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Conserved domains on  [gi|16130629|ref|NP_417202|]
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formate hydrogenlyase subunit HycD [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

respiratory chain complex I subunit 1 family protein( domain architecture ID 10002022)

respiratory chain complex I subunit 1 family protein similar to Escherichia coli formate hydrogenlyase subunit 4 (HycD) and hydrogenase-4 component C (HyfC)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
1-305 4.23e-103

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


:

Pssm-ID: 440415  Cd Length: 303  Bit Score: 303.64  E-value: 4.23e-103
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629   1 MSVLYPLIQALVLFAVAPLLSGITRVARARLHNRRGPGVLQEYRDIIKLLGRQSVGPDASGWVFRLTPYVMVGVMLTIAT 80
Cdd:COG0650   2 MLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGPPILQPYYDLLKLLRKETVVPETASWLFRAAPYVALAAMLLAAL 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629  81 ALPVVTVGSPLPQLGDLITLLYLFAIARFFFAISGLDTGSPFTAIGASREAMLGVLVEPMLLLGLWVAAQVAGSTNISNI 160
Cdd:COG0650  82 LVPVLTTGPPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAGSTSLSDI 161
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629 161 TDTVY-HWPLSQSIPLVLALCACAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGFGVMKWGISLKQLVVLQMFVGVF 239
Cdd:COG0650 162 VAYQAaHGPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLLSLFVNLF 241
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16130629 240 IPWGqmetfTAGGLLLALVIAIVKLVVGVLVIALFENSMARLRLDITPRITWAGFGFAFLAFVSLL 305
Cdd:COG0650 242 LPWG-----IALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLAV 302
 
Name Accession Description Interval E-value
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
1-305 4.23e-103

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 303.64  E-value: 4.23e-103
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629   1 MSVLYPLIQALVLFAVAPLLSGITRVARARLHNRRGPGVLQEYRDIIKLLGRQSVGPDASGWVFRLTPYVMVGVMLTIAT 80
Cdd:COG0650   2 MLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGPPILQPYYDLLKLLRKETVVPETASWLFRAAPYVALAAMLLAAL 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629  81 ALPVVTVGSPLPQLGDLITLLYLFAIARFFFAISGLDTGSPFTAIGASREAMLGVLVEPMLLLGLWVAAQVAGSTNISNI 160
Cdd:COG0650  82 LVPVLTTGPPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAGSTSLSDI 161
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629 161 TDTVY-HWPLSQSIPLVLALCACAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGFGVMKWGISLKQLVVLQMFVGVF 239
Cdd:COG0650 162 VAYQAaHGPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLLSLFVNLF 241
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16130629 240 IPWGqmetfTAGGLLLALVIAIVKLVVGVLVIALFENSMARLRLDITPRITWAGFGFAFLAFVSLL 305
Cdd:COG0650 242 LPWG-----IALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLAV 302
NADHdh pfam00146
NADH dehydrogenase;
10-302 4.39e-45

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 154.94  E-value: 4.39e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629    10 ALVLFAVApLLSGITRVARARLHNRRGP------GVLQEYRDIIKLLGRQSVGPD-ASGWVFRLTPYVMVGVMLTIATAL 82
Cdd:pfam00146   7 VPLLLAVA-FLTWAERKVLARMQRRIGPnrvgpfGLLQPFADALKLLFKEDIIPAgADKFLFLLAPIIAFIPALLAFAVI 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629    83 PVVTVGSPLPQLGDLITLLYLFAIARFFFAISGLDTGSPFTAIGASREAMLGVLVEPMLLLGLWVAAQVAGSTNISNITD 162
Cdd:pfam00146  86 PFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVE 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629   163 TVYHWPLSqsIPLVLALCACAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGFGVMKWGISLKQLVVLQMFVGVFI-- 240
Cdd:pfam00146 166 AQAGGWFI--PLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLgg 243
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16130629   241 ---PWGqmetftagglLLALVIAIVKLVVGVLVIALFENSMARLRLDITPRITWAGF-GFAFLAFV 302
Cdd:pfam00146 244 wlgPFP----------LPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLlPLSLANLL 299
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
3-294 5.96e-17

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 79.85  E-value: 5.96e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629    3 VLYPLIQALVLFAVAPLLSGITRVARARLHNRRGP------GVLQEYRDIIKLLGRQSVGP-DASGWVFRLTPYVmvgVM 75
Cdd:PRK06076  13 LLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPnrvgpfGLLQLVADGIKLLFKEDIIPaGADKVLFLLAPVI---AF 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629   76 LTIATALPVVTVGSPLpQLGDL-ITLLYLFAIAR---FFFAISGLDTGSPFTAIGASREAMLGVLVEpmLLLGLWVAAQV 151
Cdd:PRK06076  90 IPAFLAWAVIPFGPEL-VIADLnVGILYILAISSlgvYGVILAGWASNNKYALLGALRAAAQMISYE--VPLGLSLLAVV 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629  152 --AGSTNISNITDT-VYHWPLsqsIPLVLALCACAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGsgfgvMKWG----- 223
Cdd:PRK06076 167 llAGSLNLSDIVEAqFLSWNI---IPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSG-----MKFGlfflg 238
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16130629  224 -----ISLKQLVVLqMFVGVFIPWGQMETFTAGGLLLALviaivKLVVGVLVIALFENSMARLRLDITPRITWAGF 294
Cdd:PRK06076 239 eyinmILVSALITT-LFLGGWLPPFPLGGGIPGAIWFVL-----KVAFFVFLFIWLRATLPRYRYDQLMRLGWKVL 308
 
Name Accession Description Interval E-value
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
1-305 4.23e-103

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 303.64  E-value: 4.23e-103
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629   1 MSVLYPLIQALVLFAVAPLLSGITRVARARLHNRRGPGVLQEYRDIIKLLGRQSVGPDASGWVFRLTPYVMVGVMLTIAT 80
Cdd:COG0650   2 MLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGPPILQPYYDLLKLLRKETVVPETASWLFRAAPYVALAAMLLAAL 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629  81 ALPVVTVGSPLPQLGDLITLLYLFAIARFFFAISGLDTGSPFTAIGASREAMLGVLVEPMLLLGLWVAAQVAGSTNISNI 160
Cdd:COG0650  82 LVPVLTTGPPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAGSTSLSDI 161
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629 161 TDTVY-HWPLSQSIPLVLALCACAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGFGVMKWGISLKQLVVLQMFVGVF 239
Cdd:COG0650 162 VAYQAaHGPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLLSLFVNLF 241
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16130629 240 IPWGqmetfTAGGLLLALVIAIVKLVVGVLVIALFENSMARLRLDITPRITWAGFGFAFLAFVSLL 305
Cdd:COG0650 242 LPWG-----IALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLAV 302
NADHdh pfam00146
NADH dehydrogenase;
10-302 4.39e-45

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 154.94  E-value: 4.39e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629    10 ALVLFAVApLLSGITRVARARLHNRRGP------GVLQEYRDIIKLLGRQSVGPD-ASGWVFRLTPYVMVGVMLTIATAL 82
Cdd:pfam00146   7 VPLLLAVA-FLTWAERKVLARMQRRIGPnrvgpfGLLQPFADALKLLFKEDIIPAgADKFLFLLAPIIAFIPALLAFAVI 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629    83 PVVTVGSPLPQLGDLITLLYLFAIARFFFAISGLDTGSPFTAIGASREAMLGVLVEPMLLLGLWVAAQVAGSTNISNITD 162
Cdd:pfam00146  86 PFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVE 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629   163 TVYHWPLSqsIPLVLALCACAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGFGVMKWGISLKQLVVLQMFVGVFI-- 240
Cdd:pfam00146 166 AQAGGWFI--PLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLgg 243
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16130629   241 ---PWGqmetftagglLLALVIAIVKLVVGVLVIALFENSMARLRLDITPRITWAGF-GFAFLAFV 302
Cdd:pfam00146 244 wlgPFP----------LPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLlPLSLANLL 299
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
1-291 2.16e-21

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 92.12  E-value: 2.16e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629   1 MSVLYPLIQALVLFAVAPLLSGIT-----RVArARLHNRRGP------GVLQEYRDIIKLLGRQSVGPD-ASGWVFRLTP 68
Cdd:COG1005   6 APLLITLIKALVILVFLLLLAAYLtwaerKVL-ARMQDRIGPnrvgpfGLLQPLADGLKLLFKEDIIPAgADKFLFLLAP 84
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629  69 YVMVGVMLTIATALPVvtvgSPLPQLGDL-ITLLYLFAIAR---FFFAISGLDTGSPFTAIGASREAMLGVLVEPMLLLG 144
Cdd:COG1005  85 ILAFIPALLAFAVIPF----GPGLVLADLnVGLLYVLAVSSlgvYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLS 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629 145 LWVAAQVAGSTNISNITD--TVYHWPLsqsIPLVLALCACAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGFGVMKW 222
Cdd:COG1005 161 LLGVVLLAGSLNLSEIVEaqAGGLWFI---LPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFL 237
                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16130629 223 GISLKQLVVLQMFVGVF-----IPWGqmetFTAGGLLLALVIAIVKLVVGVLVIALFENSMARLRLDITPRITW 291
Cdd:COG1005 238 AEYANMFLVSALATTLFlggwlGPFP----ILPLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGW 307
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
3-294 5.96e-17

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 79.85  E-value: 5.96e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629    3 VLYPLIQALVLFAVAPLLSGITRVARARLHNRRGP------GVLQEYRDIIKLLGRQSVGP-DASGWVFRLTPYVmvgVM 75
Cdd:PRK06076  13 LLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPnrvgpfGLLQLVADGIKLLFKEDIIPaGADKVLFLLAPVI---AF 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629   76 LTIATALPVVTVGSPLpQLGDL-ITLLYLFAIAR---FFFAISGLDTGSPFTAIGASREAMLGVLVEpmLLLGLWVAAQV 151
Cdd:PRK06076  90 IPAFLAWAVIPFGPEL-VIADLnVGILYILAISSlgvYGVILAGWASNNKYALLGALRAAAQMISYE--VPLGLSLLAVV 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629  152 --AGSTNISNITDT-VYHWPLsqsIPLVLALCACAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGsgfgvMKWG----- 223
Cdd:PRK06076 167 llAGSLNLSDIVEAqFLSWNI---IPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSG-----MKFGlfflg 238
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16130629  224 -----ISLKQLVVLqMFVGVFIPWGQMETFTAGGLLLALviaivKLVVGVLVIALFENSMARLRLDITPRITWAGF 294
Cdd:PRK06076 239 eyinmILVSALITT-LFLGGWLPPFPLGGGIPGAIWFVL-----KVAFFVFLFIWLRATLPRYRYDQLMRLGWKVL 308
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
1-294 4.99e-07

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 50.16  E-value: 4.99e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629    1 MSVLYPLIQALVLFAVAPLLSgitRVARARLHNRRGP------GVLQEYRDIIKLLGRQSVGPDASGwvfrLTPYVMVGV 74
Cdd:MTH00010   7 ISILLSYVMALLAMAFYTLLE---RKALGYFQLRKGPnkvglaGIPQPFADAIKLFTKEQTKPSPAN----ITPFLGAPM 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629   75 MLTIATALPVVTVGSPLPQLGDLITLLYLFAIAR---FFFAISGLDTGSPFTAIGASREAMLGVLVEPMLLLGLWVAAQV 151
Cdd:MTH00010  80 MSLILALLLWSLYPHKHPSFFLKFSILLFLCVSSmnvYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLI 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629  152 AGSTNISNITDTVYHWPLSQSIPLVLALCACAFAtfiEMGKLPFDLAEAEQELQEGPLSEYSGSGFGVMkWGISLKQLVV 231
Cdd:MTH00010 160 LQTFSFSKIIMSQYSWILLMIIPLTVSWFITNLA---ETNRTPFDFAEGESELVSGFNVEYSSGLFALI-FMAEYANILI 235
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16130629  232 LQMFVGVFIPwGQMETFTAGGLLLalviaIVKLVVGVLVIALFENSMARLRLDITPRITWAGF 294
Cdd:MTH00010 236 MSLFTSVFFT-SFIPSIFISDLML-----ILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSF 292
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
1-307 1.12e-06

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 49.36  E-value: 1.12e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629    1 MSVLYPLIQAL-VLFAVApLLSGITRVARARLHNRRGP------GVLQEYRDIIKLLGRQSVGPD-ASGWVFRLTPYVMV 72
Cdd:MTH00195   3 ISVIHFLIQIVpVLLAVA-FFTLLERKILGYIQLRKGPnkvgpyGLLQPIADAVKLFIKEPVKPStSSLWLFFFAPVLAL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629   73 GVMLTIATALPVvTVGSPLPQLGdLITLLYLFAIARFFFAISGLDTGSPFTAIGASREAMLGVLVEPMLLLGLWVAAQVA 152
Cdd:MTH00195  82 ALALILWVPIPS-PFGFSSINLS-VLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLA 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629  153 GSTNISNITDtvyhwplSQSIPLVLALCA-CAF----ATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGFGVmkwgislk 227
Cdd:MTH00195 160 GSFDFTIMVI-------SQGFSWVILLCPpISFmwyvSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFAL-------- 224
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629  228 qlvvlqMFVGVFIPWGQMETFTAGGLLLALVIAIVKLVVGVL--VIALFENSMARLRLDITPRITWAGFGFAFLAFVSLL 305
Cdd:MTH00195 225 ------IFMAEYSNIIFMSVLTTILFLGGGGTIIVALKSLFLsfCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPL 298

                 ..
gi 16130629  306 AA 307
Cdd:MTH00195 299 AA 300
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
8-307 2.30e-06

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 48.47  E-value: 2.30e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629    8 IQALVLFAvaPLLSGITRVARAR------LHNRRGP------GVLQEYRDIIKLLGRQSVGPD-ASGWVFRLTPYVMVGV 74
Cdd:MTH00029  11 IKLLIIFV--PLLLSVAYLTLAErkvlglMQNRKGPaivgpwGLVQPIADGVKLLTKELIIPSqANKFLYYIAPIISFTL 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629   75 MLtIATALPVVTVGSPLPQLGdlITLLYLFAIAR---FFFAISGLDTGSPFTAIGASREAMLGVLVEPMLLLGLWVAAQV 151
Cdd:MTH00029  89 AI-LAWAIVTMDQGVFLSDLD--VGVLYFLAISSlsvYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILC 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629  152 AGSTNISNITdtVYHWPLSQSIPLVLALCACAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGFGVMKWG----ISLK 227
Cdd:MTH00029 166 VGSLNISEIV--ISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAeysnIILM 243
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629  228 QLVVLQMFVGVFIP-----WGQMETFTAGGLLLALVIAIVKLVVGVLVIALF---ENSMARLRLDITPRITWAGFGFAFL 299
Cdd:MTH00029 244 SCMMTIFFLGGWLSpldgiPTPPEAFSIFEQIASSKSSFWFFTKSSIFILFFiwsRASFPRIRYDQLMKLLWKTYLPLSL 323

                 ....*...
gi 16130629  300 AFVSLLAA 307
Cdd:MTH00029 324 GLVILTAG 331
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
1-294 8.15e-05

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 43.43  E-value: 8.15e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629    1 MSVLYPLIQAL-----VLFAVApLLSGITRVARARLHNRRGP------GVLQEYRDIIKLLGRQSVGP-DASGWVFRLTP 68
Cdd:MTH00040   1 MSVILFLINLLsfivpVLLAVA-FLTLVERKVLGYMQFRKGPnvvgpyGLLQPFADGLKLFIKETLKPsNASPYLFFFSP 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629   69 YVMVGVMLTIATALPVVTVGSPLpQLgDLITLLYLFAIARFFFAISGLDTGSPFTAIGASR--------EAMLGVLVEPM 140
Cdd:MTH00040  80 VLFLFLALLLWSLIPVPTPTLNV-NL-SLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRavaqtisyEISLGLILLSL 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629  141 LLLglwvaaqvAGSTNISNITDTVYH-WPLSQSIPLVLALcacAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGFGV 219
Cdd:MTH00040 158 VIF--------SGSFSLSSISNSQNGsWLLFPCLPLFYIW---FISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFAL 226
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16130629  220 MKWG----ISLKQLVVLQMFVGVFIPWGqmETFtagglLLALVIAIVKLVVGVLVIALFENSMARLRLDITPRITWAGF 294
Cdd:MTH00040 227 FFIAeyanIIFMNLLSVILFLGGGSPFN--EIF-----PINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNY 298
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
12-217 3.15e-04

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 41.92  E-value: 3.15e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629   12 VLFAVApLLSGITRVARARLHNRRGP------GVLQEYRDIIKLLGRQSVGPDASGWV-FRLTPYVMVGVMLTIATALPV 84
Cdd:MTH00071  18 VLLAVA-FLTLVERKVLGYMQLRKGPnivgpmGLLQPIADGLKLFIKEPIRPSTSSQIlFILMPTMALTLALIIWTPLPM 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629   85 vtvgsPLPQLGDLITLLYLFAIARF-FFAI--SGLDTGSPFTAIGASREAMLGVLVEPMLLLGLWVAAQVAGSTNISNIT 161
Cdd:MTH00071  97 -----PNNLSNLNLGILFILALSSLaVYSIlgSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGFSLMNFN 171
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 16130629  162 DTVYH-WPLSQSIPLVLALcacAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGF 217
Cdd:MTH00071 172 TTQEFmWLIIPAWPMAAMW---FISTLAETNRAPFDLTEGESELVSGFNVEYAGGPF 225
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
34-305 3.83e-04

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 41.56  E-value: 3.83e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629   34 RRGP------GVLQEYRDIIKLLGRQSVGPDASGWvfrlTPYVMVGVMLTIaTALPVVTVGSPLPQLGDLITLLYLF--- 104
Cdd:MTH00225  35 RKGPnkvglmGLPQPFADALKLFTKEQTKPQLSNK----LPYYIAPILSLI-LSLILWSLYPSMFSIYSFKFGILFFlci 109
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629  105 -AIARFFFAISGLDTGSPFTAIGASREAMLGVLVEPMLLLGLWVAAQVAGSTNISNI-TDTVYHWPLSQSIPLVLALCAC 182
Cdd:MTH00225 110 sSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLFDFsYNQKYFWFMFVLFPLFFCWMIS 189
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629  183 AFAtfiEMGKLPFDLAEAEQELQEGPLSEYSGSGFGVMkWGISLKQLVVLQMFVGVFipwgqmetFTAGGLLLALVIAIV 262
Cdd:MTH00225 190 MLA---ETNRAPFDFAEGESELVSGFNIEYSSGGFALI-FMAEYGSILFMSMLTSIL--------FFGGFFVTIDLFLIL 257
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 16130629  263 KLVVGVLVIALFENSMARLRLDITPRITWAGFGFAFLAFVSLL 305
Cdd:MTH00225 258 KIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMV 300
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
12-217 9.54e-04

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 40.38  E-value: 9.54e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629   12 VLFAVApLLSGITRVARARLHNRRGP------GVLQEYRDIIKLLGRQSVGPDASG-WVFRLTPYVMVGVMLTIATALPV 84
Cdd:MTH00104  13 ILLAVA-FLTLVERKVLGYMQLRKGPnivgpyGLLQPFADAMKLFTKEPLRPLTSStTMFIIAPILALTLALTMWIPLPM 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629   85 vtvgsPLPQLGDLITLLYLFAIARF-FFAI--SGLDTGSPFTAIGASR--------EAMLGVLVEPMLLLglwvaaqvAG 153
Cdd:MTH00104  92 -----PYPLINMNLGVLFILAMSSLaVYSIlwSGWASNSKYALIGALRavaqtisyEVTLAIILLSVLLM--------NG 158
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16130629  154 STNISNITDTVYH-WPLSQSIPLVLALcacAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGF 217
Cdd:MTH00104 159 SFTLSTLITTQEHlWLIFPSWPLAMMW---FISTLAETNRAPFDLTEGESELVSGFNVEYAAGPF 220
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
12-217 1.29e-03

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 39.72  E-value: 1.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629   12 VLFAVAPLLSGITRVARAR------LHNRRGP------GVLQEYRDIIKLLGRQSVGPD-ASGWVFRLTPYVMVGVMLTI 78
Cdd:MTH00216  12 ILIIIVPLLIAVAYLTLAErkvlgyMQARKGPnvvgvyGLLQPFADGVKLFTKEMVIPHhANLFVYIVAPVLSFTLALIV 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629   79 ATALPVvtvgSPLPQLGDL-ITLLYLFAIARF-FFAI--SGLDTGSPFTAIGASREAMLGVLVEPMLLLGLWVAAQVAGS 154
Cdd:MTH00216  92 WGVIPY----ERGVLISDFkIGILYILAISSIsVYAIlmSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGS 167
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16130629  155 TNISNI-----TDTVYHWPLsqsIPLVLALCACAFAtfiEMGKLPFDLAEAEQELQEGPLSEYSGSGF 217
Cdd:MTH00216 168 LSITEIvlaqnNGIWFFFPL---FPVAIMFFASALA---ETNRAPFDLTEGESELVSGYNVEYASMSF 229
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
12-217 1.44e-03

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 39.88  E-value: 1.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629   12 VLFAVApLLSGITRVARARLHNRRGP------GVLQEYRDIIKLLGRQSVGPD-ASGWVFRLTPYVMVGVMLTIATALPV 84
Cdd:MTH00111  18 ILIAVA-FLTLLERKILGYMQLRKGPnivgpfGLLQPIADGVKLFIKEPIRPStSSPILFTLTPILALLLALTIWTPLPM 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629   85 vtvgsPLPqLGDL-ITLLYLFAIARFF-FAI--SGLDTGSPFTAIGASR--------EAMLGVLVEPMLLLglwvaaqvA 152
Cdd:MTH00111  97 -----PFP-LADLnLGLLFLLAMSSMAvYSIlwSGWASNSKYALMGALRavaqtisyEVTLGIILLSLILL--------S 162
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16130629  153 GSTNISNITDTVYH-WPLSQSIPLVLALcacAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGF 217
Cdd:MTH00111 163 GGYTLQTLATTQEPlWLIFSSWPLAMMW---YISTLAETNRAPFDLTEGESELVSGFNVEYAAGPF 225
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
31-306 2.12e-03

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 39.33  E-value: 2.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629   31 LHNRRGP------GVLQEYRDIIKLLGRQSVGPDASGWVFrltpYVMVGVM-LTIATALPVVTVGSPLPQLGDL-ITLLY 102
Cdd:MTH00054  33 IQCRKGPnvvgvyGLLQPLADGLKLFTKEIIIPNHANIFI----YIMAPILsLTLAFIAWGVIPYGEGVVLSDLgIGILY 108
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629  103 LFA---IARFFFAISGLDTGSPFTAIGASREAMLGVLVEPMLLLGLWVAAQVAGSTNISNITdtvyhwpLSQS-IPLVLA 178
Cdd:MTH00054 109 LFAvssISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLTEIV-------LAQKnIWFIFP 181
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130629  179 LCACAFATFI----EMGKLPFDLAEAEQELQEGPLSEYSGSGFGVMKWG----ISLKQLVVLQMFVGVFIPWGQMETFTA 250
Cdd:MTH00054 182 LFPAAIMFFVsalaETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAeychIILMSTFGVILFLGGWLVISGPTSYFS 261
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 16130629  251 GGLLLALVIAIVklvvgVLVIALFENSMARLRLDITPRITWAGFGFAFLAFVSLLA 306
Cdd:MTH00054 262 NFVWFGIKIALI-----IFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVS 312
ndhA CHL00032
NADH dehydrogenase subunit 1
189-238 4.78e-03

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 38.39  E-value: 4.78e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 16130629  189 EMGKLPFDLAEAEQELQEGPLSEYSGSGFGVMKWGiSLKQLVVLQMFVGV 238
Cdd:CHL00032 225 ECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVA-SYLNLLVSSLFVTV 273
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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