NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|90111729|ref|NP_418735|]
View 

putative fimbrial protein FimI [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

fimbrial protein( domain architecture ID 10007530)

fimbrial protein similar to Escherichia coli fimbrial adapter PapF, which is required for the correct presentation of the PapG adhesin at the distal end of the tip fibrillum

Gene Ontology:  GO:0009289|GO:0007155
PubMed:  1670938|22411982|2890081

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-179 2.04e-50

Pilin (type 1 fimbrial protein) [Cell motility];


:

Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 159.82  E-value: 2.04e-50
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729   1 MKRKRLFLLASLLPMFALAgnkwntTLPGGNMQFQGVIIAETCRIEAGDKQMTVNMGQISSNRFHAVGEDSAPVPFVIHL 80
Cdd:COG3539   1 MKKLLLALLLALALSAAAA------AAADGTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKL 74

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729  81 RECSTVVSERVGVAFHGVADGKNPDVLSVgEGPGIATNIGVALFDDEGNLVPINRPPANWKRLYSGSTSLHFIAKYRATG 160
Cdd:COG3539  75 TNCDAGTSNSVKVTFTGTADSANPGLLAN-TGSGGASGVGIQLLDSDGTPIPLGTPSSAVTLTSNGSATLPFYARYVATG 153

                       170
                ....*....|....*....
gi 90111729 161 RRVTGGIANAQAWFSLTYQ 179
Cdd:COG3539 154 ATVTAGSFNATATFTIDYQ 172
 
Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-179 2.04e-50

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 159.82  E-value: 2.04e-50
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729   1 MKRKRLFLLASLLPMFALAgnkwntTLPGGNMQFQGVIIAETCRIEAGDKQMTVNMGQISSNRFHAVGEDSAPVPFVIHL 80
Cdd:COG3539   1 MKKLLLALLLALALSAAAA------AAADGTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKL 74

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729  81 RECSTVVSERVGVAFHGVADGKNPDVLSVgEGPGIATNIGVALFDDEGNLVPINRPPANWKRLYSGSTSLHFIAKYRATG 160
Cdd:COG3539  75 TNCDAGTSNSVKVTFTGTADSANPGLLAN-TGSGGASGVGIQLLDSDGTPIPLGTPSSAVTLTSNGSATLPFYARYVATG 153

                       170
                ....*....|....*....
gi 90111729 161 RRVTGGIANAQAWFSLTYQ 179
Cdd:COG3539 154 ATVTAGSFNATATFTIDYQ 172
Fimbrial pfam00419
Fimbrial protein;
32-179 7.11e-33

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 114.46  E-value: 7.11e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729    32 MQFQGVI--IAETCRIEAGDKQmTVNMGQISSNRFHAVGEDSAPVPFVIHLrECSTV-VSERVGVAFHGVADGKNPDVLS 108
Cdd:pfam00419   1 INFTGTVtrVPATCKITAGTPI-EVDFGQIPVNELNAGGEGSRQKPFSITL-ECSSGsSAVKVTVGLFGTADASSPNLLL 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 90111729   109 VGEGPGIATNIGVALFDDEGNLVPINRP-PANWKRLYSGSTSLH-FIAKYRATGR-RVTGGIANAQAWFSLTYQ 179
Cdd:pfam00419  79 TGNGAGAATGVGIRLYDANGGALPPNNGtSSIPVSATAAVATGItFTASLVATTGgTPTAGDFNATATIVVDYQ 152
PRK15209 PRK15209
long polar fimbrial protein LpfA; Provisional
 30-179 9.86e-30

long polar fimbrial protein LpfA; Provisional


Pssm-ID: 185131 [Multi-domain]  Cd Length: 174  Bit Score: 107.36  E-value: 9.86e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729   30 GNMQFQGVIIAETCRIEAGDKQMTVNMGQISSNRFHAVGEDSAPVPFVIHLRECSTVVSERVGVAFHGVADGKNPDVLSV 109
Cdd:PRK15209  26 GTVKFTGEIVDAPCVVSTDSQNQEVVLGQVKKSVFKAIGDKSSAKPFQIKLEDCDITTNKKVNVSFNGVGDADDSTLVSV 105

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729  110 GEGPGIATNIGVALFDDEGNLVPINRPPANwKRLYSGSTSLHFIAKYRATGRRVTGGIANAQAWFSLTYQ 179
Cdd:PRK15209 106 STEAGAATGVGIGIYDNANTLVELNTGKST-TTLAAGQTVLYFTANYVSTKDTVTTGYGNAEVDFNLSYE 174
 
Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-179 2.04e-50

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 159.82  E-value: 2.04e-50
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729   1 MKRKRLFLLASLLPMFALAgnkwntTLPGGNMQFQGVIIAETCRIEAGDKQMTVNMGQISSNRFHAVGEDSAPVPFVIHL 80
Cdd:COG3539   1 MKKLLLALLLALALSAAAA------AAADGTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKL 74

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729  81 RECSTVVSERVGVAFHGVADGKNPDVLSVgEGPGIATNIGVALFDDEGNLVPINRPPANWKRLYSGSTSLHFIAKYRATG 160
Cdd:COG3539  75 TNCDAGTSNSVKVTFTGTADSANPGLLAN-TGSGGASGVGIQLLDSDGTPIPLGTPSSAVTLTSNGSATLPFYARYVATG 153

                       170
                ....*....|....*....
gi 90111729 161 RRVTGGIANAQAWFSLTYQ 179
Cdd:COG3539 154 ATVTAGSFNATATFTIDYQ 172
Fimbrial pfam00419
Fimbrial protein;
32-179 7.11e-33

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 114.46  E-value: 7.11e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729    32 MQFQGVI--IAETCRIEAGDKQmTVNMGQISSNRFHAVGEDSAPVPFVIHLrECSTV-VSERVGVAFHGVADGKNPDVLS 108
Cdd:pfam00419   1 INFTGTVtrVPATCKITAGTPI-EVDFGQIPVNELNAGGEGSRQKPFSITL-ECSSGsSAVKVTVGLFGTADASSPNLLL 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 90111729   109 VGEGPGIATNIGVALFDDEGNLVPINRP-PANWKRLYSGSTSLH-FIAKYRATGR-RVTGGIANAQAWFSLTYQ 179
Cdd:pfam00419  79 TGNGAGAATGVGIRLYDANGGALPPNNGtSSIPVSATAAVATGItFTASLVATTGgTPTAGDFNATATIVVDYQ 152
PRK15209 PRK15209
long polar fimbrial protein LpfA; Provisional
 30-179 9.86e-30

long polar fimbrial protein LpfA; Provisional


Pssm-ID: 185131 [Multi-domain]  Cd Length: 174  Bit Score: 107.36  E-value: 9.86e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729   30 GNMQFQGVIIAETCRIEAGDKQMTVNMGQISSNRFHAVGEDSAPVPFVIHLRECSTVVSERVGVAFHGVADGKNPDVLSV 109
Cdd:PRK15209  26 GTVKFTGEIVDAPCVVSTDSQNQEVVLGQVKKSVFKAIGDKSSAKPFQIKLEDCDITTNKKVNVSFNGVGDADDSTLVSV 105

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729  110 GEGPGIATNIGVALFDDEGNLVPINRPPANwKRLYSGSTSLHFIAKYRATGRRVTGGIANAQAWFSLTYQ 179
Cdd:PRK15209 106 STEAGAATGVGIGIYDNANTLVELNTGKST-TTLAAGQTVLYFTANYVSTKDTVTTGYGNAEVDFNLSYE 174
PRK15200 PRK15200
type 1 fimbrial protein subunit FimI;
1-178 1.02e-28

type 1 fimbrial protein subunit FimI;


Pssm-ID: 185122  Cd Length: 177  Bit Score: 104.55  E-value: 1.02e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729    1 MKRKR--LFLLASLLPMFALAgnkwnTTLPGGNMQFQGVIIAETCRIEAGDKQMTVNMGQISSNRFHAVGEDS-APVPFV 77
Cdd:PRK15200   1 MIRKGaaLVGLVLMSPVIAQP-----VMVESGRVHLRGQLVNGGCAVATESQDLRVLMGQYRTNAFTGPGSFApVSVPFS 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729   78 IHLRECSTVVSERVGVAFHGVADGKNPDV-LSVGEGPGIAtNIGVALFDDEGNLVPINRPPANWKRLYSGSTSLHFIAKY 156
Cdd:PRK15200  76 LRLISCSAEVWRHVGIAFAGVTPAEDPHVfLASGEGIGNA-GIGLALFDDQQRQIIPNTLPLHYAPILTSEMTLHFTARY 154

                        170       180
                 ....*....|....*....|..
gi 90111729  157 RATGRRVTGGIANAQAWFSLTY 178
Cdd:PRK15200 155 RAISENMTPGRIHSEVWFTLVY 176
PRK15194 PRK15194
type 1 fimbrial protein subunit FimA;
9-179 6.26e-28

type 1 fimbrial protein subunit FimA;


Pssm-ID: 237920  Cd Length: 185  Bit Score: 103.11  E-value: 6.26e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729    9 LASLlpMF----ALAGNKWNTTLPGGNMQFQGVIIAETCRIEAGDKQMTVNMGQISSNRFHAVGEDSAPVPFVIHLRECS 84
Cdd:PRK15194  10 IASL--LFvagaAYAADPTPVSVDGGTIHFEGELVNAACSVNTDSADQTVTLGQYRTAIFTAVGNTTALIPFTIQLNDCD 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729   85 TVVSERVGVAFHGVADGKNPDVLSV--GEGPGIATNIGVALFDDEGN-LVPINRPPANWKRLYSGSTSLHFIAKYRATGR 161
Cdd:PRK15194  88 PVVAATAAVAFSGQADATNDNLLAVasSTNTTTATGVGIEILDNTSSiLKPDGATFSANQNLIEGTNTLHFSARYKATGT 167

                        170
                 ....*....|....*...
gi 90111729  162 RVTGGIANAQAWFSLTYQ 179
Cdd:PRK15194 168 SASAGQANADATFIMKYE 185
PRK15191 PRK15191
fimbrial protein BcfF; Provisional
 30-179 7.45e-23

fimbrial protein BcfF; Provisional


Pssm-ID: 185113 [Multi-domain]  Cd Length: 172  Bit Score: 89.39  E-value: 7.45e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729   30 GNMQFQGVIIAETCRIEAGDKQMTVNMGQISSNRFHAVGEDSAPVPFVIHLRECSTVVSErVGVAFHGVADGKNPDVLSV 109
Cdd:PRK15191  23 GRVYVSGTITDNTCSLSPGSENINVAMGAVSQRQFYRAGDGSAWQPFAIDLQNCGSTASG-VTVSFSGAADSRNTDLLAL 101

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 90111729  110 GEGPGIATNIGVALFDDEGNLVPINRpPANWKRLYSGSTSLH--FIAKYRATGRRVTGGIANAQAWFSLTYQ 179
Cdd:PRK15191 102 TAGESDASGIGIALYDQNKTLIPLGQ-ESDVVTLSPGQASAHlqFYARYLADGGAVTPGDANASATFILAYE 172
PRK15205 PRK15205
long polar fimbrial protein LpfE; Provisional
 1-179 5.18e-20

long polar fimbrial protein LpfE; Provisional


Pssm-ID: 237923  Cd Length: 176  Bit Score: 82.21  E-value: 5.18e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729    1 MKRKRLFLLASLLPMFALAGNKWNTTLPGGNMQFQGVIIAETCRIEAGDkqMTVNMGQISSNRFHAVGEDSAPVPFVIHL 80
Cdd:PRK15205   1 MKNKRALLPLALLLLTASGMAAPTDLGPAGDIHFTITIKAKACELEKDS--LEVDMGTMVLQKPVKVGTELNQKNFSIGL 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729   81 RECSTVVseRVGVAFHGVADGKNPDVLSVGEGPgiATNIGVALFDDEG-NLVPINR--PPANWKRLYSGSTSLHFIAKYR 157
Cdd:PRK15205  79 KDCDGIS--KASVTMDGSPDPDDPSLFALDAGG--ATGVALKIKTSKGtQQYPKSTdgTPVEWAINGDGTTQLNYIASYV 154

                        170       180
                 ....*....|....*....|..
gi 90111729  158 ATGRRVTGGIANAQAWFSLTYQ 179
Cdd:PRK15205 155 PVNADATVGTANATVNFSVTYE 176
PRK15190 PRK15190
fimbrial protein BcfE; Provisional
 31-179 6.62e-19

fimbrial protein BcfE; Provisional


Pssm-ID: 185112  Cd Length: 181  Bit Score: 79.36  E-value: 6.62e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729   31 NMQFQGVIIAETCRIEAGDKQMTVNMGQISSNRFHAVGEDSAPVPFVIHLRECSTVVSErVGVAFHGVADGKNPDVLSV- 109
Cdd:PRK15190  29 NLEFTGTIVAQTCDIDISSLSQSIDLGQFAVGDFPSTGTTTKFKPFNINLKNCSRGIAG-AKIWFTGEPDPDNPALLAIt 107

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 90111729  110 ----GEGPGIATNIGVALFDDEGNLVPINRPPANWKRLYSGSTSLHFIAKYRATGRRVTGGIANAQAWFSLTYQ 179
Cdd:PRK15190 108 dtgmGSGNMLASGVGVEILNDDQDTISINNADSVVYPLKAGRNTLSFYIRYKSTRPTVTSGNATAVMYFDMQYE 181
lpfA PRK15289
fimbrial protein; Provisional
 1-179 1.57e-16

fimbrial protein; Provisional


Pssm-ID: 185189  Cd Length: 190  Bit Score: 73.45  E-value: 1.57e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729    1 MKRKRL---FLLASLLpmfaLAGNkwnTTLPGGNMQFQGVIIAETCRIEAGDKQMTVNMGQISSNRFHAVGEDSAPVPFV 77
Cdd:PRK15289   1 MKRNIIggaFTLASLM----LAGH---ALAEDGVVHFVGEIVDTTCEVTSDTADQIVPLGKVSKNAFSGVGSLASPQKFS 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729   78 IHLRECSTVVSeRVGVAFHGVADGKNPDVLSVG-----EGPGIATNIGVALFDDEGNLVPINRPPANWKRLY-------- 144
Cdd:PRK15289  74 IKLENCPATYT-QAAVRFDGTEAPGGDGDLKVGtpltaGNPGDFTGTGQAIAATGVGIRIFNQSDNSQVKLYndsaytai 152

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 90111729  145 --SGSTSLHFIAKYRATGRRVTGGIANAQAWFSLTYQ 179
Cdd:PRK15289 153 daEGKAEMKFIARYVATNATVTAGTANADSQFTVEYK 189
PRK09733 PRK09733
fimbrial-like protein;
11-179 2.22e-16

fimbrial-like protein;


Pssm-ID: 182053  Cd Length: 181  Bit Score: 72.67  E-value: 2.22e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729   11 SLLPMFA---LAGNKWNTTlPGGNMQFQGVIIAETCRIEAGDKQMTVNMGQISSNRFHAvGEDSAPVPFVIHLREC---- 83
Cdd:PRK09733   5 SLLVAGVamiLSNNVFADE-GHGIVKFKGEVISAPCSIKPGDEDLTVNLGEVADTVLKS-DQKSLAEPFTIHLQDCmlsq 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729   84 STVVSERVGVAFHGVA-DGKNPDVL-SVGEGP-GIATNIGVALFDDEGNLVPINRPPANWKRLYSGSTSLHFIAKYRATG 160
Cdd:PRK09733  83 GGTTYSKAKVTFTTANtMTGQSDLLkNTKETEiGGATGVGVRILDSQSGEVTLGTPVVITFNNTNSYQELNFKARMESPS 162

                        170
                 ....*....|....*....
gi 90111729  161 RRVTGGIANAQAWFSLTYQ 179
Cdd:PRK09733 163 KDATPGNVYAQADYKIAYE 181
PRK09934 PRK09934
fimbriae assembly protein;
1-178 5.03e-16

fimbriae assembly protein;


Pssm-ID: 182153 [Multi-domain]  Cd Length: 171  Bit Score: 71.46  E-value: 5.03e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729    1 MKRKRLFLLASLLpmfaLAGNKW-NTTLPGGNMQFQGVIIAETCRIEAGDKQMTVNMGQISSNRFHAVGEDSAPVPFVIH 79
Cdd:PRK09934   1 MRRVFFACFCGLL----WSPLSWaADPLGEINIELHGNVVDFTCTVNTADSDKTVDLGTWPTKQLLNAGDTTQPVPFSLK 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729   80 LRECStvvSERVGVAFHGVaDGKNPDVLSVGEgPGIATNIGVALFDDEGNLVPINRPPANWKRLYSGSTSLHFIAKYRAT 159
Cdd:PRK09934  77 LEGCP---PGSASITFTGT-PASDTNLLALDD-PAMAQTVAIEIRDSDRSRLALGQASPTVEVDANGNATLNFYANYIAL 151

                        170
                 ....*....|....*....
gi 90111729  160 GRRVTGGIANAQAWFSLTY 178
Cdd:PRK09934 152 ADGVQPGVAKADATFMINY 170
PRK15210 PRK15210
fimbrial protein;
30-178 2.61e-15

fimbrial protein;


Pssm-ID: 185132  Cd Length: 194  Bit Score: 70.11  E-value: 2.61e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729   30 GNMQFQGVIIAETCRIEAGDKQMTVNMGQISSNRFHAVGEDSAPVPFVIHLRECSTVVSE-----------RVGVAFHGV 98
Cdd:PRK15210  35 GKILFTGTITNSPCDIAPGDDAITVPFGQISYRKLNTADATTESKPFTIHLQNCAFDPNIpdtagsagkmsKVTVSFSGT 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729   99 ADGKNPDVLSVgegpGIATNIGVALF-DDEGNLVPINR--PPANWKRLYSGSTSLHFIAKYRATGRRVTGGIANAQAWFS 175
Cdd:PRK15210 115 ANTSKKAYTTS----GSAQHVGVQLLkSDNTSIIEPNTpmPDGDAQQLQAGNNELNFFARLIALDNGVTPGDFNASVTYT 190


                 ...
gi 90111729  176 LTY 178
Cdd:PRK15210 191 LKY 193
PRK15187 PRK15187
fimbrial protein BcfA; Provisional
 1-178 3.08e-14

fimbrial protein BcfA; Provisional


Pssm-ID: 185109  Cd Length: 180  Bit Score: 67.15  E-value: 3.08e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729    1 MKRKRLFLLASLLPMFALAGNKW--NTTLPGGNMQFQGVIIAETCRIEAGDKQMTVNMGQISSNRFHAVG-EDSAPVPFV 77
Cdd:PRK15187   1 MKKPVLALMVSAIAFGGMLSTAQadTTTVTGGTVNFVGQVVDAACSVSADSVDQTVTLGQVRASKLTEAGmVANQKEDFT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729   78 IHLRECSTVVSERVGVAFHGVADGKNPDVLSVGEGPGIATNIGVALFDDEGNLVPINRPPANwKRLYSGSTSLHFIAKYR 157
Cdd:PRK15187  81 IKLEDCDTQTSQNAAVIFNGQQDANQPGSLANTAGAGSATNVALQLYGPDGQALNIGESSST-VTLNDGENVIPLSVDYI 159

                        170       180
                 ....*....|....*....|.
gi 90111729  158 ATGrRVTGGIANAQAWFSLTY 178
Cdd:PRK15187 160 ATG-TATAGNVTATATFSMVY 179
PRK15260 PRK15260
fimbrial protein SteF; Provisional
 26-179 5.14e-13

fimbrial protein SteF; Provisional


Pssm-ID: 185168  Cd Length: 178  Bit Score: 63.94  E-value: 5.14e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729   26 TLPGG--NMQFQGVIIAETCRIEAGDKQM-TVNMGQISSNRFHAVGEdSAPVPFVIHLRECSTVVSERVGVAFHGVADGK 102
Cdd:PRK15260  23 TLPAAtpNVHYSGKLVAGACNLVVDNDTMaTVDFHTIGSDNFDASGQ-TTPVPFTLSLQDCKTALANGVLVTFQGVEDST 101

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 90111729  103 NPDVLSVgEGPGIATNIGVALFDDEGNLVPINRPPANWKRLYSGSTSLHFIAKYRAT-GRRVTGGIANAQAWFSLTYQ 179
Cdd:PRK15260 102 LPGLLAL-EPSSEASGFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLQKYaGEEVMPGEFSGSATVSFEYQ 178
PRK15296 PRK15296
fimbrial protein SthA;
1-179 1.05e-11

fimbrial protein SthA;


Pssm-ID: 185196  Cd Length: 181  Bit Score: 60.49  E-value: 1.05e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729    1 MKRKRLFLLASLLPMFALAGNKWNTtlpggnMQFQGVIIAETCRIEA-GDKQMTVNMGQISSNRFHAVGEDSAPVPFVIH 79
Cdd:PRK15296   1 MFNKKIIILAMLTAVASTPVFAQNT------ITFNGKIYDQACTVQVnGSTDTTIDLGNYSKERIAEKGATTDYVPFTVS 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729   80 LREC---STVVSERVGVAFHGVADGKNPDVL-SVGEGPGI-ATNIGVALFDDEGNLVPINRPPANWKRLYSGST-SLHFI 153
Cdd:PRK15296  75 LVSCpeaGTGVPTQAMFRFHGATDDSNPTYFkNADEGSETgAAGVGISIQNASHSDVTDNTDDAAVNLPTDGSTaDFTYY 154

                        170       180
                 ....*....|....*....|....*..
gi 90111729  154 AKYRATGR-RVTGGIANAQAWFSLTYQ 179
Cdd:PRK15296 155 AAMANDGSaTVTGGDVSTQVTYTVSYQ 181
PRK15300 PRK15300
fimbrial protein StiA; Provisional
 9-178 2.40e-09

fimbrial protein StiA; Provisional


Pssm-ID: 185200  Cd Length: 179  Bit Score: 53.95  E-value: 2.40e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729    9 LASLLPMFALAGNKWNTTLPGGNMQFQGVIIAETCRIEAGDKQMTVNmgQISSNRFHAVGEDSAPVPFVIHLRECSTVVS 88
Cdd:PRK15300   8 LTVALAAITLSPAALADTAKDGTVHITGLIKQNACTVKTDSVEVTLQ--EEFASLFTAAGQTAGDTDFTIELENCDANVY 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729   89 ERVGVAFHGVADGKNPDVLsvgEGPGIATNIGVALFDDEGNLV----------PINRPPAnwkrlySGST--SLHFIAKY 156
Cdd:PRK15300  86 SSVQARFEGTLDGTDATIL---KNEDDAENIGVQILDKTSTPMtfndlqawsaAVALPTA------EGVTelSMPFTARY 156

                        170       180
                 ....*....|....*....|..
gi 90111729  157 RATGRRVTGGIANAQAWFSLTY 178
Cdd:PRK15300 157 IATAVPVKSGTVDATATFYLQY 178
PRK15292 PRK15292
type 1 fimbrial protein;
30-178 1.57e-07

type 1 fimbrial protein;


Pssm-ID: 237935 [Multi-domain]  Cd Length: 365  Bit Score: 49.95  E-value: 1.57e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729   30 GNMQFQgvIIAETCRIEAGDkqMTVNMGQISSNRFH---AVGEDSAPVPFVIhlrECSTVVSERVGVAfhgVADGKNPD- 105
Cdd:PRK15292 188 GNTQLI--MKAMGCRVETPA--LTFDMGSINAGSFAnsqTVGTAEQDILLSC---EPGTNVSASVSAQ---PASGDNPDn 257

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729  106 ---VLSVGEGPGIATNIGVAL--------FDDEGnlVPINRP-------------------------PANWKRLYSGSTS 149
Cdd:PRK15292 258 tviALSNASAPTSATGVGVQLniqapdagFFTDS--LPINTKidlftstrttnadgsqtvsysyftnPDSPGGAMNMSTT 335

                        170       180
                 ....*....|....*....|....*....
gi 90111729  150 LHFIAKYRATGRRVTGGIANAQAWFSLTY 178
Cdd:PRK15292 336 LKISANYYKTGATVTAGQANATGTLTLTY 364
PRK15293 PRK15293
fimbrial protein SthD;
1-128 2.70e-07

fimbrial protein SthD;


Pssm-ID: 185193  Cd Length: 185  Bit Score: 48.13  E-value: 2.70e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729    1 MKRKRLFLLASLLPMFALAGNKWNTTLPGG-----NMQFQGVIIAETCRIEAGDkqmTVNMGQISSNRFHAVGEDSAPVP 75
Cdd:PRK15293   1 MNMNRFAALAALLTFTGLALWSPSISAAYNtadavDINVTGLIYADPCTVTVPD---TLSLGQYARADIAVAGGNTATIP 77

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 90111729   76 FVIHLRECSTVVSErVGVAFHGVA--DGKNPDVLSVGEGPGIATNIGVALFDDEG 128
Cdd:PRK15293  78 FTIKMTNCPATTTK-AAISFNGVPypDPNYASAIYANSAANPAQDLGLQLFNLDG 131
PRK15283 PRK15283
fimbrial major subunit StfA;
30-120 2.06e-04

fimbrial major subunit StfA;


Pssm-ID: 185183  Cd Length: 186  Bit Score: 40.14  E-value: 2.06e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729   30 GNMQFQGVIIAETCRIEAGDKQMTVNMGQISSNRFHAvGEDSAPVPFVIHLRECSTVVSERVGVAFHGVAD--GKNPDVL 107
Cdd:PRK15283  29 GTVTFTGTIEDSPCSIVVGDEHQTVNLGHIGTGSLMG-GKESSKVDFHIGLENCAFTTEKEASTVFSAIGNesSANPGSV 107

                         90
                 ....*....|....*...
gi 90111729  108 SV-----GEGPGIATNIG 120
Cdd:PRK15283 108 ALmriggGEMAGSSIVIG 125
PRK15307 PRK15307
major fimbrial protein StkA; Provisional
 5-179 3.17e-04

major fimbrial protein StkA; Provisional


Pssm-ID: 185207  Cd Length: 201  Bit Score: 39.64  E-value: 3.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729    5 RLFLLASLLPMFALAGNKWNTTLPGGNMQFQGVIIAETCRIEAGD------KQMTVNMGQISSNRFHAVGEDSAPV---P 75
Cdd:PRK15307   4 KKYGLAAAVAMTLSASSAMAADPDTGTITFHGLVTNNTCNISLDNkidqdgNDFDITLPTVFVKDFATALGVNSTLgekQ 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729   76 FVIHLRECSTVVSERVGVAFH---GVADGKNPDVLSVGEGPGIATNIGVALFDD---EGNLVPINRPPANWKR--LYSGS 147
Cdd:PRK15307  84 FTLNLSECDNATLKDASAQFNswgGSSATSGGLLVPPANLQGSATNVNLVLANNgntATDLIKIDQPNNTQKAtiSTDGT 163

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 90111729  148 TSLHFIAKY------RATGRRVTGGIANAQAWFSLTYQ 179
Cdd:PRK15307 164 GDLFYRVAYtqgqkwNADTSPVTSGTVQAQVAFTMIYN 201
PRK15306 PRK15306
fimbrial protein;
1-179 1.44e-03

fimbrial protein;


Pssm-ID: 237938  Cd Length: 190  Bit Score: 37.72  E-value: 1.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729    1 MKRKRLFLLASLLPMFALAGNKWNTTLPGGNMQFQGVIIAETC--RIEAGDKQMTVNMGQISSN----RFHAVGEDSAPV 74
Cdd:PRK15306   1 MKRNRLSLPIAALAVMAASGSALAANSTNLDVNFTATILETTCdmKLVGGTGSDTVQELIIGNSsgevRIDDVRAGTATA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111729   75 PFVIHLRECSTVVSErVGVAFHGVADGKNPDVLSVGeGPGIATNIGVALFDDEGNLVP--INRpPANWKRLY-------S 145
Cdd:PRK15306  81 DFKLVIVECPASLQS-LKTSINGTPSGYSTKILTNG-TKGSADYIGVSVARASKPDEPfvINS-TADSERLVwseveinS 157

                        170       180       190
                 ....*....|....*....|....*....|....
gi 90111729  146 GSTSLHFIAKYRATGRRVTGGIAnAQAWFSLTYQ 179
Cdd:PRK15306 158 KEVPLIAIMKETKANSATTGAFS-AVATFVFSYE 190
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH