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Conserved domains on  [gi|16758882|ref|NP_446434|]
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small ribosomal subunit protein uS8 [Rattus norvegicus]

Protein Classification

uS8 family ribosomal protein( domain architecture ID 10015251)

uS8 family ribosomal protein is a component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell, such as mammalian 40S ribosomal protein S15a and fungal 40S ribosomal protein S22

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00158 PTZ00158
40S ribosomal protein S15A; Provisional
 1-130 5.98e-94

40S ribosomal protein S15A; Provisional


:

Pssm-ID: 185487  Cd Length: 130  Bit Score: 266.58  E-value: 5.98e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758882    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFD 80
Cdd:PTZ00158   1 MVRMSVLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRSGKIVVNLNGRLNKCGVISPRFD 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 16758882   81 VQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
Cdd:PTZ00158  81 VTLGEFEKWANNILPSRQFGHVVLTTSYGIMDHEEARRRHTGGKILGFFY 130
 
Name Accession Description Interval E-value
PTZ00158 PTZ00158
40S ribosomal protein S15A; Provisional
 1-130 5.98e-94

40S ribosomal protein S15A; Provisional


Pssm-ID: 185487  Cd Length: 130  Bit Score: 266.58  E-value: 5.98e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758882    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFD 80
Cdd:PTZ00158   1 MVRMSVLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRSGKIVVNLNGRLNKCGVISPRFD 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 16758882   81 VQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
Cdd:PTZ00158  81 VTLGEFEKWANNILPSRQFGHVVLTTSYGIMDHEEARRRHTGGKILGFFY 130
RpsH COG0096
Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S8 ...
 1-128 5.97e-36

Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S8 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439866  Cd Length: 132  Bit Score: 119.76  E-value: 5.97e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758882   1 MVRMNVLADALKSINNAEKRGKRQVLIrPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFD 80
Cdd:COG0096   1 MSMTDPIADMLTRIRNAQMAGKKEVDV-PASKLKGAILKVLKEEGYIKDFEVIEDGKKGKLRVELKYGINGEPVIKGIKR 79

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
gi 16758882  81 VQLKDLE---KWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGF 128
Cdd:COG0096  80 VSKPGLRvyvKKEELPRVLNGLGIAIVSTSKGVMTDKEARKKGVGGEVLCY 130
Ribosomal_S8 pfam00410
Ribosomal protein S8;
7-130 1.63e-25

Ribosomal protein S8;


Pssm-ID: 425667  Cd Length: 127  Bit Score: 93.24  E-value: 1.63e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758882     7 LADALKSINNAEKRGKRQVLIrPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLtgRLNK-CGVIS-------P- 77
Cdd:pfam00410   3 IADMLTRIRNANMAGHEEVDI-PASKLKGAILKILKEEGYIKDFEVEEDEDKKGIRITL--KYNKgEPVIKglkriskPg 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 16758882    78 -RFDVQLKDLEKWQNNLlpsrqfGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
Cdd:pfam00410  80 lRVYVGKDELPRVLNGL------GIAILSTSKGVMTDKEARKKGVGGEVLCYVW 127
 
Name Accession Description Interval E-value
PTZ00158 PTZ00158
40S ribosomal protein S15A; Provisional
 1-130 5.98e-94

40S ribosomal protein S15A; Provisional


Pssm-ID: 185487  Cd Length: 130  Bit Score: 266.58  E-value: 5.98e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758882    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFD 80
Cdd:PTZ00158   1 MVRMSVLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRSGKIVVNLNGRLNKCGVISPRFD 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 16758882   81 VQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
Cdd:PTZ00158  81 VTLGEFEKWANNILPSRQFGHVVLTTSYGIMDHEEARRRHTGGKILGFFY 130
PLN00146 PLN00146
40S ribosomal protein S15a; Provisional
 1-130 2.87e-84

40S ribosomal protein S15a; Provisional


Pssm-ID: 215075  Cd Length: 130  Bit Score: 242.21  E-value: 2.87e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758882    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFD 80
Cdd:PLN00146   1 MVRRSVLNDALKTMYNAEKRGKRQVLIRPSSKVVIKFLKVMQKHGYIGEFEVVDDHRSGKIVVELNGRLNKCGVISPRFD 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 16758882   81 VQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
Cdd:PLN00146  81 VKVKEIEAWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
rps8p PRK04034
30S ribosomal protein S8P; Reviewed
 1-128 9.54e-64

30S ribosomal protein S8P; Reviewed


Pssm-ID: 179721  Cd Length: 130  Bit Score: 190.05  E-value: 9.54e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758882    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFD 80
Cdd:PRK04034   1 MVLLDPLANALSTIKNAEMVGKKEVIIKPASKLIGNVLRVMQDEGYIGEFEYIDDGRAGKFKVELLGRINKCGAIKPRYP 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 16758882   81 VQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGF 128
Cdd:PRK04034  81 VKYDEFEKWEKRYLPARDFGILIVSTSKGVMSHKEAREKGIGGVLLAY 128
RpsH COG0096
Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S8 ...
 1-128 5.97e-36

Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S8 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439866  Cd Length: 132  Bit Score: 119.76  E-value: 5.97e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758882   1 MVRMNVLADALKSINNAEKRGKRQVLIrPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFD 80
Cdd:COG0096   1 MSMTDPIADMLTRIRNAQMAGKKEVDV-PASKLKGAILKVLKEEGYIKDFEVIEDGKKGKLRVELKYGINGEPVIKGIKR 79

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
gi 16758882  81 VQLKDLE---KWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGF 128
Cdd:COG0096  80 VSKPGLRvyvKKEELPRVLNGLGIAIVSTSKGVMTDKEARKKGVGGEVLCY 130
Ribosomal_S8 pfam00410
Ribosomal protein S8;
7-130 1.63e-25

Ribosomal protein S8;


Pssm-ID: 425667  Cd Length: 127  Bit Score: 93.24  E-value: 1.63e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758882     7 LADALKSINNAEKRGKRQVLIrPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLtgRLNK-CGVIS-------P- 77
Cdd:pfam00410   3 IADMLTRIRNANMAGHEEVDI-PASKLKGAILKILKEEGYIKDFEVEEDEDKKGIRITL--KYNKgEPVIKglkriskPg 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 16758882    78 -RFDVQLKDLEKWQNNLlpsrqfGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
Cdd:pfam00410  80 lRVYVGKDELPRVLNGL------GIAILSTSKGVMTDKEARKKGVGGEVLCYVW 127
rpsH PRK00136
30S ribosomal protein S8; Validated
 7-126 2.74e-15

30S ribosomal protein S8; Validated


Pssm-ID: 234658  Cd Length: 130  Bit Score: 67.00  E-value: 2.74e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758882    7 LADALKSINNAEKRGKRQVLIrPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNL---------TG--RLNKCGVi 75
Cdd:PRK00136   6 IADMLTRIRNAQMAKHETVSM-PASKLKVAIAEILKEEGYIKDYEVEEDGKQGILRITLkygegepviEGikRVSKPGL- 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 16758882   76 spRFDVQLKDLEKWQNNLlpsrqfGFIVLTTSAGIMDHEEARRKHTGGKIL 126
Cdd:PRK00136  84 --RVYKKKDELPKVLNGL------GIAIVSTSKGVMTDREARKAGVGGEVL 126
rps8 CHL00042
ribosomal protein S8
 1-126 1.20e-08

ribosomal protein S8


Pssm-ID: 214344  Cd Length: 132  Bit Score: 49.78  E-value: 1.20e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16758882    1 MVRmNVLADALKSINNAEKRGKRQVLIrPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGV------ 74
Cdd:CHL00042   1 MGN-DTIADMLTRIRNANMVKKGTVRI-PATNITENIVKILLREGFIENVREHRENNKYFLVLTLKYRGNKKKPyittlk 78

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 16758882   75 -IS-P--RFDVQLKDLEKWQNNLlpsrqfGFIVLTTSAGIMDHEEARRKHTGGKIL 126
Cdd:CHL00042  79 rISkPglRIYSNYKEIPRVLGGM------GIVILSTSKGIMTDREARLKGIGGEIL 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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