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Conserved domains on  [gi|16765478|ref|NP_461093|]
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putative outer membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]

Protein Classification

fimbrial-like adhesin protein( domain architecture ID 10015025)

fimbrial-like adhesin protein similar to Escherichia coli fimbrial-like protein YehA, which is part of the yehABCD fimbrial operon and may contribute to adhesion to various surfaces in specific environmental niches

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PRK15252 PRK15252
putative fimbrial-like adhesin protein;
1-335 0e+00

putative fimbrial-like adhesin protein;


:

Pssm-ID: 237932  Cd Length: 344  Bit Score: 569.98  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16765478    1 MKLFLFIVMLLILPETYAACTGEITYQDNLIIREDFTINPNQSATYSHNFNDTTCSGTYKITRMDPSDIIVGLYNDTVKL 80
Cdd:PRK15252   3 IRIMLFIVMMMVMPVSYAACYSELSVQHNLVVQGDFALNQTQSATYEHNFNDSSCVSTNTITPMSPSDIIVGLYNDTIKL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16765478   81 KLKIAWADNNTLTMP-----FTTGYTVTVEPASSGANVNISAGSGNSVLINGVVSITSASSATQFTAGLRFLGCLLAGRG 155
Cdd:PRK15252  83 NLHFEWTNKNNITLSnnqtsFTSGYSVTVTPAASNAKVNVSAGSGGSVMINGVATLSSASSSTRGSAAVQFLLCLLGGKS 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16765478  156 WNACAADY-NSYLRGAGLYSFDLFVSYDRKQTTCKPEDLTITLPNIALSELYNTGKVSNKNAAD-NIRLQCDNLFGNAKQ 233
Cdd:PRK15252 163 WDACVNSYrNALAQNAGVYSFNLTLSYNPITTTCKPDDLLITLPSIPVSQLPATGNKTTINSKDgDIILRCKNLLGQQNQ 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16765478  234 TSRKMTVYLSSSDLIPDSYSVLRGAVNNGVGFILESGGKTVNISNTAEQGNASTLWKVDQVGTPLNSDMITIPIIASYYV 313
Cdd:PRK15252 243 TSRKMQVYLSSSDLLTNSNTILKGAENNGVGFILESNGKPVTLLNITNSSKGYTNLKEIAAKSKLTDTTVSIPITASYYV 322

                        330       340
                 ....*....|....*....|..
gi 16765478  314 YDRDNIKPGDLKATALIYVKYD 335
Cdd:PRK15252 323 YDTNKVKSGALEATALINVKYD 344
 
Name Accession Description Interval E-value
PRK15252 PRK15252
putative fimbrial-like adhesin protein;
1-335 0e+00

putative fimbrial-like adhesin protein;


Pssm-ID: 237932  Cd Length: 344  Bit Score: 569.98  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16765478    1 MKLFLFIVMLLILPETYAACTGEITYQDNLIIREDFTINPNQSATYSHNFNDTTCSGTYKITRMDPSDIIVGLYNDTVKL 80
Cdd:PRK15252   3 IRIMLFIVMMMVMPVSYAACYSELSVQHNLVVQGDFALNQTQSATYEHNFNDSSCVSTNTITPMSPSDIIVGLYNDTIKL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16765478   81 KLKIAWADNNTLTMP-----FTTGYTVTVEPASSGANVNISAGSGNSVLINGVVSITSASSATQFTAGLRFLGCLLAGRG 155
Cdd:PRK15252  83 NLHFEWTNKNNITLSnnqtsFTSGYSVTVTPAASNAKVNVSAGSGGSVMINGVATLSSASSSTRGSAAVQFLLCLLGGKS 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16765478  156 WNACAADY-NSYLRGAGLYSFDLFVSYDRKQTTCKPEDLTITLPNIALSELYNTGKVSNKNAAD-NIRLQCDNLFGNAKQ 233
Cdd:PRK15252 163 WDACVNSYrNALAQNAGVYSFNLTLSYNPITTTCKPDDLLITLPSIPVSQLPATGNKTTINSKDgDIILRCKNLLGQQNQ 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16765478  234 TSRKMTVYLSSSDLIPDSYSVLRGAVNNGVGFILESGGKTVNISNTAEQGNASTLWKVDQVGTPLNSDMITIPIIASYYV 313
Cdd:PRK15252 243 TSRKMQVYLSSSDLLTNSNTILKGAENNGVGFILESNGKPVTLLNITNSSKGYTNLKEIAAKSKLTDTTVSIPITASYYV 322

                        330       340
                 ....*....|....*....|..
gi 16765478  314 YDRDNIKPGDLKATALIYVKYD 335
Cdd:PRK15252 323 YDTNKVKSGALEATALINVKYD 344
Fimbrial pfam00419
Fimbrial protein;
183-335 5.91e-16

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 74.01  E-value: 5.91e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16765478   183 RKQTTCKPED---LTITLPNIALSELYNTGkVSNKNAADNIRLQCDNLFgnakqTSRKMTVYLSSSDLIPDSYSVLRGAV 259
Cdd:pfam00419   9 RVPATCKITAgtpIEVDFGQIPVNELNAGG-EGSRQKPFSITLECSSGS-----SAVKVTVGLFGTADASSPNLLLTGNG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16765478   260 ---NNGVGFILE-SGGKTVNISNtaeqGNASTLWKVDQVGTPlnsdmiTIPIIASYYVYDRDNIKPGDLKATALIYVKYD 335
Cdd:pfam00419  83 agaATGVGIRLYdANGGALPPNN----GTSSIPVSATAAVAT------GITFTASLVATTGGTPTAGDFNATATIVVDYQ 152
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
191-335 4.81e-05

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 43.10  E-value: 4.81e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16765478 191 EDLTITLPNIALSELYNTGKVSNKNAAdNIRLQ-CDNlfgnakQTSRKMTVYLSSS--DLIPDSYSVLRGAVNNGVGF-I 266
Cdd:COG3539  44 KDQTVDLGTVSTSDLNGVGSTSGPKPF-SIKLTnCDA------GTSNSVKVTFTGTadSANPGLLANTGSGGASGVGIqL 116

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16765478 267 LESGGKTVNIsntaeqGNASTLWKVDQVGTplnsdmITIPIIASYYVYDrDNIKPGDLKATALIYVKYD 335
Cdd:COG3539 117 LDSDGTPIPL------GTPSSAVTLTSNGS------ATLPFYARYVATG-ATVTAGSFNATATFTIDYQ 172
 
Name Accession Description Interval E-value
PRK15252 PRK15252
putative fimbrial-like adhesin protein;
1-335 0e+00

putative fimbrial-like adhesin protein;


Pssm-ID: 237932  Cd Length: 344  Bit Score: 569.98  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16765478    1 MKLFLFIVMLLILPETYAACTGEITYQDNLIIREDFTINPNQSATYSHNFNDTTCSGTYKITRMDPSDIIVGLYNDTVKL 80
Cdd:PRK15252   3 IRIMLFIVMMMVMPVSYAACYSELSVQHNLVVQGDFALNQTQSATYEHNFNDSSCVSTNTITPMSPSDIIVGLYNDTIKL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16765478   81 KLKIAWADNNTLTMP-----FTTGYTVTVEPASSGANVNISAGSGNSVLINGVVSITSASSATQFTAGLRFLGCLLAGRG 155
Cdd:PRK15252  83 NLHFEWTNKNNITLSnnqtsFTSGYSVTVTPAASNAKVNVSAGSGGSVMINGVATLSSASSSTRGSAAVQFLLCLLGGKS 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16765478  156 WNACAADY-NSYLRGAGLYSFDLFVSYDRKQTTCKPEDLTITLPNIALSELYNTGKVSNKNAAD-NIRLQCDNLFGNAKQ 233
Cdd:PRK15252 163 WDACVNSYrNALAQNAGVYSFNLTLSYNPITTTCKPDDLLITLPSIPVSQLPATGNKTTINSKDgDIILRCKNLLGQQNQ 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16765478  234 TSRKMTVYLSSSDLIPDSYSVLRGAVNNGVGFILESGGKTVNISNTAEQGNASTLWKVDQVGTPLNSDMITIPIIASYYV 313
Cdd:PRK15252 243 TSRKMQVYLSSSDLLTNSNTILKGAENNGVGFILESNGKPVTLLNITNSSKGYTNLKEIAAKSKLTDTTVSIPITASYYV 322

                        330       340
                 ....*....|....*....|..
gi 16765478  314 YDRDNIKPGDLKATALIYVKYD 335
Cdd:PRK15252 323 YDTNKVKSGALEATALINVKYD 344
PRK15216 PRK15216
putative fimbrial biosynthesis regulatory protein; Provisional
 1-335 1.12e-53

putative fimbrial biosynthesis regulatory protein; Provisional


Pssm-ID: 185138  Cd Length: 340  Bit Score: 179.48  E-value: 1.12e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16765478    1 MKLFLFIVMLLILPET-YAACTGEITYQDNLIIRED-FTINPNQSATYSHNFNDTTCSGTYKITRMDPSDIIVGL-YNDT 77
Cdd:PRK15216   1 MKRLLFLLMMMQFTQLgYAACNATLTNTKDYTIQSDsLMLGGEESAIITNGFTDANCSNSDVVTKLETSDHIIGMgPNDS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16765478   78 VKLKLKIAWADNNTLTMPFTTG-----YTVTVEPASSGANVNISAGSGNSVLINGVVSITSASSATQFTAGLRFLGCLLA 152
Cdd:PRK15216  81 VKLKLKVEWQSSSAINMRNQNGvieapYKITISEINSLEAVTVSARGGYSVTIDNITVMSGAKNQWSSSDWVVFILRYIG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16765478  153 GRGWNACAADYNSYLRGAGLYSFDLFVSYDRKQTTCKPEDLTITLPNIALSELYNTGKVSNKNAADNIRLQCDNLFGNAK 232
Cdd:PRK15216 161 CWGNRECVANVITDLNGKGVYKANLTINYNRKETTCAPQNLTITLDPVPMTKLRAKGEVSEFSKQGDIILDCKNQVRNAM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16765478  233 QTSRKMTVYLSSSDLIPDSYSVLRGAVNNGVGFILESGGKTVNISNTAEQGNasTLWKVDQVGTPLNSdMITIPIIASYY 312
Cdd:PRK15216 241 LTSRQIAVNLRSDLVWDENEAVLKPDNDNGVGFILRDSNRSLLKINKGVAIN--SIFKTYAKGSAVNS-VEAIPVFATYY 317

                        330       340
                 ....*....|....*....|...
gi 16765478  313 VYDRDNIKPGDLKATALIYVKYD 335
Cdd:PRK15216 318 VLDPAKVKAGPLQSKALIVVSYN 340
Fimbrial pfam00419
Fimbrial protein;
183-335 5.91e-16

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 74.01  E-value: 5.91e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16765478   183 RKQTTCKPED---LTITLPNIALSELYNTGkVSNKNAADNIRLQCDNLFgnakqTSRKMTVYLSSSDLIPDSYSVLRGAV 259
Cdd:pfam00419   9 RVPATCKITAgtpIEVDFGQIPVNELNAGG-EGSRQKPFSITLECSSGS-----SAVKVTVGLFGTADASSPNLLLTGNG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16765478   260 ---NNGVGFILE-SGGKTVNISNtaeqGNASTLWKVDQVGTPlnsdmiTIPIIASYYVYDRDNIKPGDLKATALIYVKYD 335
Cdd:pfam00419  83 agaATGVGIRLYdANGGALPPNN----GTSSIPVSATAAVAT------GITFTASLVATTGGTPTAGDFNATATIVVDYQ 152
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
191-335 4.81e-05

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 43.10  E-value: 4.81e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16765478 191 EDLTITLPNIALSELYNTGKVSNKNAAdNIRLQ-CDNlfgnakQTSRKMTVYLSSS--DLIPDSYSVLRGAVNNGVGF-I 266
Cdd:COG3539  44 KDQTVDLGTVSTSDLNGVGSTSGPKPF-SIKLTnCDA------GTSNSVKVTFTGTadSANPGLLANTGSGGASGVGIqL 116

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16765478 267 LESGGKTVNIsntaeqGNASTLWKVDQVGTplnsdmITIPIIASYYVYDrDNIKPGDLKATALIYVKYD 335
Cdd:COG3539 117 LDSDGTPIPL------GTPSSAVTLTSNGS------ATLPFYARYVATG-ATVTAGSFNATATFTIDYQ 172
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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