|
Name |
Accession |
Description |
Interval |
E-value |
| Rad51C |
cd19492 |
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
109-321 |
1.44e-106 |
|
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51C, together with the other RAD51 paralogs, RAD51B, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site. Additionally, RAD51C acts as a mediator in the early steps of DNA damage signaling.
Pssm-ID: 410900 [Multi-domain] Cd Length: 172 Bit Score: 309.93 E-value: 1.44e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 109 MKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFmvdrvvslataciqhlhliagthteeehqkalk 188
Cdd:cd19492 1 GKITEICGVPGVGKTQLCMQLAVNVQIPKCFGGLAGEAIYIDTEGSF--------------------------------- 47
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 189 dftlenilsHIYYFRCHDYTELLAQVYLLPDFLSDHPKVQLVIIDGIAFPFRHDLEDLSLRTRLLNGLAQQMISLANNHR 268
Cdd:cd19492 48 ---------NIHYFRVHDYVELLALINSLPKFLEDHPKVKLIVVDSIAFPFRHDFDDLAQRTRLLNGLAQLLHSLARQHN 118
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 16716605 269 LAVILTNQMTTKIDKN-QALLVPALGESWGHAATIRLIFHWEQKQRFATLYKSP 321
Cdd:cd19492 119 LAVVLTNQVTTKISEDgQSQLVPALGESWSHACTTRLFLTWDEKQRFAHLYKSP 172
|
|
| radA |
PRK04301 |
DNA repair and recombination protein RadA; Validated |
12-340 |
1.22e-48 |
|
DNA repair and recombination protein RadA; Validated
Pssm-ID: 235273 [Multi-domain] Cd Length: 317 Bit Score: 166.59 E-value: 1.22e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 12 PAVRGKLVAAGFQTAEDVLEVKPSELSKEVGISKEEALETLQILRRECltnkprcagtSVANEKcTALELLEQEHTQGFI 91
Cdd:PRK04301 16 PATAEKLREAGYDTVEAIAVASPKELSEAAGIGESTAAKIIEAAREAA----------DIGGFE-TALEVLERRKNVGKI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 92 ITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVSLATAciqhl 171
Cdd:PRK04301 85 TTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEA----- 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 172 hliagthteeehqkalKDFTLENILSHIYYFRCH--DYTELLAQVylLPDFLSDHPKVQLVIIDGIAFPFRHD---LEDL 246
Cdd:PRK04301 160 ----------------LGLDPDEVLDNIHVARAYnsDHQMLLAEK--AEELIKEGENIKLVIVDSLTAHFRAEyvgRGNL 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 247 SLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDknqAL----LVPALGESWGHAATIRLifhWEQK----QRFATLY 318
Cdd:PRK04301 222 AERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPD---AFfgdpTQPIGGHILGHTATFRI---YLRKskgnKRIARLV 295
|
330 340
....*....|....*....|..
gi 16716605 319 KSPSQKESTIPFQITPQGFRDA 340
Cdd:PRK04301 296 DSPHLPEGEAVFRITEEGIRDA 317
|
|
| recomb_radA |
TIGR02236 |
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA ... |
12-339 |
4.27e-48 |
|
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 131290 [Multi-domain] Cd Length: 310 Bit Score: 164.92 E-value: 4.27e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 12 PAVRGKLVAAGFQTAEDVLEVKPSELSKEVGISKEEALETLQILRRECltnkprcagtSVANEKcTALELLEQEHTQGFI 91
Cdd:TIGR02236 9 PATAEKLREAGYDTFEAIAVASPKELSEIAGISEGTAAKIIQAARKAA----------DLGGFE-TADDVLERRKTIGKI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 92 ITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVSLATAciqhl 171
Cdd:TIGR02236 78 TTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEA----- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 172 hliAGTHTEEehqkalkdftlenILSHIYYFRCHDYTELLAQVYLLPDFLSDHPK-VQLVIIDGIAFPFRHDL---EDLS 247
Cdd:TIGR02236 153 ---RGLDPDE-------------VLKNIYVARAYNSNHQMLLVEKAEDLIKELNNpVKLLIVDSLTSHFRAEYvgrGALA 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 248 LRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDknqAL----LVPALGESWGHAATIRLifhWEQK----QRFATLYK 319
Cdd:TIGR02236 217 ERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPD---AFfgdpTRPIGGHILGHAATFRV---YLRKgkgdKRIARLVD 290
|
330 340
....*....|....*....|
gi 16716605 320 SPSQKESTIPFQITPQGFRD 339
Cdd:TIGR02236 291 SPHLPEGEAVFRITEKGIED 310
|
|
| RecA-like |
cd01393 |
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
110-308 |
1.48e-47 |
|
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs RadA and RadB.
Pssm-ID: 410881 [Multi-domain] Cd Length: 185 Bit Score: 159.44 E-value: 1.48e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 110 KTTEVCGVPGVGKTQLCMQLAVDVQIPEcfggvaGEAVFIDTEGSFMVDRVVSLATACIQhlhliagthteeehqkalKD 189
Cdd:cd01393 2 KITEIYGPPGSGKTQLALQLAANALLLG------GGVVWIDTEGAFPPSRLVQILEASPS------------------SE 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 190 FTLENILSHIYYFRCHDYTELLAQVYLLPDFLSDHPKVQLVIIDGIAFPFRHDL-------EDLSLRTRLLNGLAQQMIS 262
Cdd:cd01393 58 LELAEALSRLLYFRPPDTLAHLLALDSLPESLFPPPNTSLVVVDSVSALFRKAFprggdgdSSSSLRARLLSQLARALQK 137
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 16716605 263 LANNHRLAVILTNQMTTKID--KNQALLVPALGESWGHAATIRLIFHW 308
Cdd:cd01393 138 LAAQFNLAVVVTNQVTTKIRggSGASLVPPALGNTWEHSVSTRLLLYR 185
|
|
| XRCC3 |
cd19491 |
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells ... |
98-304 |
6.00e-45 |
|
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells 3) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC3, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410899 [Multi-domain] Cd Length: 250 Bit Score: 154.76 E-value: 6.00e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 98 LDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVSLATACIQHLHLIAGt 177
Cdd:cd19491 1 LDELLGGGIPVGGITEIAGESGAGKTQLCLQLALTVQLPRELGGLGGGAVYICTESSFPSKRLQQLASSLPKRYHLEKA- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 178 hteeehqkalkdftlENILSHIYYFRCHDYTELLAQV-YLLPDFLSDHPkVQLVIIDGIAFPFRHDLE----DLSLRTRL 252
Cdd:cd19491 80 ---------------KNFLDNIFVEHVADLETLEHCLnYQLPALLERGP-IRLVVIDSIAALFRSEFDtsrsDLVERAKY 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16716605 253 LNGLAQQMISLANNHRLAVILTNQMTTKIDKN-----------------------QALLVPALGESWGHAATIRL 304
Cdd:cd19491 144 LRRLADHLKRLADKYNLAVVVVNQVTDRFDSSsdasglgvldylsqfssfsggvsGNRKVPALGLTWANLVNTRL 218
|
|
| Rad51 |
pfam08423 |
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ... |
77-340 |
2.49e-43 |
|
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein.
Pssm-ID: 462471 [Multi-domain] Cd Length: 255 Bit Score: 150.92 E-value: 2.49e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 77 TALELLEQEHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFM 156
Cdd:pfam08423 5 TATELHQRRSELIQITTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTEGTFR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 157 VDRVVSLAtaciqhlhliagthteeEHQKALKDFTLENILshiyYFRCHDY---TELLAQvylLPDFLSDHpKVQLVIID 233
Cdd:pfam08423 85 PERLVAIA-----------------ERYGLDPEDVLDNVA----YARAYNSehqMQLLQQ---AAAMMSES-RFALLIVD 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 234 GIAFPFRHD---LEDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDKNQALLV-----PALGESWGHAATIRLI 305
Cdd:pfam08423 140 SATALYRTDfsgRGELAERQQHLAKFLRTLQRLADEFGVAVVITNQVVAQVDGAAGMFSgdpkkPIGGHIMAHASTTRLS 219
|
250 260 270
....*....|....*....|....*....|....*....
gi 16716605 306 FhweQK----QRFATLYKSPSQKESTIPFQITPQGFRDA 340
Cdd:pfam08423 220 L---RKgrgeQRICKIYDSPCLPESEAVFAIGSGGIIDP 255
|
|
| DMC1 |
cd19514 |
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in ... |
91-339 |
6.80e-37 |
|
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in meiosis. It assembles at the sites of programmed DNA double-strand breaks and carries out a search for allelic DNA sequences located on homologous chromatids. It forms octameric rings.
Pssm-ID: 410922 [Multi-domain] Cd Length: 236 Bit Score: 133.25 E-value: 6.80e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 91 IITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVSLAtaciqh 170
Cdd:cd19514 1 ISTGSTELDKLLGGGIESMSITEVFGEFRTGKTQLSHTLCVTAQLPGSMGGGGGKVAYIDTEGTFRPDRIRPIA------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 171 lhliagthteeEHQKALKDFTLENILshiyYFRCHDYTELLAQVYLLPDFLSDHPKVQLVIIDGIAFPFRHDLE---DLS 247
Cdd:cd19514 75 -----------ERFGVDHDAVLDNIL----YARAYTSEHQMELLDYVAAKFHEEAVFRLLIIDSIMALFRVDFSgrgELA 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 248 LRTRLLNGLAQQMISLANNHRLAVILTNQMTTkiDKNQALLV------PALGESWGHAATIRLIFH-WEQKQRFATLYKS 320
Cdd:cd19514 140 ERQQKLAQMLSRLQKISEEYNVAVFITNQVTA--DPGAAMTFqadpkkPIGGHILAHASTTRISLRkGRGEERIAKIYDS 217
|
250
....*....|....*....
gi 16716605 321 PSQKESTIPFQITPQGFRD 339
Cdd:cd19514 218 PDLPENEATFAITAGGIAD 236
|
|
| archRadA |
cd19515 |
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a ... |
91-339 |
9.62e-37 |
|
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a homolog of Rad51. RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR)
Pssm-ID: 410923 [Multi-domain] Cd Length: 233 Bit Score: 132.87 E-value: 9.62e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 91 IITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVSLATAciqh 170
Cdd:cd19515 1 ISTGSKELDKLLGGGIETQAITEVFGEFGSGKTQLCHQLAVNVQLPPEEGGLNGKAVYIDTENTFRPERIMQMAKA---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 171 lhliagthteeehqkalKDFTLENILSHIYYFRCHDYTELLAQVYLLPDFLSDHPKVQLVIIDGIAFPFRHDL---EDLS 247
Cdd:cd19515 77 -----------------LGLDPDEVLDNIYVARAYNSNHQMLLVEKAEDLIKEGNNIKLLIVDSLTSHFRAEYvgrGTLA 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 248 LRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDKNQAL-LVPALGESWGHAATIRLIFHWEQK-QRFATLYKSPSQKE 325
Cdd:cd19515 140 ERQQKLNKHLHDLHRLADLYNIAVLVTNQVMAKPDAFFGDpTQAIGGHILGHAATFRVYLRKGKGgKRIARLVDSPHLPE 219
|
250
....*....|....
gi 16716605 326 STIPFQITPQGFRD 339
Cdd:cd19515 220 GEAVFRITEKGIED 233
|
|
| Rad51B |
cd19493 |
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
99-322 |
5.12e-36 |
|
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51B, together with the other RAD51 paralogs, RAD51C, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410901 [Multi-domain] Cd Length: 222 Bit Score: 130.52 E-value: 5.12e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 99 DNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFmvdrvvSLATACIQHLHLIAGTH 178
Cdd:cd19493 1 DTALAGGLPLGAITEITGASGSGKTQFALTLASSAAMPARKGGLDGGVLYIDTESKF------SAERLAEIAEARFPEAF 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 179 TEEEHQKALkdftLENILSHIYYFRCHDYTELLAQVYLLPDFLSDHpKVQLVIIDGIAFPFRHD----LEDLSLRTRLLN 254
Cdd:cd19493 75 SGFMEENER----AEEMLKRVAVVRVTTLAQLLERLPNLEEHILSS-GVRLVVIDSIAALVRREfggsDGEVTERHNALA 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16716605 255 GLAQQMISLANNHRLAVILTNQMTTKIDKNQ---ALLVPALGESWGHAATIRLIFHW--EQKQRFATLYKSPS 322
Cdd:cd19493 150 REASSLKRLAEEFRIAVLVTNQATTHFGDAGdgsSGVTAALGDAWAHAVNTRLRLERclLQLRRVLEIVKSPL 222
|
|
| PTZ00035 |
PTZ00035 |
Rad51 protein; Provisional |
17-340 |
3.40e-35 |
|
Rad51 protein; Provisional
Pssm-ID: 185407 [Multi-domain] Cd Length: 337 Bit Score: 131.66 E-value: 3.40e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 17 KLVAAGFQTAEDVLEVKPSELSKEVGISKEEALETLQILRRECltnkprcagtsvANEKCTALELLEQEHTQGFIITFCS 96
Cdd:PTZ00035 38 KLKEAGICTVESVAYATKKDLCNIKGISEAKVEKIKEAASKLV------------PMGFISATEYLEARKNIIRITTGST 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 97 ALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVSLAtaciqhlhliag 176
Cdd:PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIA------------ 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 177 thteeEHQKALKDFTLENILshiyYFRC--HDY-TELLAQVyllPDFLSDHpKVQLVIIDGIAFPFRHDLE---DLSLRT 250
Cdd:PTZ00035 174 -----ERFGLDPEDVLDNIA----YARAynHEHqMQLLSQA---AAKMAEE-RFALLIVDSATALFRVDYSgrgELAERQ 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 251 RLLNGLAQQMISLANNHRLAVILTNQMTTKIDKNQALL----VPALGESWGHAATIRLIFhweQK----QRFATLYKSPS 322
Cdd:PTZ00035 241 QHLGKFLRALQKLADEFNVAVVITNQVMADVDGASMFVadpkKPIGGHIIAHASTTRLSL---RKgrgeQRICKIYDSPN 317
|
330
....*....|....*...
gi 16716605 323 QKESTIPFQITPQGFRDA 340
Cdd:PTZ00035 318 LPESEAVFAISEGGIIDA 335
|
|
| recomb_DMC1 |
TIGR02238 |
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA ... |
77-340 |
2.62e-33 |
|
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Pssm-ID: 131292 [Multi-domain] Cd Length: 313 Bit Score: 126.05 E-value: 2.62e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 77 TALELLEQEHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFM 156
Cdd:TIGR02238 64 TAFEISQKRKKVLKITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFR 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 157 VDRVVSLAtaciqhlhliagthteeEHQKALKDFTLENILshiyYFRCHDYTELLAQVYLLPDFLSDHPkVQLVIIDGIA 236
Cdd:TIGR02238 144 PDRIRAIA-----------------ERFGVDPDAVLDNIL----YARAYTSEHQMELLDYLAAKFSEEP-FRLLIVDSIM 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 237 FPFRHDLE---DLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTkiDKNQALLV------PALGESWGHAATIRLIFH 307
Cdd:TIGR02238 202 ALFRVDFSgrgELSERQQKLAQMLSRLNKISEEFNVAVFVTNQVQA--DPGATMTFiadpkkPIGGHVLAHASTTRILLR 279
|
250 260 270
....*....|....*....|....*....|....
gi 16716605 308 -WEQKQRFATLYKSPSQKESTIPFQITPQGFRDA 340
Cdd:TIGR02238 280 kGRGEERVAKLYDSPDMPEAEASFQITEGGIADA 313
|
|
| PLN03186 |
PLN03186 |
DNA repair protein RAD51 homolog; Provisional |
17-340 |
4.12e-32 |
|
DNA repair protein RAD51 homolog; Provisional
Pssm-ID: 178728 [Multi-domain] Cd Length: 342 Bit Score: 123.30 E-value: 4.12e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 17 KLVAAGFQTAEDVLEVKPSELSKEVGISKEEALETLQIlrrecltnkprcAGTSVANEKCTALELLEQEHTQGFIITFCS 96
Cdd:PLN03186 43 KLKDAGIHTVESLAYAPKKDLLQIKGISEAKVEKILEA------------ASKLVPLGFTTASQLHAQRQEIIQITTGSR 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 97 ALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVSLAtaciqhlhliag 176
Cdd:PLN03186 111 ELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIA------------ 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 177 thteeEHQKALKDFTLENilshIYYFRCHDyTELLAQVYLLPDFLSDHPKVQLVIIDGIAFPFRHDLE---DLSLRTRLL 253
Cdd:PLN03186 179 -----ERFGLNGADVLEN----VAYARAYN-TDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSgrgELSARQMHL 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 254 NGLAQQMISLANNHRLAVILTNQMTTKIDKNQ----ALLVPALGESWGHAATIRLifhWEQKQ----RFATLYKSPSQKE 325
Cdd:PLN03186 249 GKFLRSLQRLADEFGVAVVITNQVVAQVDGSAffagPQLKPIGGNIMAHASTTRL---ALRKGrgenRICKVISSPCLPE 325
|
330
....*....|....*
gi 16716605 326 STIPFQITPQGFRDA 340
Cdd:PLN03186 326 AEARFSISSEGVTDV 340
|
|
| Rad51_DMC1_archRadA |
cd01123 |
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic ... |
91-336 |
2.54e-31 |
|
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal protein RadA. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Pssm-ID: 410868 [Multi-domain] Cd Length: 234 Bit Score: 118.40 E-value: 2.54e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 91 IITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVSLAtaciqh 170
Cdd:cd01123 1 ITTGSKELDKLLGGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAIYIDTEGTFRPERLRAIA------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 171 lhliagthteeehqkalKDFTL--ENILSHIYYFRCHDYTELLAQVYLLPDFLSDHPkVQLVIIDGIAFPFRHDLE---D 245
Cdd:cd01123 75 -----------------QRFGLdpDDVLDNVAYARAFNSDHQTQLLDQAAAMMVESR-FKLLIVDSATALYRTDYSgrgE 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 246 LSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDKNQALLV----PALGESWGHAATIRLIFH-WEQKQRFATLYKS 320
Cdd:cd01123 137 LSARQMHLAKFLRMLQRLADEFGVAVVVTNQVVAQVDGAMMFAAdpkkPIGGNILAHASTTRLYLRkGRGETRICKIYDS 216
|
250
....*....|....*.
gi 16716605 321 PSQKESTIPFQITPQG 336
Cdd:cd01123 217 PCLPEAEAVFAITADG 232
|
|
| PLN03187 |
PLN03187 |
meiotic recombination protein DMC1 homolog; Provisional |
77-340 |
6.15e-31 |
|
meiotic recombination protein DMC1 homolog; Provisional
Pssm-ID: 215620 [Multi-domain] Cd Length: 344 Bit Score: 120.27 E-value: 6.15e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 77 TALELLEQEHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFM 156
Cdd:PLN03187 94 TGSDALLKRKSVVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFR 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 157 VDRVVSLAtaciQHLHLIAGThteeehqkalkdftlenILSHIYYFRCHDYTELLAQVYLLPDFLSDHPkVQLVIIDGIA 236
Cdd:PLN03187 174 PDRIVPIA----ERFGMDADA-----------------VLDNIIYARAYTYEHQYNLLLGLAAKMAEEP-FRLLIVDSVI 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 237 FPFRHDLE---DLSLRTRLLNGLAQQMISLANNHRLAVILTNQ-------MTTKIDKNQallvPALGESWGHAATIRLIF 306
Cdd:PLN03187 232 ALFRVDFTgrgELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQviadpggGMFISDPKK----PAGGHVLAHAATIRLML 307
|
250 260 270
....*....|....*....|....*....|....*
gi 16716605 307 H-WEQKQRFATLYKSPSQKESTIPFQITPQGFRDA 340
Cdd:PLN03187 308 RkGKGEQRVCKVFDAPNLPEAEAEFQITSGGIMDA 342
|
|
| radB |
PRK09361 |
DNA repair and recombination protein RadB; Provisional |
91-339 |
1.13e-30 |
|
DNA repair and recombination protein RadB; Provisional
Pssm-ID: 236482 [Multi-domain] Cd Length: 225 Bit Score: 116.50 E-value: 1.13e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 91 IITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPEcfggvaGEAVFIDTEGsFMVDRVVSLATAciqh 170
Cdd:PRK09361 5 LPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNG------KKVIYIDTEG-LSPERFKQIAGE---- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 171 lhliagthteeehqkalkdfTLENILSHIYYFRCHDYTELLAQVYLLPDFLSDhpKVQLVIIDGIAFPFRHDLEDLSLRT 250
Cdd:PRK09361 74 --------------------DFEELLSNIIIFEPSSFEEQSEAIRKAEKLAKE--NVGLIVLDSATSLYRLELEDEEDNS 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 251 RLLNGLAQQM---ISLANNHRLAVILTNQMTTKIDKNQallVPALGESW-GHA--ATIRLifhwEQ---KQRFATLYKSP 321
Cdd:PRK09361 132 KLNRELGRQLthlLKLARKHDLAVVITNQVYSDIDSDG---LRPLGGHTlEHWskTILRL----EKfrnGKRRATLEKHR 204
|
250
....*....|....*....
gi 16716605 322 SQKE-STIPFQITPQGFRD 339
Cdd:PRK09361 205 SRPEgESAEFRITDRGIEI 223
|
|
| archRadB |
cd01394 |
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional ... |
91-338 |
1.74e-29 |
|
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional homologue to the bacterial RecA. The precise function of RadB is unclear.
Pssm-ID: 410882 [Multi-domain] Cd Length: 216 Bit Score: 113.18 E-value: 1.74e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 91 IITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVqipecfGGVAGEAVFIDTEGsFMVDRVVSlataciqh 170
Cdd:cd01394 1 LSTGSKSLDSLLGGGVERGTITQIYGPPGSGKTNICLQLAVEA------AKQGKKVVYIDTEG-LSPERFQQ-------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 171 lhlIAGTHTEEehqkalkdftlenILSHIYYFRCHDYTELLAQVYLLPDFLSDHpKVQLVIIDGIAFPFRHDLEDLSlrt 250
Cdd:cd01394 66 ---IAGERFES-------------IASNIIVFEPYSFDEQGVAIQEAEKLLKSD-KVDLVVVDSATALYRLELGDDS--- 125
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 251 RLLNGLAQQMI---SLANNHRLAVILTNQMTTKIDKNQALLVPalGESWGHA--ATIRLifhwEQKQ---RFATLYKSPS 322
Cdd:cd01394 126 EANRELSRQMSkllSIARKYDIPVVITNQVYSDIDDDRLKPVG--GTLLEHWskAIIRL----EKSPpglRRATLEKHRS 199
|
250
....*....|....*..
gi 16716605 323 QKE-STIPFQITPQGFR 338
Cdd:cd01394 200 RPEgQSAGFRITDRGIR 216
|
|
| Rad51 |
cd19513 |
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous ... |
91-339 |
3.27e-28 |
|
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51 is recruited to the break site with the help of its paralogs, RAD51D, RAD51B, RAD51C, XRCC3, and XRCC2, where it forms long helical polymers which wrap around the ssDNA tail at the break which leads to pairing and strand invasion.
Pssm-ID: 410921 [Multi-domain] Cd Length: 235 Bit Score: 110.10 E-value: 3.27e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 91 IITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVSLAtaciqh 170
Cdd:cd19513 1 ITTGSKELDKLLGGGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIA------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 171 lhliagthteeehqkalKDFTL--ENILSHIYYFRCHD---YTELLAQVYLLpdfLSDHpKVQLVIIDGIAFPFRHDLE- 244
Cdd:cd19513 75 -----------------ERYGLngEDVLDNVAYARAYNtdhQMQLLIQASAM---MAES-RYALLIVDSATALYRTDYSg 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 245 --DLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDKNQALLVPAL----GESWGHAATIRLIFhweQK----QRF 314
Cdd:cd19513 134 rgELSARQMHLAKFLRMLQRLADEFGVAVVITNQVVAQVDGAAMFAGDPKkpigGNIMAHASTTRLYL---RKgrgeTRI 210
|
250 260
....*....|....*....|....*
gi 16716605 315 ATLYKSPSQKESTIPFQITPQGFRD 339
Cdd:cd19513 211 CKIYDSPCLPEAEAVFAITEDGIGD 235
|
|
| recomb_RAD51 |
TIGR02239 |
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein ... |
5-341 |
3.46e-28 |
|
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Pssm-ID: 274048 [Multi-domain] Cd Length: 316 Bit Score: 112.13 E-value: 3.46e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 5 LVGYPLSPAVRGKLVAAGFQTAEDVLEVKPSELSKEVGISKEEALETLQIlrrecltnkprcAGTSVANEKCTALELLEQ 84
Cdd:TIGR02239 4 LEGNGITAADIKKLQEAGLHTVESVAYAPKKQLLEIKGISEAKADKILAE------------AAKLVPMGFTTATEFHQR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 85 EHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVSLA 164
Cdd:TIGR02239 72 RQEVIQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 165 taciqhlhliagthteeehqkalKDFTL--ENILSHIYYFRCHD---YTELLAQVYLLpdfLSDHpKVQLVIIDGIAFPF 239
Cdd:TIGR02239 152 -----------------------ERYGLnpEDVLDNVAYARAYNtdhQLQLLQQAAAM---MSES-RFALLIVDSATALY 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 240 RHDLE---DLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDKNQALLV-----PALGESWGHAATIRLIFH-WEQ 310
Cdd:TIGR02239 205 RTDFSgrgELSARQMHLARFLRSLQRLADEFGVAVVITNQVVAQVDGAGSMFAgdpkkPIGGNIMAHASTTRLSLRkGRG 284
|
330 340 350
....*....|....*....|....*....|.
gi 16716605 311 KQRFATLYKSPSQKESTIPFQITPQGFRDAV 341
Cdd:TIGR02239 285 EQRICKIYDSPCLPESEAMFAIYEDGIGDPK 315
|
|
| XRCC2 |
cd19490 |
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells ... |
113-307 |
5.79e-28 |
|
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells 2) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC2, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC3, helps recruit RAD51 to the break site.
Pssm-ID: 410898 [Multi-domain] Cd Length: 226 Bit Score: 109.36 E-value: 5.79e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 113 EVCGVPGVGKTQLCMQLAVDVQIPECFGGVA-----GEAVFIDTEGSFMVDRVVSLATACIQHLHLIAGTHTEEEHQkal 187
Cdd:cd19490 5 EITGPSGSGKTELLYHLAARCILPSSWGGVPlggleAAVVFIDTDGRFDILRLRSILEARIRAAIQAANSSDDEEDV--- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 188 kDFTLENILSHIYYFRCHDYTELLAQVYLLPDFLSD---HPKVQLVIIDGIAFPFRHD-------LEDLSLRTRLLNGLA 257
Cdd:cd19490 82 -EEIARECLQRLHIFRCHSSLQLLATLLSLENYLLSlsaNPELGLLLIDSISAFYWQDrfsaelaRAAPLLQEAALRAIL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16716605 258 QQMISLANNHRLAVILTNQM--------TTKIDKNQALLVP-------ALGESWGHAATIRLIFH 307
Cdd:cd19490 161 RELRRLRRRFQLVVIATKQAlfpgksasTDNPAANNAVSKAsapshreYLPRPWQRLVTHRLVLS 225
|
|
| Rad51D |
cd19489 |
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
103-320 |
1.38e-20 |
|
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51D, together with the other RAD51 paralogs, RAD51B, RAD51C, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410897 [Multi-domain] Cd Length: 209 Bit Score: 88.46 E-value: 1.38e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 103 GGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQipeCFGGVAgeAVFIDTEGSFMVDRVVSLATACIQhlhliagthTEEE 182
Cdd:cd19489 1 GGGLRTGEITELVGESSSGKTQLCLTAAANVA---SRSGQN--VLYIDTKSSFSARRLAQILKSRAQ---------DAEE 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 183 HQKAlkdftleniLSHIYYFRCHDYTELLAQVYLLPDFLSD-----HPKVQLVIIDGIA---FPFR---HDLEDLSlrtr 251
Cdd:cd19489 67 IDKA---------LQRIRVVRVFDPYELLDLLEELRNTLSQqqenlYSRLKLVIIDSLSaliSPLLggsKHSEGHA---- 133
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16716605 252 LLNGLAQQMISLANNHRLAVILTNQMTTKID-KNQALLVPALGESWGHAATIRLIF------HWEQKQRFATLYKS 320
Cdd:cd19489 134 LLASLARLLKKLAAEYQIAVLVTNLTVRGGDgGQQGSTKPALGEYWESVPSTRLLLsrdendPEESGVCTATLLKS 209
|
|
| recomb_radB |
TIGR02237 |
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB ... |
98-336 |
2.03e-20 |
|
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Pssm-ID: 274047 [Multi-domain] Cd Length: 209 Bit Score: 88.24 E-value: 2.03e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 98 LDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQipecfgGVAGEAVFIDTEGsFMVDRVVSLATAciqhlhliagt 177
Cdd:TIGR02237 1 IDELLGGGVERGTITQIYGPPGSGKTNICMILAVNAA------RQGKKVVYIDTEG-LSPERFKQIAED----------- 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 178 hteeehqkalkdfTLENILSHIYYFRCHDYTELLAQVYLLPDFLSDHpKVQLVIIDGIAFPFRHDLEDlsLRTRLLNGLA 257
Cdd:TIGR02237 63 -------------RPERALSNFIVFEVFDFDEQGVAIQKTSKFIDRD-SASLVVVDSFTALYRLELSD--DRISRNRELA 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 258 QQM---ISLANNHRLAVILTNQMTTKIDKNQALlvPALGESWGHAATIRLIFHWEQKQRFATLYKSPSQKE-STIPFQIT 333
Cdd:TIGR02237 127 RQLtllLSLARKKNLAVVITNQVYTDVNNGTLR--PLGGHLLEHWSKVILRLEKFRGRRLATLEKHRSRPEgESVYFRIT 204
|
...
gi 16716605 334 PQG 336
Cdd:TIGR02237 205 DDG 207
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
98-338 |
7.00e-09 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 55.31 E-value: 7.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 98 LDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDvqipecfGGVAGE-AVFIDTEGSfmVDRVVSLATAciqhlhliAG 176
Cdd:COG0467 9 LDELLGGGLPRGSSTLLSGPPGTGKTTLALQFLAE-------GLRRGEkGLYVSFEES--PEQLLRRAES--------LG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 177 THTEEEHQKALkdFTLENILSHIYYFrchDYTELLAQvylLPDFLSDHpKVQLVIIDGIAfPFRHDLEDLSLRTRLLNGL 256
Cdd:COG0467 72 LDLEEYIESGL--LRIIDLSPEELGL---DLEELLAR---LREAVEEF-GAKRVVIDSLS-GLLLALPDPERLREFLHRL 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 257 aqqmISLANNHRLAVILTNQMTTKIDKNQALLVPALGESWghaatirLIFHWEQKQ----RFATLYKSPSQK--ESTIPF 330
Cdd:COG0467 142 ----LRYLKKRGVTTLLTSETGGLEDEATEGGLSYLADGV-------ILLRYVELGgelrRALSVLKMRGSAhdRTIREF 210
|
....*...
gi 16716605 331 QITPQGFR 338
Cdd:COG0467 211 EITDGGIE 218
|
|
| RecA |
COG0468 |
RecA/RadA recombinase [Replication, recombination and repair]; |
91-155 |
3.20e-06 |
|
RecA/RadA recombinase [Replication, recombination and repair];
Pssm-ID: 440236 [Multi-domain] Cd Length: 351 Bit Score: 48.63 E-value: 3.20e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16716605 91 IITFCSALDNILG-GGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPecfGGVageAVFIDTEGSF 155
Cdd:COG0468 44 ISTGSLALDIALGvGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKA---GGI---AAFIDAEHAL 103
|
|
| ATPase |
pfam06745 |
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and ... |
98-131 |
8.59e-06 |
|
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and eukaryotes. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Pssm-ID: 429095 [Multi-domain] Cd Length: 231 Bit Score: 46.47 E-value: 8.59e-06
10 20 30
....*....|....*....|....*....|....
gi 16716605 98 LDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAV 131
Cdd:pfam06745 8 LDEILKGGFPEGRVVLITGGPGTGKTIFGLQFLY 41
|
|
| KaiC-like |
cd01124 |
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. ... |
98-277 |
1.73e-05 |
|
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410869 [Multi-domain] Cd Length: 222 Bit Score: 45.33 E-value: 1.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 98 LDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDvqipecfGGVAGE-AVFIDTEGSfmVDRVVslataciqhlhliag 176
Cdd:cd01124 8 LDELLGGGIPKGSVTLLTGGPGTGKTLFGLQFLYA-------GAKNGEpGLFFTFEES--PERLL--------------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16716605 177 thteeehQKALK---DFTLENILSHIyYFRCHDYTELLAqvYLLPDFLSD------HPKVQLVIIDGIAfPFRHDLEDLS 247
Cdd:cd01124 64 -------RNAKSfgwDFDEMEDEGKL-IIVDAPPTEAGR--FSLDELLSRilsiikSFKAKRVVIDSLS-GLRRAKEDQM 132
|
170 180 190
....*....|....*....|....*....|
gi 16716605 248 LRTRLLNGLAQQMISLannhRLAVILTNQM 277
Cdd:cd01124 133 RARRIVIALLNELRAA----GVTTIFTSEM 158
|
|
| PRK09302 |
PRK09302 |
circadian clock protein KaiC; Reviewed |
98-128 |
6.41e-04 |
|
circadian clock protein KaiC; Reviewed
Pssm-ID: 236461 [Multi-domain] Cd Length: 509 Bit Score: 41.40 E-value: 6.41e-04
10 20 30
....*....|....*....|....*....|.
gi 16716605 98 LDNILGGGIPLMKTTEVCGVPGVGKTQLCMQ 128
Cdd:PRK09302 20 FDDITHGGLPKGRPTLVSGTAGTGKTLFALQ 50
|
|
| RecA |
cd00983 |
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
90-155 |
1.38e-03 |
|
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Pssm-ID: 410863 [Multi-domain] Cd Length: 235 Bit Score: 39.85 E-value: 1.38e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16716605 90 FIITFCSALDNILG-GGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIpecFGGVageAVFIDTEGSF 155
Cdd:cd00983 4 VIPTGSLSLDIALGiGGLPRGRIIEIYGPESSGKTTLALHAIAEAQK---LGGT---AAFIDAEHAL 64
|
|
| KaiC-N |
cd19485 |
N-terminal domain of Circadian Clock Protein Kaic; KaiC is a circadian clock protein, most ... |
98-128 |
4.15e-03 |
|
N-terminal domain of Circadian Clock Protein Kaic; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410893 [Multi-domain] Cd Length: 226 Bit Score: 38.12 E-value: 4.15e-03
10 20 30
....*....|....*....|....*....|.
gi 16716605 98 LDNILGGGIPLMKTTEVCGVPGVGKTQLCMQ 128
Cdd:cd19485 8 FDDITHGGLPKGRPTLICGTAGTGKTLFAAQ 38
|
|
| |
