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Conserved domains on  [gi|1995160283|ref|NP_446235|]
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interferon gamma receptor 1 precursor [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
IFNGR1 pfam07140
Interferon gamma receptor (IFNGR1); This family consists of several eukaryotic and viral ...
 164-319 1.53e-53

Interferon gamma receptor (IFNGR1); This family consists of several eukaryotic and viral interferon gamma receptor proteins. Molecular interactions among cytokines and cytokine receptors in eukaryotes form the basis of many cell-signaling pathways relevant to immune function. Human interferon-gamma (IFN-gamma) signals through a multimeric receptor complex consisting of two different but structurally related transmembrane chains: the high-affinity receptor-binding subunit (IFN-gammaRalpha) and a species specific accessory factor (AF-1 or IFN-gammaRbeta). The vaccinia viral interferon gamma receptor has been shown to be secreted from infected cells during early infection. The structure has been halved such that the N-terminus of this family is now represented by Tissue_fac pfam01108.


:

Pssm-ID: 284538  Cd Length: 133  Bit Score: 176.13  E-value: 1.53e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995160283 164 FGDGNTC-YTFDYTVFVKHYRSGEILhtEHSVLKEDCSETLCELNISVStlnSNYCVSVVGKSSFWQVNTETSKDACIPF 242
Cdd:pfam07140   1 YGNGTTCdYTFGYTVYFLFNDSKEIL--EYSVDDRYCDEVQCRFNIESQ---ENVCVSVVGVYGNWYVRTEASKDVCVPE 75

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1995160283 243 LhddreesiwmllvapllfltiVVPALVCCYIKK-NPFKRKSIMLPKSLLSVVKNATSETKPESKYSLVTSCQPAVLE 319
Cdd:pfam07140  76 L---------------------VPRPVDPYYIKKrNDLKRVKIRLPNSLESVVKSATSETKPESLYSLITSMFPRLLE 132
Tissue_fac super family cl47630
Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type ...
 9-119 7.34e-20

Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type III domain. The family is found in cytokine receptors, interleukin and interferon receptors and coagulation factor III proteins. It occurs multiple times, as does fn3, family pfam00041.


The actual alignment was detected with superfamily member pfam01108:

Pssm-ID: 460067  Cd Length: 107  Bit Score: 84.36  E-value: 7.34e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995160283   9 RMILLVVLMLSAEIGsgalmsteDPKPPSVPAPTNVLITSYDLNPVVHWKH-QNVSQAAVFTVQVKMYPD-NWTD--ACT 84
Cdd:pfam01108   1 LLTLLLGLLLLALAS--------AAGGPSLPAPQNVTFQSTNFKNILTWEPgPNSPPDVVYTVQYKIYGSgDWKNvpNCT 72

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1995160283  85 NIAHHYCNIYKHISYPDSSAWARVKAKVGQRESAY 119
Cdd:pfam01108  73 NITRTECDLTDETSDLTETYYARVRAVSGGGTSSW 107
 
Name Accession Description Interval E-value
IFNGR1 pfam07140
Interferon gamma receptor (IFNGR1); This family consists of several eukaryotic and viral ...
 164-319 1.53e-53

Interferon gamma receptor (IFNGR1); This family consists of several eukaryotic and viral interferon gamma receptor proteins. Molecular interactions among cytokines and cytokine receptors in eukaryotes form the basis of many cell-signaling pathways relevant to immune function. Human interferon-gamma (IFN-gamma) signals through a multimeric receptor complex consisting of two different but structurally related transmembrane chains: the high-affinity receptor-binding subunit (IFN-gammaRalpha) and a species specific accessory factor (AF-1 or IFN-gammaRbeta). The vaccinia viral interferon gamma receptor has been shown to be secreted from infected cells during early infection. The structure has been halved such that the N-terminus of this family is now represented by Tissue_fac pfam01108.


Pssm-ID: 284538  Cd Length: 133  Bit Score: 176.13  E-value: 1.53e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995160283 164 FGDGNTC-YTFDYTVFVKHYRSGEILhtEHSVLKEDCSETLCELNISVStlnSNYCVSVVGKSSFWQVNTETSKDACIPF 242
Cdd:pfam07140   1 YGNGTTCdYTFGYTVYFLFNDSKEIL--EYSVDDRYCDEVQCRFNIESQ---ENVCVSVVGVYGNWYVRTEASKDVCVPE 75

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1995160283 243 LhddreesiwmllvapllfltiVVPALVCCYIKK-NPFKRKSIMLPKSLLSVVKNATSETKPESKYSLVTSCQPAVLE 319
Cdd:pfam07140  76 L---------------------VPRPVDPYYIKKrNDLKRVKIRLPNSLESVVKSATSETKPESLYSLITSMFPRLLE 132
Tissue_fac pfam01108
Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type ...
 9-119 7.34e-20

Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type III domain. The family is found in cytokine receptors, interleukin and interferon receptors and coagulation factor III proteins. It occurs multiple times, as does fn3, family pfam00041.


Pssm-ID: 460067  Cd Length: 107  Bit Score: 84.36  E-value: 7.34e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995160283   9 RMILLVVLMLSAEIGsgalmsteDPKPPSVPAPTNVLITSYDLNPVVHWKH-QNVSQAAVFTVQVKMYPD-NWTD--ACT 84
Cdd:pfam01108   1 LLTLLLGLLLLALAS--------AAGGPSLPAPQNVTFQSTNFKNILTWEPgPNSPPDVVYTVQYKIYGSgDWKNvpNCT 72

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1995160283  85 NIAHHYCNIYKHISYPDSSAWARVKAKVGQRESAY 119
Cdd:pfam01108  73 NITRTECDLTDETSDLTETYYARVRAVSGGGTSSW 107
 
Name Accession Description Interval E-value
IFNGR1 pfam07140
Interferon gamma receptor (IFNGR1); This family consists of several eukaryotic and viral ...
 164-319 1.53e-53

Interferon gamma receptor (IFNGR1); This family consists of several eukaryotic and viral interferon gamma receptor proteins. Molecular interactions among cytokines and cytokine receptors in eukaryotes form the basis of many cell-signaling pathways relevant to immune function. Human interferon-gamma (IFN-gamma) signals through a multimeric receptor complex consisting of two different but structurally related transmembrane chains: the high-affinity receptor-binding subunit (IFN-gammaRalpha) and a species specific accessory factor (AF-1 or IFN-gammaRbeta). The vaccinia viral interferon gamma receptor has been shown to be secreted from infected cells during early infection. The structure has been halved such that the N-terminus of this family is now represented by Tissue_fac pfam01108.


Pssm-ID: 284538  Cd Length: 133  Bit Score: 176.13  E-value: 1.53e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995160283 164 FGDGNTC-YTFDYTVFVKHYRSGEILhtEHSVLKEDCSETLCELNISVStlnSNYCVSVVGKSSFWQVNTETSKDACIPF 242
Cdd:pfam07140   1 YGNGTTCdYTFGYTVYFLFNDSKEIL--EYSVDDRYCDEVQCRFNIESQ---ENVCVSVVGVYGNWYVRTEASKDVCVPE 75

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1995160283 243 LhddreesiwmllvapllfltiVVPALVCCYIKK-NPFKRKSIMLPKSLLSVVKNATSETKPESKYSLVTSCQPAVLE 319
Cdd:pfam07140  76 L---------------------VPRPVDPYYIKKrNDLKRVKIRLPNSLESVVKSATSETKPESLYSLITSMFPRLLE 132
Tissue_fac pfam01108
Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type ...
 9-119 7.34e-20

Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type III domain. The family is found in cytokine receptors, interleukin and interferon receptors and coagulation factor III proteins. It occurs multiple times, as does fn3, family pfam00041.


Pssm-ID: 460067  Cd Length: 107  Bit Score: 84.36  E-value: 7.34e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995160283   9 RMILLVVLMLSAEIGsgalmsteDPKPPSVPAPTNVLITSYDLNPVVHWKH-QNVSQAAVFTVQVKMYPD-NWTD--ACT 84
Cdd:pfam01108   1 LLTLLLGLLLLALAS--------AAGGPSLPAPQNVTFQSTNFKNILTWEPgPNSPPDVVYTVQYKIYGSgDWKNvpNCT 72

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1995160283  85 NIAHHYCNIYKHISYPDSSAWARVKAKVGQRESAY 119
Cdd:pfam01108  73 NITRTECDLTDETSDLTETYYARVRAVSGGGTSSW 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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