|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
271-740 |
3.32e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 3.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 271 EEEEVNLQQLTKALEEELRGIDGDHEQSNMLRALAALQATELGNYRLAyRQQHEENLKLRADNKAANQRVALLAVEVDER 350
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE-LAEAEEALLEAEAELAEAEEELEELAEELLE 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 351 HASLEDNSKKQVQQLEQRHASMVREITLRMTNDRDhwtsmtgkLEAQLKSLEQEEIRLRTELELVRTENTELESEQQKAH 430
Cdd:COG1196 391 ALRAAAELAAQLEELEEAEEALLERLERLEEELEE--------LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 431 IQITELLEQNIKLNQELAQTSSSIGGtpehspLRPRRHSEDKEEEMLQLMEKLAALQMENAQLRDKTDELTIEI------ 504
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAE------AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIgveaay 536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 505 --------ESLNVELIRSKTKAKKQEKQEKQEDQESAAT------ATKRRGDSPSKTHLTEESPRLGKQRKCTEGEQSDA 570
Cdd:COG1196 537 eaaleaalAAALQNIVVEDDEVAAAAIEYLKAAKAGRATflpldkIRARAALAAALARGAIGAAVDLVASDLREADARYY 616
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 571 SNSGDWLALNSELQRSQSQDEELTSLRQRVAELEEELKAAKEGRSLTPESRSKELETSLEQMQRAyedcEDYWQTKLSEE 650
Cdd:COG1196 617 VLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAEL----EELAERLAEEE 692
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 651 RQLFEKERQIYEDEQHESDKKFTELMEKVREYEEQfskDGRLSPIDERDMLEQQYSELEAEAAQLRSSSIQMLEEKAQEI 730
Cdd:COG1196 693 LELEEALLAEEEEERELAEAEEERLEEELEEEALE---EQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELEREL 769
|
490
....*....|
gi 665404360 731 SSLQSEIEDL 740
Cdd:COG1196 770 ERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
393-730 |
8.00e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 8.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 393 KLEAQLKSLEQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQNIKLNQE---LAQTSSSIGGTPEHSPLRPRRHS 469
Cdd:TIGR02168 688 ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEveqLEERIAQLSKELTELEAEIEELE 767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 470 EDKEEEMLQLME---KLAALQMENAQLRDKTDELTIEIESLNVELIRSKTKAKKQEKQEKQEDQESAATATkrrgdspSK 546
Cdd:TIGR02168 768 ERLEEAEEELAEaeaEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATER-------RL 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 547 THLTEESPRLGKQRKCTEGEQSDASNSGDWL--ALNSELQRSQSQDEELTSLRQRVAELEEELKAAkEGRSLTPESRSKE 624
Cdd:TIGR02168 841 EDLEEQIEELSEDIESLAAEIEELEELIEELesELEALLNERASLEEALALLRSELEELSEELREL-ESKRSELRRELEE 919
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 625 LETSLEQMQRAYEDCE---DYWQTKLSEERQLfekERQIYEDEQHESDKKFTELMEKVREYEEQFSKDGR--LSPIDERD 699
Cdd:TIGR02168 920 LREKLAQLELRLEGLEvriDNLQERLSEEYSL---TLEEAEALENKIEDDEEEARRRLKRLENKIKELGPvnLAAIEEYE 996
|
330 340 350
....*....|....*....|....*....|.
gi 665404360 700 MLEQQYSELEAEAAQLRsSSIQMLEEKAQEI 730
Cdd:TIGR02168 997 ELKERYDFLTAQKEDLT-EAKETLEEAIEEI 1026
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
458-740 |
2.66e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 2.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 458 PEHSPLRPRRHSEDKEEEMLQLMEKLAALQMENAQLRDKTDELTIEIESLNVELIRSKTKAKKQEKQEKQEDQESAATAT 537
Cdd:TIGR02168 668 TNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 538 KRRGDSPSKTHLTEEspRLGKQRKCTEGEQSDASNSGDWLALNSELQRSQSQ----DEELTSLRQRVAELEEEL------ 607
Cdd:TIGR02168 748 RIAQLSKELTELEAE--IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEElkalREALDELRAELTLLNEEAanlrer 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 608 -------KAAKEGRSLTPESRSKELETSLEQMQRAYEDCEDYwQTKLSEERQLFEKERQIYEDEQHESDKKFTELMEKVR 680
Cdd:TIGR02168 826 leslerrIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL-IEELESELEALLNERASLEEALALLRSELEELSEELR 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 681 EYEEQFSK--------DGRLSPIDER--------DMLEQQYSE---LEAEAAQLRSSSIQMLEEKAQ-EISSLQSEIEDL 740
Cdd:TIGR02168 905 ELESKRSElrreleelREKLAQLELRleglevriDNLQERLSEeysLTLEEAEALENKIEDDEEEARrRLKRLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
282-743 |
3.48e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 3.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 282 KALEEELRGIDGDHEQSNMLRALAALQATELGNYRLAYRQQHEEnlkLRADNKAANQRVALLAVEVdERHASLEDNSKKQ 361
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEE---LELELEEAQAEEYELLAEL-ARLEQDIARLEER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 362 VQQLEQRHAsmvreitlRMTNDRDHWTSMTGKLEAQLKSLEQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQNI 441
Cdd:COG1196 311 RRELEERLE--------ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 442 KLNQELAQTSSSIGGTpEHSPLRPRRHSEDKEEEMLQLMEKLAALQMENAQLRDKTDELTIEIESLNVELIRSKTKAKKQ 521
Cdd:COG1196 383 ELAEELLEALRAAAEL-AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 522 EKQEKQEDQESAATATKRRGDSPSKTHLTEESPRLGKQRKCTEGEQSD-------ASNSGDWLALNSELQRSQSQDEEL- 593
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvkaalllAGLRGLAGAVAVLIGVEAAYEAALe 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 594 -----------TSLRQRVAELEEELKAAKEGR----SLTPESRSKELETSLEQMQRAYE----DCEDYWQTKLSEERQLF 654
Cdd:COG1196 542 aalaaalqnivVEDDEVAAAAIEYLKAAKAGRatflPLDKIRARAALAAALARGAIGAAvdlvASDLREADARYYVLGDT 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 655 EKERQIYEDEQHESDKKFTELMEKVREyEEQFSKDGRLSPIDERDMLEQQYSELEAEAAQLRSSSIQMLEEKAQEISSLQ 734
Cdd:COG1196 622 LLGRTLVAARLEAALRRAVTLAGRLRE-VTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALL 700
|
....*....
gi 665404360 735 SEIEDLRQR 743
Cdd:COG1196 701 AEEEEEREL 709
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
578-754 |
6.33e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 6.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 578 ALNSELQRSQSQDEEL----TSLRQRVAELEEELKAAKEGRSlTPESRSKELETSLEQMQRAYEdcedywqtKLSEERQL 653
Cdd:TIGR02168 257 ELTAELQELEEKLEELrlevSELEEEIEELQKELYALANEIS-RLEQQKQILRERLANLERQLE--------ELEAQLEE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 654 FEKERQIYEDEQHESDKKFTELMEKVREYEEQFSKDGRlspidERDMLEQQYSELEAEAAQLRSSSIQMLEEKAQ---EI 730
Cdd:TIGR02168 328 LESKLDELAEELAELEEKLEELKEELESLEAELEELEA-----ELEELESRLEELEEQLETLRSKVAQLELQIASlnnEI 402
|
170 180
....*....|....*....|....
gi 665404360 731 SSLQSEIEDLRQRLGESVEILTGA 754
Cdd:TIGR02168 403 ERLEARLERLEDRRERLQQEIEEL 426
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
392-749 |
2.66e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 2.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 392 GKLEAQLKSLEQEEirLRTELELVRTENTELESEQQKAHIQITELLEQNIKLNQELAQTSSSIggtpehsplrprrhSED 471
Cdd:TIGR02169 221 REYEGYELLKEKEA--LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKI--------------KDL 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 472 KEEEMLQLMEKLAALQMENAQLRDKTDELTIEIESLNVEliRSKTKAKKQEKQEKQEDQESAATATKRRgdspsKTHLTE 551
Cdd:TIGR02169 285 GEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEER--LAKLEAEIDKLLAEIEELEREIEEERKR-----RDKLTE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 552 ESprlgkqrkctegeqsdasnsgdwlalnselqrsQSQDEELTSLRQRVAELEEELKAAKEgrsltpesRSKELETSLEQ 631
Cdd:TIGR02169 358 EY---------------------------------AELKEELEDLRAELEEVDKEFAETRD--------ELKDYREKLEK 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 632 MQRAYEDCEDYWQTKLSEERQLFEKERQIY------EDEQHESDKKFTELMEKVREYEEQFSkdgrlSPIDERDMLEQQY 705
Cdd:TIGR02169 397 LKREINELKRELDRLQEELQRLSEELADLNaaiagiEAKINELEEEKEDKALEIKKQEWKLE-----QLAADLSKYEQEL 471
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 665404360 706 SELEAEAAQLRSssiqmleekaqEISSLQSEIEDLRQRLGESVE 749
Cdd:TIGR02169 472 YDLKEEYDRVEK-----------ELSKLQRELAEAEAQARASEE 504
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
394-746 |
7.58e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 7.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 394 LEAQLKSLEQEEIRLRTELELvRTENTELESEQQKAHIQitelleqniKLNQELAQTSSSIggtpehsplrprrhsEDKE 473
Cdd:COG1196 198 LERQLEPLERQAEKAERYREL-KEELKELEAELLLLKLR---------ELEAELEELEAEL---------------EELE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 474 EEMLQLMEKLAALQMENAQLRDKTDELTIEIESLNVELIRSKTKAKKQEKqekqedqesaatatkrrgdspSKTHLTEES 553
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQ---------------------DIARLEERR 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 554 PRLGKQRkctegEQSDAsnsgdwlALNSELQRSQSQDEELTSLRQRVAELEEELKAAKEGRSLTPESRSKELETSLEQMQ 633
Cdd:COG1196 312 RELEERL-----EELEE-------ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 634 RAYEDcedyWQTKLSEERQLFEKERQIYEDEQHESDKKFTELMEKVREYEEQFSKDGRLSPIDERDMLEQQYSELEAEAA 713
Cdd:COG1196 380 ELEEL----AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
330 340 350
....*....|....*....|....*....|...
gi 665404360 714 QLRSSSIQMLEEKAQEISSLQSEIEDLRQRLGE 746
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAE 488
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
319-691 |
1.30e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 319 YRQQHEENLKLRADNKAANQRVALLAVEVDERHASLEDNSKKQVQQLEQRHAsmVREITLRMTNDRdhWTSMTGKLEA-- 396
Cdd:TIGR02168 170 YKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAE--LRELELALLVLR--LEELREELEElq 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 397 -QLKSLEQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQNIKLNQELAQTSSSIGGTPEhSPLRPRRHSEDKEEE 475
Cdd:TIGR02168 246 eELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRE-RLANLERQLEELEAQ 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 476 MLQLMEKLAALQMENAQLRDKTDELTIEIESLNVELIRSKTKAKKqekqekqedqesaatatkrrgdspSKTHLTEESPR 555
Cdd:TIGR02168 325 LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE------------------------LESRLEELEEQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 556 LGKQRKctegEQSDASNSGDwlALNSELQRSQSQDEELTSLRQR-VAELEEELKAAKEGRSLTPESRSKELETSLEQMQR 634
Cdd:TIGR02168 381 LETLRS----KVAQLELQIA--SLNNEIERLEARLERLEDRRERlQQEIEELLKKLEEAELKELQAELEELEEELEELQE 454
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 665404360 635 AYEDCEDYWQTKLSEERQLFEKERQIYEDEQHESDKKftELMEKVREYEEQFSKDGR 691
Cdd:TIGR02168 455 ELERLEEALEELREELEEAEQALDAAERELAQLQARL--DSLERLQENLEGFSEGVK 509
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
588-699 |
1.93e-05 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 48.15 E-value: 1.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 588 SQDEELTSLRQRVAELEEELKAAKEGRSLTPESRSKELETSLEQMQRAYEDCEDYWQtklsEERQLFEKERQIYEdEQHE 667
Cdd:COG0542 408 SKPEELDELERRLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWE----AEKELIEEIQELKE-ELEQ 482
|
90 100 110
....*....|....*....|....*....|....
gi 665404360 668 SDKKFTELMEKVREYEEQFSKDGRLSP--IDERD 699
Cdd:COG0542 483 RYGKIPELEKELAELEEELAELAPLLReeVTEED 516
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
578-771 |
5.14e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.85 E-value: 5.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 578 ALNSELQRSQSQDEELTSLRQRVAELEEELKAAKEGRSLTpESRSKELETSLEQMQRAYEDCEdywQTKLSEERQLFEKE 657
Cdd:COG1196 303 DIARLEERRRELEERLEELEEELAELEEELEELEEELEEL-EEELEEAEEELEEAEAELAEAE---EALLEAEAELAEAE 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 658 RQIYEDEQHESDKKFTELMEKVREYEEQFSKDGRLspiDERDMLEQQYSELEAEAAQLRSSSIQmLEEKAQEISSLQSEI 737
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEALL---ERLERLEEELEELEEALAELEEEEEE-EEEALEEAAEEEAEL 454
|
170 180 190
....*....|....*....|....*....|....
gi 665404360 738 EDLRQRLGESVEILTGACELTSESVAQLSAEAGK 771
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAE 488
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
317-637 |
8.07e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 8.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 317 LAYRQQHEENLKLRADNKAANQRVALLAVEVDERHASLEDNsKKQVQQLEQRhasmvreitlrmtndrdhwtsmtgkLEA 396
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEEL-RLELEELELE-------------------------LEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 397 QLKS---LEQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQNIKLNQELAQTSSSIggtpehsplrprrhsEDKE 473
Cdd:COG1196 286 AQAEeyeLLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEEL---------------EEAE 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 474 EEMLQLMEKLAALQMENAQLRDKTDELTIEIESLNVELIRSKTKAKKQEKQEKQEDQESAATATKRRgdspskTHLTEES 553
Cdd:COG1196 351 EELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLE------RLEEELE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 554 PRLGKQRKCTEGEQSDAsnsgdwLALNSELQRSQSQDEELTSLRQRVAELEEELKAAKEGRS--LTPESRSKELETSLEQ 631
Cdd:COG1196 425 ELEEALAELEEEEEEEE------EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAelLEELAEAAARLLLLLE 498
|
....*.
gi 665404360 632 MQRAYE 637
Cdd:COG1196 499 AEADYE 504
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
334-746 |
2.45e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 2.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 334 KAANQRVALLAVEVDERHASLEdnskkQVQQLEQRHASMVREITlRMTNDRDHWtsmtgKLEAQLKSLEQEEIRLRTELE 413
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQE-----ELEELEEELEELEAELE-ELREELEKL-----EKLLQLLPLYQELEALEAELA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 414 LVRTENTELESEQQkahiQITELLEQNIKLNQELAQTSSSIGgtpehspLRPRRHSEDKEEEMLQLMEKLAALQMENAQL 493
Cdd:COG4717 143 ELPERLEELEERLE----ELRELEEELEELEAELAELQEELE-------ELLEQLSLATEEELQDLAEELEELQQRLAEL 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 494 RDKTDELTIEIESLNVELIRSKTKAKKQEKQEK-QEDQESAATATKRRGDSPSKTHLTEESPRLGKQRKCTEGEQSDAsn 572
Cdd:COG4717 212 EEELEEAQEELEELEEELEQLENELEAAALEERlKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALL-- 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 573 sgdWLALNSELQRSQSQDEELTSLRQRVAELEEELKAAKEGRSLTPESRSKELETSLEQMQRAYEDCEDYWQTKLSEERQ 652
Cdd:COG4717 290 ---FLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLE 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 653 LFEKER-QIYEDEQHESDKKFTELMEKVREYEEqfsKDGRLSPIDERdmLEQQYSELEAEAAQLRSSSI-QMLEEKAQEI 730
Cdd:COG4717 367 ELEQEIaALLAEAGVEDEEELRAALEQAEEYQE---LKEELEELEEQ--LEELLGELEELLEALDEEELeEELEELEEEL 441
|
410
....*....|....*.
gi 665404360 731 SSLQSEIEDLRQRLGE 746
Cdd:COG4717 442 EELEEELEELREELAE 457
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
573-746 |
2.69e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.67 E-value: 2.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 573 SGDWLALNSELQRSQSQDEELTSLRQRVAELEEELKAA-KEGRSLTPESrSKELETSLEQMQRAYEDcedYWQTKLSE-E 650
Cdd:PRK03918 538 KGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELlKELEELGFES-VEELEERLKELEPFYNE---YLELKDAEkE 613
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 651 RQLFEKERQIYEDEQHESDKKFTELMEKVREYEEQFSKDGRLSPIDERDMLEQQYSELEAEAAQLRsSSIQMLEEKAQEI 730
Cdd:PRK03918 614 LEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLR-AELEELEKRREEI 692
|
170
....*....|....*.
gi 665404360 731 SSLqseIEDLRQRLGE 746
Cdd:PRK03918 693 KKT---LEKLKEELEE 705
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
558-746 |
2.77e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 2.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 558 KQRKCTEGEQSDASNSGDWLALNSELQRSQsqdEELTSLRQRVAELEEELKAAKEGRSlTPESRSKELETSLEQMQRAYE 637
Cdd:TIGR02169 707 LSQELSDASRKIGEIEKEIEQLEQEEEKLK---ERLEELEEDLSSLEQEIENVKSELK-ELEARIEELEEDLHKLEEALN 782
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 638 DCEDywqtKLSEER-QLFEKERQIYEDEQHESDKKFTELMEKV--REYEEQFSKDGRLSPIDERDMLEQQYSELEAEAAQ 714
Cdd:TIGR02169 783 DLEA----RLSHSRiPEIQAELSKLEEEVSRIEARLREIEQKLnrLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN 858
|
170 180 190
....*....|....*....|....*....|..
gi 665404360 715 LRSSsiqmLEEKAQEISSLQSEIEDLRQRLGE 746
Cdd:TIGR02169 859 LNGK----KEELEEELEELEAALRDLESRLGD 886
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
587-769 |
2.97e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 2.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 587 QSQDEELTSLRQRVAELEEELKAAK--------------------EGRSLTPESRSKELETSLEQMQRAYEDCEDYWQtK 646
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEkalaelrkeleeleeeleqlRKELEELSRQISALRKDLARLEAEVEQLEERIA-Q 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 647 LSEERQLFEKERQIYEDEQHESDKKFTELMEKVREYEEQFSKD-GRLSPIDER-DMLEQQYSELEAEAAQLRSSsiqmLE 724
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLkEELKALREAlDELRAELTLLNEEAANLRER----LE 827
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 665404360 725 EKAQEISSLQSEIEDLRQRLG---ESVEILTGACELTSESVAQLSAEA 769
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEelsEDIESLAAEIEELEELIEELESEL 875
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
591-743 |
4.31e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 4.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 591 EELTSLRQRVAELEEELKAAKEGRSLTpESRSKELETSLEQMQRAYedcedyWQTKLSEERQLfekERQIyedEQHESDK 670
Cdd:COG4913 288 RRLELLEAELEELRAELARLEAELERL-EARLDALREELDELEAQI------RGNGGDRLEQL---EREI---ERLEREL 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 671 KftELMEKVREYEEQFSKDGRLSPIDERDMLEQQ---------YSELEAEAAQLRSSSIQMLEEKAQEISSLQSEIEDLR 741
Cdd:COG4913 355 E--ERERRRARLEALLAALGLPLPASAEEFAALRaeaaalleaLEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
..
gi 665404360 742 QR 743
Cdd:COG4913 433 RR 434
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
619-772 |
1.18e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 619 ESRSKELETSLEQM-QRAYEDCEDYWQTKLSEERQLFEKERQIYEDEQHESDKKFTELMEKVREYEEQFSKdgrlspidE 697
Cdd:PRK12704 30 EAKIKEAEEEAKRIlEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDR--------K 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 665404360 698 RDMLEQQYSELEAEAAQlrsssiqmLEEKAQEISSLQSEIEDLRQrlgESVEILtgaceltsESVAQLSAEAGKS 772
Cdd:PRK12704 102 LELLEKREEELEKKEKE--------LEQKQQELEKKEEELEELIE---EQLQEL--------ERISGLTAEEAKE 157
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
321-668 |
1.19e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 321 QQHEENLKLRADNKAANQRVALLAvEVDERHASLEDnSKKQVQQLEQRHASMVREITLRMTNDRDHWTSMTGKLEAQLKS 400
Cdd:TIGR02169 221 REYEGYELLKEKEALERQKEAIER-QLASLEEELEK-LTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGE 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 401 LEQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQNIKLNQELAQtsssiggtpehspLRPRRHS-----EDKEEE 475
Cdd:TIGR02169 299 LEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEE-------------ERKRRDKlteeyAELKEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 476 MLQLMEKLAALQMENAQLRDKTDELTIEIESLNVELIRSKTkakkqekqekqedqesaatatkrrgdspskthlteESPR 555
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKR-----------------------------------ELDR 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 556 LGKQRKCTEGEQSDASNsgdwlALNSELQRSQSQDEELTSLRQRVAELEEELKAAKEGRSltpesrskELETSLEQMQRA 635
Cdd:TIGR02169 411 LQEELQRLSEELADLNA-----AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLS--------KYEQELYDLKEE 477
|
330 340 350
....*....|....*....|....*....|...
gi 665404360 636 YEDCEDYwQTKLSEERQLFEKERQIYEDEQHES 668
Cdd:TIGR02169 478 YDRVEKE-LSKLQRELAEAEAQARASEERVRGG 509
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
393-740 |
1.21e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 393 KLEAQLKSLEQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQNIKLNQELAQTSSSIGGTpehsplrpRRHSEDK 472
Cdd:TIGR04523 215 SLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQN--------NKKIKEL 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 473 EEEMLQLMEKLAALQMENAQlrDKTDELTIEIESLNVELIRSKTKakkqekqekQEDQESAATATKRRGDSPSKTHLTEE 552
Cdd:TIGR04523 287 EKQLNQLKSEISDLNNQKEQ--DWNKELKSELKNQEKKLEEIQNQ---------ISQNNKIISQLNEQISQLKKELTNSE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 553 SPRLGKQRKCTEGEQsdasnsgdwlALNSELQRSQSQDEELTSLRQRVAELEEELKAAKEgrsltpesRSKELETSLEQM 632
Cdd:TIGR04523 356 SENSEKQRELEEKQN----------EIEKLKKENQSYKQEIKNLESQINDLESKIQNQEK--------LNQQKDEQIKKL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 633 QRAYEDCEDYwQTKLSEERQLFEKERQIYEDEQHESDKKFTELmEKVREYEEQFSKDGRLSPIDERDMLEQQYSELEAEA 712
Cdd:TIGR04523 418 QQEKELLEKE-IERLKETIIKNNSEIKDLTNQDSVKELIIKNL-DNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKE 495
|
330 340 350
....*....|....*....|....*....|....
gi 665404360 713 AQLRS--SSIQMLEEK----AQEISSLQSEIEDL 740
Cdd:TIGR04523 496 KELKKlnEEKKELEEKvkdlTKKISSLKEKIEKL 529
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
596-769 |
1.30e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.62 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 596 LRQRVAELEEELKAAKEGRSLTPESRSKELETSLEQMQRAYEDCEDYWQT---------KLSEERQLFEKERQIYEDEQH 666
Cdd:COG1196 198 LERQLEPLERQAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAEleeleaeleELEAELAELEAELEELRLELE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 667 ESDKKFTELMEKVREYEEQFSK-DGRLSPIDERDM-LEQQYSELEAEAAQLRSSSIQM---LEEKAQEISSLQSEIEDLR 741
Cdd:COG1196 278 ELELELEEAQAEEYELLAELARlEQDIARLEERRReLEERLEELEEELAELEEELEELeeeLEELEEELEEAEEELEEAE 357
|
170 180
....*....|....*....|....*...
gi 665404360 742 QRLGESVEILTGACELTSESVAQLSAEA 769
Cdd:COG1196 358 AELAEAEEALLEAEAELAEAEEELEELA 385
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
303-513 |
1.77e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.96 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 303 ALAALQATELGNyrlayrQQHEENLKLRADNKAANQRVALLAVE-----VDERHASLEdnSKKQVQQLEQRHASMVREIT 377
Cdd:PRK10929 14 SWGAYAATAPDE------KQITQELEQAKAAKTPAQAEIVEALQsalnwLEERKGSLE--RAKQYQQVIDNFPKLSAELR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 378 LRMTNDRDHWTSMTGKLEAQlkSLEQEEIRLRTEL-ELVRtentELESEQQKAhIQITELL----EQNIKLNQELAQTSS 452
Cdd:PRK10929 86 QQLNNERDEPRSVPPNMSTD--ALEQEILQVSSQLlEKSR----QAQQEQDRA-REISDSLsqlpQQQTEARRQLNEIER 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 665404360 453 SIGGTPehSPLRPRRHSedkeeemlqlmeKLAALQMENAQLRDKTDELTIEIESLN--VELIR 513
Cdd:PRK10929 159 RLQTLG--TPNTPLAQA------------QLTALQAESAALKALVDELELAQLSANnrQELAR 207
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
587-776 |
2.80e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.07 E-value: 2.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 587 QSQDEELTSLRQRVAELEEELKAAKEGRSlTPESRSKELE--TSLEqmqrayEDCEDYWQTKLSEeRQLFEKERQIYEDE 664
Cdd:PRK05771 89 KDVEEELEKIEKEIKELEEEISELENEIK-ELEQEIERLEpwGNFD------LDLSLLLGFKYVS-VFVGTVPEDKLEEL 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 665 QHESDKKFTELMEKVREYeeqfskdGRLSPIDERDMLEQQYSEL---EAEAAQLRSSSI--QMLEEKAQEISSLQSEIED 739
Cdd:PRK05771 161 KLESDVENVEYISTDKGY-------VYVVVVVLKELSDEVEEELkklGFERLELEEEGTpsELIREIKEELEEIEKERES 233
|
170 180 190
....*....|....*....|....*....|....*..
gi 665404360 740 LRQRLGESVEILTgacELTSESVAQLSAEAGKSPASS 776
Cdd:PRK05771 234 LLEELKELAKKYL---EELLALYEYLEIELERAEALS 267
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
587-748 |
3.24e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 3.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 587 QSQDEELTSLRQRVAELEEELKAAKEGRSLTpESRSKELETSLEQMQRAYEDCE----------DYWQTKLSE-----ER 651
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAAL-EARLEAAKTELEDLEKEIKRLEleieeveariKKYEEQLGNvrnnkEY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 652 QLFEKERQIYEDEQHESDKKFTELMEKVREYEEQFSKdgrlspiderdmLEQQYSELEAEAAQLRSSSIQMLEEKAQEIS 731
Cdd:COG1579 92 EALQKEIESLKRRISDLEDEILELMERIEELEEELAE------------LEAELAELEAELEEKKAELDEELAELEAELE 159
|
170
....*....|....*..
gi 665404360 732 SLQSEIEDLRQRLGESV 748
Cdd:COG1579 160 ELEAEREELAAKIPPEL 176
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
265-507 |
3.58e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 3.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 265 HVLGFDeeeevNLQQLtKALEEELRGIDGDHEQSNMLRALAALQATELGNYRLAYrQQHEENLKLRADNKAANQRVAlla 344
Cdd:COG4913 602 YVLGFD-----NRAKL-AALEAELAELEEELAEAEERLEALEAELDALQERREAL-QRLAEYSWDEIDVASAEREIA--- 671
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 345 vEVDERHASLEDNSkkqvQQLEQrhasmvreitlrmtndrdhwtsmtgkLEAQLKSLEQEEIRLRTELELVRTENTELES 424
Cdd:COG4913 672 -ELEAELERLDASS----DDLAA--------------------------LEEQLEELEAELEELEEELDELKGEIGRLEK 720
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 425 EQQKAhiqitellEQNIKLNQELAQTSSSIGGTPEHSPLRPRRHSEDKEEEMLQLMEKLAAlqmENAQLRDKTDELTIEI 504
Cdd:COG4913 721 ELEQA--------EEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEE---RIDALRARLNRAEEEL 789
|
...
gi 665404360 505 ESL 507
Cdd:COG4913 790 ERA 792
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
548-715 |
4.10e-03 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 40.81 E-value: 4.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 548 HLTEESPRLGKQRKCTEGEQSDASnsgdwlaLNSELQRSQSQDEEltslrQRVAELEEELKAAKEGRSLtpesrskeLET 627
Cdd:pfam05911 685 RLKEEFEQLKSEKENLEVELASCT-------ENLESTKSQLQESE-----QLIAELRSELASLKESNSL--------AET 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 628 SLEQMQRAYEDCE---DYWQTKLSEERQLFEKerqiYEDEQHESDKKFTELMEKVREYEEQF----SKDGRLSPIDERDM 700
Cdd:pfam05911 745 QLKCMAESYEDLEtrlTELEAELNELRQKFEA----LEVELEEEKNCHEELEAKCLELQEQLerneKKESSNCDADQEDK 820
|
170
....*....|....*
gi 665404360 701 LEQQYSELEAEAAQL 715
Cdd:pfam05911 821 KLQQEKEITAASEKL 835
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
587-749 |
4.42e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 4.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 587 QSQDEELTSLRQRVAELEEELKAAKEgrsltpesRSKELETSLEQMQRAYEDcedywqTKLSEERQLFEKERQIYEDEQH 666
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRK--------ELEEAEAALEEFRQKNGL------VDLSEEAKLLLQQLSELESQLA 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 667 ESDKKFTELMEKVREYEEQFSKDGRLSPIDERD----MLEQQYSELEAEAAQLRSSsiqmLEEKAQEISSLQSEIEDLRQ 742
Cdd:COG3206 230 EARAELAEAEARLAALRAQLGSGPDALPELLQSpviqQLRAQLAELEAELAELSAR----YTPNHPDVIALRAQIAALRA 305
|
....*..
gi 665404360 743 RLGESVE 749
Cdd:COG3206 306 QLQQEAQ 312
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
572-751 |
4.69e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 4.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 572 NSGDWLALNSELQRSQSQDEELTSLRQRVAELEEELKAAkegrsltpESRSKELETSLEQMQRAyEDCEDYWQTKLSEER 651
Cdd:COG4717 69 NLKELKELEEELKEAEEKEEEYAELQEELEELEEELEEL--------EAELEELREELEKLEKL-LQLLPLYQELEALEA 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 652 QLFEKERQIyedeqhesdkkfTELMEKVREYEEqfskdgrlspiderdmLEQQYSELEAEAAQLRSSSIQMLE----EKA 727
Cdd:COG4717 140 ELAELPERL------------EELEERLEELRE----------------LEEELEELEAELAELQEELEELLEqlslATE 191
|
170 180
....*....|....*....|....
gi 665404360 728 QEISSLQSEIEDLRQRLGESVEIL 751
Cdd:COG4717 192 EELQDLAEELEELQQRLAELEEEL 215
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
556-749 |
5.19e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.44 E-value: 5.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 556 LGKQRKCT-EGEQSDASNS--GDWLALNSELQRSQSQDEELTSLRQRVAELEEELKAAKEGRSltpesrskELETSLEQM 632
Cdd:TIGR02169 636 MGKYRMVTlEGELFEKSGAmtGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELR--------RIENRLDEL 707
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 633 QRAYEDCEdywqtklsEERQLFEKERQIYEDEQHESDKKFTELMEKVREYEEqfskdGRLSPIDERDMLEQQYSELEAEA 712
Cdd:TIGR02169 708 SQELSDAS--------RKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ-----EIENVKSELKELEARIEELEEDL 774
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 665404360 713 AQLRSS----SIQMLEEKAQEISSLQSEIEDLRQRLGESVE 749
Cdd:TIGR02169 775 HKLEEAlndlEARLSHSRIPEIQAELSKLEEEVSRIEARLR 815
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
340-572 |
5.52e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 5.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 340 VALLAVEVDERHASLEDNSKKQVQQLEQRHASMVREITlRMTNDRDhwtsmtgKLEAQLKSLEQEEIRLRTELELVRTEN 419
Cdd:COG4942 7 LALLLALAAAAQADAAAEAEAELEQLQQEIAELEKELA-ALKKEEK-------ALLKQLAALERRIAALARRIRALEQEL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 420 TELESEQQKAHIQITELLEQNIKLNQELAQTSSSIGGTPEHSPLRPRRHSEDKEE--EMLQLM--------EKLAALQME 489
Cdd:COG4942 79 AALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDavRRLQYLkylaparrEQAEELRAD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 490 NAQLRDKTDELTIEIESLNVELIRSKTKAKKQEKQEKQEDQESAATATKRRGDSPSKTHLTEESPRLGKQRKCTEGEQSD 569
Cdd:COG4942 159 LAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
...
gi 665404360 570 ASN 572
Cdd:COG4942 239 AAE 241
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
591-729 |
7.63e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.76 E-value: 7.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 591 EELTSLRQrvaELEEELKaakegrsltpeSRSKELETSLEQMQRAYEDCEDYWQTkLSEERQLFEKERQIYEDEQHESDK 670
Cdd:PRK12704 64 EEIHKLRN---EFEKELR-----------ERRNELQKLEKRLLQKEENLDRKLEL-LEKREEELEKKEKELEQKQQELEK 128
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 671 KFTELMEKVREYEEQFSKDGRLSPIDERDM-LEQQYSELEAEAAQLrsssIQMLEEKAQE 729
Cdd:PRK12704 129 KEEELEELIEEQLQELERISGLTAEEAKEIlLEKVEEEARHEAAVL----IKEIEEEAKE 184
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
259-439 |
7.87e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.04 E-value: 7.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 259 NTRNLLHVLGFDEEEEVNLQQLTKA---LEEELRGIDGDHEQSNMLRALAALQATELGNYRLAYRQQHEENLKLRADNKA 335
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLEEAeeeLAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404360 336 ANQRVALLAVEVDERHASLEDNSKkQVQQLEQRHASMVREITlRMTNDRDHWT--------------SMTGKLEAQLKSL 401
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQIEELSE-DIESLAAEIEELEELIE-ELESELEALLnerasleealallrSELEELSEELREL 906
|
170 180 190
....*....|....*....|....*....|....*...
gi 665404360 402 EQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQ 439
Cdd:TIGR02168 907 ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
|
|
| |
