antimicrobial peptide; This family of antimicrobial peptides is found in nematodes.
 24-77 1.42e-24

Nematode antimicrobial peptide; This family of antimicrobial peptides is found in nematodes.


Pssm-ID: 407086  Cd Length: 54  Bit Score: 86.87  E-value: 1.42e-24
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 17506177   24 TCARMDVPILKKAAQGLCITSCSMQNCGTGSCKKRSGRPTCVCYRCANGGGDIP 77
Cdd:pfam16839  1 TCARMDVPVLDKAAQGLCITSCSMQNCGTGYCKKRDGRPTCVCGRCANGGGNIP 54
 
Name Accession Description Interval E-value
Antimicrobial25 pfam16839
Nematode antimicrobial peptide; This family of antimicrobial peptides is found in nematodes.
 24-77 1.42e-24

Nematode antimicrobial peptide; This family of antimicrobial peptides is found in nematodes.


Pssm-ID: 407086  Cd Length: 54  Bit Score: 86.87  E-value: 1.42e-24
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 17506177   24 TCARMDVPILKKAAQGLCITSCSMQNCGTGSCKKRSGRPTCVCYRCANGGGDIP 77
Cdd:pfam16839  1 TCARMDVPVLDKAAQGLCITSCSMQNCGTGYCKKRDGRPTCVCGRCANGGGNIP 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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