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Conserved domains on  [gi|17509941|ref|NP_490958|]
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5-methylcytosine rRNA methyltransferase nsun-4 [Caenorhabditis elegans]

Protein Classification

RsmB/NOP family class I SAM-dependent RNA methyltransferase( domain architecture ID 1000767)

RsmB/NOP family class I SAM-dependent RNA methyltransferase similar to Homo sapiens mitochondrial tRNA (cytosine(34)-C(5))-methyltransferase, which mediates methylation of cytosine to 5-methylcytosine (m5C) at position 34 of mt-tRNA(Met), and to 5-methylcytosine rRNA methyltransferase NSUN4 involved in mitochondrial ribosome small subunit (SSU) maturation by methylation of mitochondrial 12S rRNA

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RsmB super family cl33775
16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and ...
238-394 4.97e-28

16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family is part of the Pathway/BioSystem: 16S rRNA modification


The actual alignment was detected with superfamily member COG0144:

Pssm-ID: 439914 [Multi-domain]  Cd Length: 441  Bit Score: 115.49  E-value: 4.97e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941 238 DGGSLLPVLALGLQKDDSLLDMCAAPGGKSL-LAALSNLPSKIVCND---FKLARLGQ-LKRALMTYVpedsetidkfVL 312
Cdd:COG0144 235 DEASQLVALLLDPKPGERVLDLCAAPGGKTLhLAELMGNKGRVVAVDiseHRLKRLREnLARLGLSNV----------EV 304
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941 313 KRKDASDVKTWDEfEAYDKVLVDVPCStdrlsvstddgnlfSTGS-----------TQQRLD-LPVLQTKILVNALRSVK 380
Cdd:COG0144 305 VVADARELLEWLP-GKFDRVLLDAPCS--------------GTGTlrrhpdikwrrTPEDIAeLAALQRELLDAAARLLK 369
                       170
                ....*....|....
gi 17509941 381 VGGSVVYSTCTLSP 394
Cdd:COG0144 370 PGGRLVYSTCSLLP 383
 
Name Accession Description Interval E-value
RsmB COG0144
16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and ...
238-394 4.97e-28

16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 439914 [Multi-domain]  Cd Length: 441  Bit Score: 115.49  E-value: 4.97e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941 238 DGGSLLPVLALGLQKDDSLLDMCAAPGGKSL-LAALSNLPSKIVCND---FKLARLGQ-LKRALMTYVpedsetidkfVL 312
Cdd:COG0144 235 DEASQLVALLLDPKPGERVLDLCAAPGGKTLhLAELMGNKGRVVAVDiseHRLKRLREnLARLGLSNV----------EV 304
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941 313 KRKDASDVKTWDEfEAYDKVLVDVPCStdrlsvstddgnlfSTGS-----------TQQRLD-LPVLQTKILVNALRSVK 380
Cdd:COG0144 305 VVADARELLEWLP-GKFDRVLLDAPCS--------------GTGTlrrhpdikwrrTPEDIAeLAALQRELLDAAARLLK 369
                       170
                ....*....|....
gi 17509941 381 VGGSVVYSTCTLSP 394
Cdd:COG0144 370 PGGRLVYSTCSLLP 383
nop2p TIGR00446
NOL1/NOP2/sun family putative RNA methylase; [Protein synthesis, tRNA and rRNA base ...
234-394 2.84e-19

NOL1/NOP2/sun family putative RNA methylase; [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 188051 [Multi-domain]  Cd Length: 264  Bit Score: 87.14  E-value: 2.84e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941   234 YWLLDGGSLLPVLALGLQKDDSLLDMCAAPGGKSL-LAALSNLPSKIVCNDFK----------LARLGQLKRALMTYvpe 302
Cdd:TIGR00446  53 YYPQEASSMIPPIALEPREDERVLDMAAAPGGKTTqISQLMKNKGCIVANEISksrtkalisnINRMGVLNTIVINA--- 129
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941   303 DSETIDKFVLKrkdasdvktwdefeaYDKVLVDVPCSTDrlSVSTDDGNLFSTGSTQQRLDLPVLQTKILVNALRSVKVG 382
Cdd:TIGR00446 130 DGRKFGAYLLK---------------FDAILLDAPCSGE--GVIRKDPSRKRNWSEEDIKYCSLLQKELIDAAIDALKPG 192
                         170
                  ....*....|..
gi 17509941   383 GSVVYSTCTLSP 394
Cdd:TIGR00446 193 GVLVYSTCSLEV 204
PRK14902 PRK14902
16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB;
238-394 1.48e-18

16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB;


Pssm-ID: 237857 [Multi-domain]  Cd Length: 444  Bit Score: 87.54  E-value: 1.48e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941  238 DGGSLLPVLALGLQKDDSLLDMCAAPGGKSL-LAALSNLPSKIVCNDF---KLA-------RLGqlkralmtyvpedset 306
Cdd:PRK14902 236 DESSMLVAPALDPKGGDTVLDACAAPGGKTThIAELLKNTGKVVALDIhehKLKlieenakRLG---------------- 299
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941  307 IDKFVLKRKDASDVKtwDEFEA-YDKVLVDVPCStdrlsvstddgnlfstG-------------STQQRL-DLPVLQTKI 371
Cdd:PRK14902 300 LTNIETKALDARKVH--EKFAEkFDKILVDAPCS----------------GlgvirrkpdikynKTKEDIeSLQEIQLEI 361
                        170       180
                 ....*....|....*....|...
gi 17509941  372 LVNALRSVKVGGSVVYSTCTLSP 394
Cdd:PRK14902 362 LESVAQYLKKGGILVYSTCTIEK 384
Methyltr_RsmB-F pfam01189
16S rRNA methyltransferase RsmB/F; This is the catalytic core of this SAM-dependent 16S ...
245-394 1.41e-17

16S rRNA methyltransferase RsmB/F; This is the catalytic core of this SAM-dependent 16S ribosomal methyltransferase RsmB/F enzyme. There is a catalytic cysteine residue at 180 in UniProtKB:Q5SII2, with another highly conserved cysteine at residue 230. It methylates the C(5) position of cytosine 2870 (m5C2870) in 25S rRNA.


Pssm-ID: 426109 [Multi-domain]  Cd Length: 199  Bit Score: 80.93  E-value: 1.41e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941   245 VLALGLQKDDSLLDMCAAPGGK-SLLAALSNLPSKIVCNDFKLARLGQLKralmtyvpedsETIDKF-----VLKRKDAS 318
Cdd:pfam01189   1 AILLAPQEGETILDMCAAPGGKtTHIAELMKNQGTVVAVDINKHRLKRVA-----------ENIHRLgvtntIILNGDGR 69
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17509941   319 DVKTWDEFEAYDKVLVDVPCSTdrLSVSTDDGNLFSTGSTQQRLDLPVLQTKILVNALRSVKVGGSVVYSTCTLSP 394
Cdd:pfam01189  70 QPDQWLGGVLFDRILLDAPCSG--TGVIRRHPDVKWLRQEADIAQLAQLQKELLSAAIDLLKPGGVLVYSTCSVLP 143
 
Name Accession Description Interval E-value
RsmB COG0144
16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and ...
238-394 4.97e-28

16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 439914 [Multi-domain]  Cd Length: 441  Bit Score: 115.49  E-value: 4.97e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941 238 DGGSLLPVLALGLQKDDSLLDMCAAPGGKSL-LAALSNLPSKIVCND---FKLARLGQ-LKRALMTYVpedsetidkfVL 312
Cdd:COG0144 235 DEASQLVALLLDPKPGERVLDLCAAPGGKTLhLAELMGNKGRVVAVDiseHRLKRLREnLARLGLSNV----------EV 304
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941 313 KRKDASDVKTWDEfEAYDKVLVDVPCStdrlsvstddgnlfSTGS-----------TQQRLD-LPVLQTKILVNALRSVK 380
Cdd:COG0144 305 VVADARELLEWLP-GKFDRVLLDAPCS--------------GTGTlrrhpdikwrrTPEDIAeLAALQRELLDAAARLLK 369
                       170
                ....*....|....
gi 17509941 381 VGGSVVYSTCTLSP 394
Cdd:COG0144 370 PGGRLVYSTCSLLP 383
nop2p TIGR00446
NOL1/NOP2/sun family putative RNA methylase; [Protein synthesis, tRNA and rRNA base ...
234-394 2.84e-19

NOL1/NOP2/sun family putative RNA methylase; [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 188051 [Multi-domain]  Cd Length: 264  Bit Score: 87.14  E-value: 2.84e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941   234 YWLLDGGSLLPVLALGLQKDDSLLDMCAAPGGKSL-LAALSNLPSKIVCNDFK----------LARLGQLKRALMTYvpe 302
Cdd:TIGR00446  53 YYPQEASSMIPPIALEPREDERVLDMAAAPGGKTTqISQLMKNKGCIVANEISksrtkalisnINRMGVLNTIVINA--- 129
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941   303 DSETIDKFVLKrkdasdvktwdefeaYDKVLVDVPCSTDrlSVSTDDGNLFSTGSTQQRLDLPVLQTKILVNALRSVKVG 382
Cdd:TIGR00446 130 DGRKFGAYLLK---------------FDAILLDAPCSGE--GVIRKDPSRKRNWSEEDIKYCSLLQKELIDAAIDALKPG 192
                         170
                  ....*....|..
gi 17509941   383 GSVVYSTCTLSP 394
Cdd:TIGR00446 193 GVLVYSTCSLEV 204
PRK14902 PRK14902
16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB;
238-394 1.48e-18

16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB;


Pssm-ID: 237857 [Multi-domain]  Cd Length: 444  Bit Score: 87.54  E-value: 1.48e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941  238 DGGSLLPVLALGLQKDDSLLDMCAAPGGKSL-LAALSNLPSKIVCNDF---KLA-------RLGqlkralmtyvpedset 306
Cdd:PRK14902 236 DESSMLVAPALDPKGGDTVLDACAAPGGKTThIAELLKNTGKVVALDIhehKLKlieenakRLG---------------- 299
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941  307 IDKFVLKRKDASDVKtwDEFEA-YDKVLVDVPCStdrlsvstddgnlfstG-------------STQQRL-DLPVLQTKI 371
Cdd:PRK14902 300 LTNIETKALDARKVH--EKFAEkFDKILVDAPCS----------------GlgvirrkpdikynKTKEDIeSLQEIQLEI 361
                        170       180
                 ....*....|....*....|...
gi 17509941  372 LVNALRSVKVGGSVVYSTCTLSP 394
Cdd:PRK14902 362 LESVAQYLKKGGILVYSTCTIEK 384
Methyltr_RsmB-F pfam01189
16S rRNA methyltransferase RsmB/F; This is the catalytic core of this SAM-dependent 16S ...
245-394 1.41e-17

16S rRNA methyltransferase RsmB/F; This is the catalytic core of this SAM-dependent 16S ribosomal methyltransferase RsmB/F enzyme. There is a catalytic cysteine residue at 180 in UniProtKB:Q5SII2, with another highly conserved cysteine at residue 230. It methylates the C(5) position of cytosine 2870 (m5C2870) in 25S rRNA.


Pssm-ID: 426109 [Multi-domain]  Cd Length: 199  Bit Score: 80.93  E-value: 1.41e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941   245 VLALGLQKDDSLLDMCAAPGGK-SLLAALSNLPSKIVCNDFKLARLGQLKralmtyvpedsETIDKF-----VLKRKDAS 318
Cdd:pfam01189   1 AILLAPQEGETILDMCAAPGGKtTHIAELMKNQGTVVAVDINKHRLKRVA-----------ENIHRLgvtntIILNGDGR 69
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17509941   319 DVKTWDEFEAYDKVLVDVPCSTdrLSVSTDDGNLFSTGSTQQRLDLPVLQTKILVNALRSVKVGGSVVYSTCTLSP 394
Cdd:pfam01189  70 QPDQWLGGVLFDRILLDAPCSG--TGVIRRHPDVKWLRQEADIAQLAQLQKELLSAAIDLLKPGGVLVYSTCSVLP 143
rsmB TIGR00563
16S rRNA (cytosine(967)-C(5))-methyltransferase; This protein is also known as sun protein. ...
105-396 8.71e-15

16S rRNA (cytosine(967)-C(5))-methyltransferase; This protein is also known as sun protein. The reading frame was originally interpreted as two reading frames, fmu and fmv. The recombinant protein from E. coli was shown to methylate only C967 of small subunit (16S) ribosomal RNA and to produce only m5C at that position. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 273141 [Multi-domain]  Cd Length: 426  Bit Score: 76.06  E-value: 8.71e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941   105 DQAIETKRKSVEEKAN---RETQKVKHEISNPSTSTNTEDSEPDEAIFRSAAGLGEFRASAGELSSGSLQMGLgQSNQNK 181
Cdd:TIGR00563  96 EGAKAIKRKGLKGLVNgvlRRFQREQEELLAEFNALDARYLHPEWLVKRLQKAYPGQWQSICEANNQRPPMWL-RINRTK 174
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941   182 NVE---ITGFEGEGVRIPKRDhffYYPQAlhvrsfdraVLLDFPAPMKDEVGVPSYWLL--DGGSLLPVLALGLQKDDSL 256
Cdd:TIGR00563 175 HSRdewLALLAEAGMKGFPHD---LAPDA---------VRLETPAAVHALPGFEEGWVTvqDASAQWVATWLAPQNEETI 242
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941   257 LDMCAAPGGKSLLAALSNLPSKIVCNDFKLARLGQLKralmtyvpedsETIDKFVLKRK------DASDVKTWDEFEAYD 330
Cdd:TIGR00563 243 LDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVY-----------ENLKRLGLTIKaetkdgDGRGPSQWAENEQFD 311
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17509941   331 KVLVDVPCSTDRLSVSTDDGNLFSTGSTQQRLdLPvLQTKILVNALRSVKVGGSVVYSTCTLSPSQ 396
Cdd:TIGR00563 312 RILLDAPCSATGVIRRHPDIKWLRKPRDIAEL-AE-LQSEILDAIWPLLKTGGTLVYATCSVLPEE 375
PRK14904 PRK14904
16S rRNA methyltransferase B; Provisional
243-394 2.51e-12

16S rRNA methyltransferase B; Provisional


Pssm-ID: 237858 [Multi-domain]  Cd Length: 445  Bit Score: 68.55  E-value: 2.51e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941  243 LPVLALGLQKDDSLLDMCAAPGGKS-LLAALSNLPSKIVCNDF---KLARLGQLKRAL-MTYVpedsETIdkfvlkrkdA 317
Cdd:PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKStFMAELMQNRGQITAVDRypqKLEKIRSHASALgITII----ETI---------E 307
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941  318 SDVKTWDEFEAYDKVLVDVPCStdrlsvstddgnlfSTGSTQQRLD------------LPVLQTKILVNALRSVKVGGSV 385
Cdd:PRK14904 308 GDARSFSPEEQPDAILLDAPCT--------------GTGVLGRRAElrwkltpeklaeLVGLQAELLDHAASLLKPGGVL 373

                 ....*....
gi 17509941  386 VYSTCTLSP 394
Cdd:PRK14904 374 VYATCSIEP 382
PRK14901 PRK14901
16S rRNA methyltransferase B; Provisional
248-394 3.14e-11

16S rRNA methyltransferase B; Provisional


Pssm-ID: 237856 [Multi-domain]  Cd Length: 434  Bit Score: 64.95  E-value: 3.14e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941  248 LGLQKDDSLLDMCAAPGGKSL-LAALSNLPSKIVCNDFKLARLGQLKralmtyvpEDSEtidkfvlkRKDASDVKTW--- 323
Cdd:PRK14901 248 LDPQPGEVILDACAAPGGKTThIAELMGDQGEIWAVDRSASRLKKLQ--------ENAQ--------RLGLKSIKILaad 311
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941  324 --------DEFEAY-DKVLVDVPCS--------TD-RLSVSTDdgnlfstgSTQQrldLPVLQTKILVNALRSVKVGGSV 385
Cdd:PRK14901 312 srnllelkPQWRGYfDRILLDAPCSglgtlhrhPDaRWRQTPE--------KIQE---LAPLQAELLESLAPLLKPGGTL 380

                 ....*....
gi 17509941  386 VYSTCTLSP 394
Cdd:PRK14901 381 VYATCTLHP 389
PRK14903 PRK14903
16S rRNA methyltransferase B; Provisional
242-393 2.42e-10

16S rRNA methyltransferase B; Provisional


Pssm-ID: 184896 [Multi-domain]  Cd Length: 431  Bit Score: 62.20  E-value: 2.42e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941  242 LLPVLaLGLQKDDSLLDMCAAPGGKSL-LAALSNLPSKIVCNDFKLARLG----QLKRALMTYVPedsetidkfvLKRKD 316
Cdd:PRK14903 228 IVPLL-MELEPGLRVLDTCAAPGGKTTaIAELMKDQGKILAVDISREKIQlvekHAKRLKLSSIE----------IKIAD 296
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17509941  317 ASDVKTW--DEFeayDKVLVDVPCSTdrLSVSTDDGNLFSTGSTQQRLDLPVLQTKILVNALRSVKVGGSVVYSTCTLS 393
Cdd:PRK14903 297 AERLTEYvqDTF---DRILVDAPCTS--LGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370
PRK10901 PRK10901
16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB;
238-390 3.68e-09

16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB;


Pssm-ID: 236790 [Multi-domain]  Cd Length: 427  Bit Score: 58.66  E-value: 3.68e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941  238 DGGSLLPVLALGLQKDDSLLDMCAAPGGKS--LLAALSNLpsKIVCNDFKLARLGQLKralmtyvpedsETIDKFVLKRK 315
Cdd:PRK10901 230 DAAAQLAATLLAPQNGERVLDACAAPGGKTahILELAPQA--QVVALDIDAQRLERVR-----------ENLQRLGLKAT 296
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941  316 ----DASDVKTWDEFEAYDKVLVDVPCStdrlsvstddgnlfSTGS---------TQQRLDLPVL---QTKILvNAL-RS 378
Cdd:PRK10901 297 vivgDARDPAQWWDGQPFDRILLDAPCS--------------ATGVirrhpdikwLRRPEDIAALaalQSEIL-DALwPL 361
                        170
                 ....*....|..
gi 17509941  379 VKVGGSVVYSTC 390
Cdd:PRK10901 362 LKPGGTLLYATC 373
yebU PRK11933
rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
241-396 7.66e-09

rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed


Pssm-ID: 183387 [Multi-domain]  Cd Length: 470  Bit Score: 57.61  E-value: 7.66e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941  241 SLLPVLAL--GLQKDDSLLDMCAAPGGK-SLLAALSNLPSKIVCNDFKLARL----GQLKR-----ALMTYvpedsetid 308
Cdd:PRK11933 100 SMLPVAALfaDDNAPQRVLDMAAAPGSKtTQIAALMNNQGAIVANEYSASRVkvlhANISRcgvsnVALTH--------- 170
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17509941  309 kFvlkrkdasDVKTWDE--FEAYDKVLVDVPCS---TDRlsvstDDGNLFSTGSTQQRLDLPVLQTKILVNALRSVKVGG 383
Cdd:PRK11933 171 -F--------DGRVFGAalPETFDAILLDAPCSgegTVR-----KDPDALKNWSPESNLEIAATQRELIESAFHALKPGG 236
                        170
                 ....*....|...
gi 17509941  384 SVVYSTCTLSPSQ 396
Cdd:PRK11933 237 TLVYSTCTLNREE 249
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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