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Conserved domains on  [gi|16130349|ref|NP_416919|]
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sulfate/thiosulfate ABC transporter inner membrane subunit CysU [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

sulfate/thiosulfate ABC transporter permease CysT( domain architecture ID 10793513)

sulfate/thiosulfate ABC transporter permease CysT is part of the ABC transporter complex CysAWTP (TC 3.A.1.6.1) involved in sulfate/thiosulfate import

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
1-277 0e+00

sulfate/thiosulfate ABC transporter permease CysT;


:

Pssm-ID: 182873  Cd Length: 277  Bit Score: 505.44  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349    1 MFAVSSRRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLAQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLL 80
Cdd:PRK10971   1 MLAVSSKRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLSQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   81 MAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQ 160
Cdd:PRK10971  81 MAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQ 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  161 PVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEF 240
Cdd:PRK10971 161 PVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEF 240

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 16130349  241 DYPAASAIASVILAASLLLLFSINTLQSRFGRRVVGH 277
Cdd:PRK10971 241 DYPAASAIASVILAASLLLLFSINTLQSRFGRRVVGH 277
 
Name Accession Description Interval E-value
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
1-277 0e+00

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 505.44  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349    1 MFAVSSRRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLAQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLL 80
Cdd:PRK10971   1 MLAVSSKRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLSQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   81 MAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQ 160
Cdd:PRK10971  81 MAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQ 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  161 PVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEF 240
Cdd:PRK10971 161 PVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEF 240

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 16130349  241 DYPAASAIASVILAASLLLLFSINTLQSRFGRRVVGH 277
Cdd:PRK10971 241 DYPAASAIASVILAASLLLLFSINTLQSRFGRRVVGH 277
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 6-272 6.41e-115

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 330.94  E-value: 6.41e-115
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   6 SRRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLAQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWIL 85
Cdd:COG0555   2 SRRVLPGFGLTLGLTLLYLSLIVLLPLAALVLKAAGLGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVL 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  86 TRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEE 165
Cdd:COG0555  82 VRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAPLGIKVAFTPLGIVLAQTFVSLPFVVRTVQPVLEE 161

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349 166 LGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFDYPAA 245
Cdd:COG0555 162 LDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNLPMKTEILPLLIYLKLEEGDYAGA 241

                       250       260
                ....*....|....*....|....*..
gi 16130349 246 SAIASVILAASLLLLFSINTLQSRFGR 272
Cdd:COG0555 242 TAIALVLLLISFLLLLLINLLQRRSRR 268
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 1-269 1.21e-112

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 325.46  E-value: 1.21e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349     1 MFAVSSRR--VLPGFTLSLGTSLLFVCLILLLPLSALVMQLAQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFG 78
Cdd:TIGR00969   1 MTALPSARfrFIKWGKLSLGIALLYVFLILILPVAALFVQAFSKGLGQFWQNATDPIAVSAYNLTLLMALIAVPLNGVFG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349    79 LLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRT 158
Cdd:TIGR00969  81 LLIAWVLTRYQFPGRKLLDALIDLPFALSPVVAGLTLALLYGSNGWLGSWLASFGIQIIFTWPGMALAMIFVSLPFVVRE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   159 VQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQ 238
Cdd:TIGR00969 161 VQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVSGNIPGKTLTLPLLIEERLE 240

                         250       260       270
                  ....*....|....*....|....*....|.
gi 16130349   239 EFDYPAASAIASVILAASLLLLFSINTLQSR 269
Cdd:TIGR00969 241 QYDYPGAYVIAAVLLLVSLVTLFLINALQAR 271
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 62-252 5.16e-27

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 103.51  E-value: 5.16e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  62 VTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFygewlakFDIKVTYTWL 141
Cdd:cd06261   3 NTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG-------WGILPGLGLP 75

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349 142 GIAVAMAFTsIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFIAGN 221
Cdd:cd06261  76 ALILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG 154

                       170       180       190
                ....*....|....*....|....*....|.
gi 16130349 222 IAWKTEVTSLMIFVRLQEFDYPAASAIASVI 252
Cdd:cd06261 155 EAPGPGTGLLLIFAILFPGDLGVAAAVALIL 185
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 61-241 4.58e-16

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 74.12  E-value: 4.58e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   61 KVTLLSAFVASIFNGVFGLLMAWiltrYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWlakfdiKVTYTW 140
Cdd:NF038017   3 RVSGTATLIAALIGIPLGALLAL----RRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGFL------GLLYTP 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  141 LGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFcKVVLPELSPALVAGVALSFTRSLGEFGAVIFIAG 220
Cdd:NF038017  73 TAMIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQAL-WTLLKEARFALLAAVLAGFGRAISEVGAVMMVGG 151

                        170       180
                 ....*....|....*....|...
gi 16130349  221 NIAWKTEV--TSLMIFVRLQEFD 241
Cdd:NF038017 152 NIRGYTRVltTAIVLETSKGNFD 174
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 76-274 9.56e-14

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 67.71  E-value: 9.56e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349    76 VFGLLMAwilTRYRFPGRTLLDALMDLPFALPTAVAGLTLaslfsvngfygeWLAKFDIKVTYTWLGIAVAMAFTSIPFV 155
Cdd:pfam00528   3 PLGIIAA---LRRGRRLDRLLRPLIDLLQALPSFVLAILL------------VVIAILSILGHGILPAIILALLGWAGYA 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   156 VRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFIAGNIAwktevTSLMIFV 235
Cdd:pfam00528  68 RLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPG-----LGLLLIE 142

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 16130349   236 RLQEFDYPAASAIASVILAASLLLLFSINTLQSRFGRRV 274
Cdd:pfam00528 143 AILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRV 181
 
Name Accession Description Interval E-value
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
1-277 0e+00

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 505.44  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349    1 MFAVSSRRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLAQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLL 80
Cdd:PRK10971   1 MLAVSSKRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLSQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   81 MAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQ 160
Cdd:PRK10971  81 MAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQ 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  161 PVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEF 240
Cdd:PRK10971 161 PVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEF 240

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 16130349  241 DYPAASAIASVILAASLLLLFSINTLQSRFGRRVVGH 277
Cdd:PRK10971 241 DYPAASAIASVILAASLLLLFSINTLQSRFGRRVVGH 277
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 6-272 6.41e-115

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 330.94  E-value: 6.41e-115
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   6 SRRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLAQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWIL 85
Cdd:COG0555   2 SRRVLPGFGLTLGLTLLYLSLIVLLPLAALVLKAAGLGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVL 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  86 TRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEE 165
Cdd:COG0555  82 VRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAPLGIKVAFTPLGIVLAQTFVSLPFVVRTVQPVLEE 161

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349 166 LGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFDYPAA 245
Cdd:COG0555 162 LDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNLPMKTEILPLLIYLKLEEGDYAGA 241

                       250       260
                ....*....|....*....|....*..
gi 16130349 246 SAIASVILAASLLLLFSINTLQSRFGR 272
Cdd:COG0555 242 TAIALVLLLISFLLLLLINLLQRRSRR 268
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 1-269 1.21e-112

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 325.46  E-value: 1.21e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349     1 MFAVSSRR--VLPGFTLSLGTSLLFVCLILLLPLSALVMQLAQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFG 78
Cdd:TIGR00969   1 MTALPSARfrFIKWGKLSLGIALLYVFLILILPVAALFVQAFSKGLGQFWQNATDPIAVSAYNLTLLMALIAVPLNGVFG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349    79 LLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRT 158
Cdd:TIGR00969  81 LLIAWVLTRYQFPGRKLLDALIDLPFALSPVVAGLTLALLYGSNGWLGSWLASFGIQIIFTWPGMALAMIFVSLPFVVRE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   159 VQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQ 238
Cdd:TIGR00969 161 VQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVSGNIPGKTLTLPLLIEERLE 240

                         250       260       270
                  ....*....|....*....|....*....|.
gi 16130349   239 EFDYPAASAIASVILAASLLLLFSINTLQSR 269
Cdd:TIGR00969 241 QYDYPGAYVIAAVLLLVSLVTLFLINALQAR 271
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 9-273 1.10e-109

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 317.73  E-value: 1.10e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349     9 VLPGFTLSLGTSLLFVCLILLLPLSALVMQLAQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRY 88
Cdd:TIGR02139   1 VLPGFGLSLGVTLTYLSLIVLLPLAALFLKASQLGWAGFWQIITEPRVLAAYKLSFGTALIAALINAVFGTLLAWVLVRY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349    89 RFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGP 168
Cdd:TIGR02139  81 RFPGKRIVDALVDLPFALPTAVAGIALATLYSPNGWIGSFLAPLGIKIAFTPLGIVIALVFVSLPFVVRTVQPVLEEIEK 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   169 EYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFDYPAASAI 248
Cdd:TIGR02139 161 ELEEAAASLGASRWQTFWRVILPALLPALLTGFALAFARAVGEYGSVIFIAGNLPMKTEIAPLLIFQKLEQYDYAGATAI 240

                         250       260
                  ....*....|....*....|....*
gi 16130349   249 ASVILAASLLLLFSINTLQSRFGRR 273
Cdd:TIGR02139 241 ASVMLIISFVILLFINLLQWWALRY 265
cysT CHL00187
sulfate transport protein; Provisional
 41-240 1.29e-81

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 245.31  E-value: 1.29e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   41 QMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFS 120
Cdd:CHL00187  38 QQPWSDFLQKATEPIALSAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYG 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  121 VNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAG 200
Cdd:CHL00187 118 DNGWIGHLLSHLGIQIVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTG 197

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 16130349  201 VALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEF 240
Cdd:CHL00187 198 LALTFSRAIGEYGSIVIISSNIPFKDLVASVLIFQSLEQY 237
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 52-273 2.69e-57

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 182.94  E-value: 2.69e-57
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  52 TNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAK 131
Cdd:COG4149   1 LSPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLEE 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349 132 -FDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLG 210
Cdd:COG4149  81 lFGISLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALG 160

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16130349 211 EFGAVIFIAGNIAWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFSINTLQSRFGRR 273
Cdd:COG4149 161 EFGATLMFAGNIPGKTQTLPLAIYDAVEAGDYAAAHALSLILLAISFVVLLLLNLLNRRRRRR 223
permease_CysW TIGR02140
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ...
 45-272 8.23e-54

sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 162725  Cd Length: 261  Bit Score: 175.27  E-value: 8.23e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349    45 AQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGF 124
Cdd:TIGR02140  34 GVFFAAISDPDALSAIKLTLLVALIVVPLNTVFGVCAAWVLTRFQFPGKRLLLTIIDLPFSVSPVVAGLIFVLLYGSQGW 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   125 YGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALS 204
Cdd:TIGR02140 114 LGPWLEDLDIKIIFSLPGIVLATMFVTCPFVARELIPVMEEQGTEQEEAALTLGASWWQTFWRVTLPNIKWGLLYGVILC 193

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16130349   205 FTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFSINTLQSRFGR 272
Cdd:TIGR02140 194 NARAMGEFGAVSVVSGHIRGKTNTLPLHVELLYNEYQSYAAFAAASLLALLALVTLVLKAILERRQGR 261
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 39-249 3.86e-46

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 154.48  E-value: 3.86e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349    39 LAQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASL 118
Cdd:TIGR01581   2 IRRLGGSHILSALTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   119 FSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALV 198
Cdd:TIGR01581  82 FGRNGLLGPYLEAAGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLL 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 16130349   199 AGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFDYPAASAIA 249
Cdd:TIGR01581 162 AGLVLAWARALGEFGATLMFAGSIQGKTRTLPLAIYLNIQSDNIEAAVASA 212
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 62-269 8.42e-45

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 150.47  E-value: 8.42e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349    62 VTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWL 141
Cdd:TIGR02141   2 LSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGKLLELFGISLVFTFT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   142 GIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFIAGN 221
Cdd:TIGR02141  82 GAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFAGN 161

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 16130349   222 IAWKTEVTSLMIFVRLqEFDYPAASAIASVILAASLLLLFSINTLQSR 269
Cdd:TIGR02141 162 IPGETQTIPLAIYDAV-ESDYELAHQLSLVLLAISLIVLLLVELLNKR 208
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
48-247 4.06e-42

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 145.66  E-value: 4.06e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   48 WEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGE 127
Cdd:PRK11602  54 LQNLADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGG 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  128 WLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTR 207
Cdd:PRK11602 134 WLDEHNLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNAR 213

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 16130349  208 SLGEFGAVIFIAGNIawKTEVTSLMIFVRLQEFDYPAASA 247
Cdd:PRK11602 214 AIGEFGAVSVVSGSI--RGETLSLPLQIELLEQDYNTVGS 251
modB PRK09421
molybdate ABC transporter permease subunit;
54-238 4.68e-42

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 143.91  E-value: 4.68e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   54 PQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAK-F 132
Cdd:PRK09421   5 DPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLYEwF 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  133 DIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEF 212
Cdd:PRK09421  85 GISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEF 164

                        170       180
                 ....*....|....*....|....*.
gi 16130349  213 GAVIFIAGNIAWKTEVTSLMIFVRLQ 238
Cdd:PRK09421 165 GATITFVSNIPGETQTIPSAMYTLIQ 190
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
36-252 1.27e-39

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 144.53  E-value: 1.27e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  36 VMQLAQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTL 115
Cdd:COG1178  32 LLRAFTDGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAW 111

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349 116 ASLFSVNGFYGEWLAK------FDIkvtYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVV 189
Cdd:COG1178 112 IALFGPNGLLNTLLRAlfglepPDI---YGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVT 188

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16130349 190 LPELSPALVAGVALSFTRSLGEFGAVIFIAGNIawktEVTSLMIFVRLQ-EFDYPAASAIASVI 252
Cdd:COG1178 189 LPLLRPAIAAGALLVFLLCLADFGTPLVLGGGY----TTLTTAIYQAWLgDFDLGAAAALALVL 248
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 43-273 4.60e-39

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 137.17  E-value: 4.60e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  43 SWAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVN 122
Cdd:COG1177  46 TLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSAL 125

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349 123 GFYGewlakfdikvtyTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVA 202
Cdd:COG1177 126 GLSG------------GLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGAL 193

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16130349 203 LSFTRSLGEFGAVIFIAGNiawKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFSINTLQSRFGRR 273
Cdd:COG1177 194 LAFTLSFDEFVITLFLAGP---GVTTLPVYIYSMIRRGISPEINALSTLLILLSLLLLLLAERLRRRGERR 261
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
41-252 5.46e-32

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 123.35  E-value: 5.46e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  41 QMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLasLFS 120
Cdd:COG1178 321 NLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGL--LLL 398

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349 121 VNGFYGEWLakfdikvTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAG 200
Cdd:COG1178 399 FNRPLPLLL-------YGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAA 471

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|..
gi 16130349 201 VALSFTRSLGEFGAVIFIAGNiawKTEVTSLMIFVRLQEFDYPAASAIASVI 252
Cdd:COG1178 472 ALLVFVTSMKELSATLLLRPP---GFETLAVLIYQLASSGRYGEAAALALLL 520
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 43-251 1.36e-27

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 107.54  E-value: 1.36e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  43 SWAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVN 122
Cdd:COG1176  52 TLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRN 131

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349 123 GFYGEWLAKF-----DIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPAL 197
Cdd:COG1176 132 GLLNSLLLALglidePLRLLYTEFAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGI 211

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*
gi 16130349 198 VAGVALSFTRSLGEFGAVIFIAGNiawKTEVTSLMIFVR-LQEFDYPAASAIASV 251
Cdd:COG1176 212 IAGSLLVFIPALGAFVTPALLGGG---KVLMIGNLIYQQfLSALNWPLAAALAVV 263
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 62-252 5.16e-27

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 103.51  E-value: 5.16e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  62 VTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFygewlakFDIKVTYTWL 141
Cdd:cd06261   3 NTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG-------WGILPGLGLP 75

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349 142 GIAVAMAFTsIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFIAGN 221
Cdd:cd06261  76 ALILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG 154

                       170       180       190
                ....*....|....*....|....*....|.
gi 16130349 222 IAWKTEVTSLMIFVRLQEFDYPAASAIASVI 252
Cdd:cd06261 155 EAPGPGTGLLLIFAILFPGDLGVAAAVALIL 185
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
44-252 5.12e-19

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 84.42  E-value: 5.12e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  44 WAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRyRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVN- 122
Cdd:COG1175  62 LDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNR-KLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDy 140

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349 123 GFYGEWLAKFDIK-------VTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSP 195
Cdd:COG1175 141 GLLNALLGALGLEpinwlgdPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRP 220

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 16130349 196 ALVAGVALSFTRSLGEFGAV-IFIAGNIAWKTEVTSLMIFVR-LQEFDYPAASAIASVI 252
Cdd:COG1175 221 TILFVLVLSTIGALQVFDLVyVLTGGGPGNSTTTLVLYIYQTaFQQFDFGYASAIAVVL 279
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 42-251 1.50e-17

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 80.43  E-value: 1.50e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   42 MSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLF-S 120
Cdd:PRK15050  57 LGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAFVPFPGASLVGRFIDTFVAFPSFLITLAFTFLYgS 136

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  121 VNGFYGEWLAKFDIKVT-----YTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSP 195
Cdd:PRK15050 137 AGSVNIALQRLFGLEAPpldflYSPGGVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWP 216

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 16130349  196 ALVAGVALSFTRSLGEFGAVIFIAGniawKTEVT-SLMIFVR-LQEFDYPAASAIASV 251
Cdd:PRK15050 217 ALAAGGSLCLLLTLNEFGIVLFTGA----KDVVTlPVLIYSKaIVDFDYPTACAIAVV 270
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 61-241 4.58e-16

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 74.12  E-value: 4.58e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   61 KVTLLSAFVASIFNGVFGLLMAWiltrYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWlakfdiKVTYTW 140
Cdd:NF038017   3 RVSGTATLIAALIGIPLGALLAL----RRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGFL------GLLYTP 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  141 LGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFcKVVLPELSPALVAGVALSFTRSLGEFGAVIFIAG 220
Cdd:NF038017  73 TAMIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQAL-WTLLKEARFALLAAVLAGFGRAISEVGAVMMVGG 151

                        170       180
                 ....*....|....*....|...
gi 16130349  221 NIAWKTEV--TSLMIFVRLQEFD 241
Cdd:NF038017 152 NIRGYTRVltTAIVLETSKGNFD 174
COG4132 COG4132
ABC-type uncharacterized transport system, permease component [General function prediction ...
 41-210 2.29e-15

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443307 [Multi-domain]  Cd Length: 286  Bit Score: 74.07  E-value: 2.29e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  41 QMSWAQYWEvITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRyrFPGRTLLDALMdlPFALPTA-VAGLTLA--- 116
Cdd:COG4132  47 GFTLANYAE-LTSPFYLQAFWNSIWLSLASALIGAVIGLLLAYALRR--GGPGWLRRAVL--AFSGVASnFAGVPLAfaf 121

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349 117 -SLFSVNGFYGEWLAKFDIKVT-----YTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVL 190
Cdd:COG4132 122 iATLGRNGLVTLLLKQLGIDLYdgfnlYSFWGLILVYLYFQIPLMVLLLYPALDGLRREWREAAALLGASRWQYWRRVAL 201

                       170       180
                ....*....|....*....|
gi 16130349 191 PELSPALVAGVALSFTRSLG 210
Cdd:COG4132 202 PVLAPSLLGTFLLLFANAFG 221
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 43-209 7.43e-15

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 72.32  E-value: 7.43e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   43 SWAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVN 122
Cdd:PRK09500  42 TTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLL 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  123 ----GFYGEWLAKfdikVTYtwlgiavamaftSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALV 198
Cdd:PRK09500 122 giqlGFWSLLFAH----ITF------------CLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVA 185

                        170
                 ....*....|.
gi 16130349  199 AGVALSFTRSL 209
Cdd:PRK09500 186 AGWLLSFTLSL 196
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 43-251 2.55e-14

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 71.28  E-value: 2.55e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  43 SWAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVN 122
Cdd:COG0395  59 TLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQL 138

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349 123 GFYGewlakfdikvtyTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVA 202
Cdd:COG0395 139 GLLN------------TYWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAI 206

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|...
gi 16130349 203 LSFTRSLGEF-GAVIFIAGNiAWKTEVTSLMIFVRLQEFDYP---AASAIASV 251
Cdd:COG0395 207 FTFIGAWNDFlWPLILLTSP-DLRTLPVGLASFQGQYGTDWGllmAAAVIATL 258
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 76-274 9.56e-14

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 67.71  E-value: 9.56e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349    76 VFGLLMAwilTRYRFPGRTLLDALMDLPFALPTAVAGLTLaslfsvngfygeWLAKFDIKVTYTWLGIAVAMAFTSIPFV 155
Cdd:pfam00528   3 PLGIIAA---LRRGRRLDRLLRPLIDLLQALPSFVLAILL------------VVIAILSILGHGILPAIILALLGWAGYA 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   156 VRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFIAGNIAwktevTSLMIFV 235
Cdd:pfam00528  68 RLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPG-----LGLLLIE 142

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 16130349   236 RLQEFDYPAASAIASVILAASLLLLFSINTLQSRFGRRV 274
Cdd:pfam00528 143 AILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRV 181
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 49-221 1.31e-12

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 67.40  E-value: 1.31e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349    49 EVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEW 128
Cdd:TIGR03262  45 EYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGL 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   129 LAKFDIkvtYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRS 208
Cdd:TIGR03262 125 LGGFSI---YGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLV 201

                         170
                  ....*....|...
gi 16130349   209 LGEFGAVIFIAGN 221
Cdd:TIGR03262 202 ITDFGVPKVIGGD 214
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 63-223 1.66e-11

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 63.05  E-value: 1.66e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349    63 TLLSAFVASIFNGVFGLLMAWILTRYRFP-GRTLLDALMDLPFALPTAVAGL----TLASLFS--VNGFYGEWLaKFDIK 135
Cdd:TIGR02138  68 TLITSLIALLIAVPVGIGIAIFLSEIAPKrVRSVLKPVVELLAGIPSVVYGFwglfVLVPFLKphFQPFLGSNL-GLIPL 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   136 VTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAV 215
Cdd:TIGR02138 147 FGGPILTAGIVLAIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGETMAV 226


                  ....*...
gi 16130349   216 IFIAGNIA 223
Cdd:TIGR02138 227 TMVIGNVF 234
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 63-223 6.71e-11

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 61.64  E-value: 6.71e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  63 TLLSAFVASIFNGVFGLLMAWILTRY-RFPGRTLLDALMDLPFALPTAVAGLtlASLFSVNGFYGEWLAKFDIkvTYTWL 141
Cdd:COG0573  82 TLLVSLIALLIAVPLGLGIAIFLSEYaPPRLRRILKPAIELLAGIPSVVYGF--WGLFVLVPLLRDLFPWPPS--GFSLL 157

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349 142 GIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFIAGN 221
Cdd:COG0573 158 TAGIVLAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLGRALGETMAVLMVAGN 237


                ..
gi 16130349 222 IA 223
Cdd:COG0573 238 AP 239
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 63-223 8.64e-11

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 60.71  E-value: 8.64e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349    63 TLLSAFVASIFNGVFGLLMAWILTRYRFPGRTL--LDALMDLPFALPTAVAGLTLASLFSVNGFYGewlakfdikvTYTW 140
Cdd:TIGR00974  59 TLLLTLLAIVIAVPLGIGAAIYLAEYANGSRFTkiIRFAVDILAGVPSIVVGLFGYGFFVLTYLGG----------GFSL 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   141 LGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFIAG 220
Cdd:TIGR00974 129 LAGALALALLILPVIIRTTEEALKAVPKDLREASLALGATKWQTIFKVVLPAALPGILTGIILSIARAAGETAPLLFTAG 208


                  ...
gi 16130349   221 NIA 223
Cdd:TIGR00974 209 GSA 211
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 42-205 1.30e-10

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 61.39  E-value: 1.30e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   42 MSWAQYWEVItnpqvvaayKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSV 121
Cdd:PRK09433  37 WQDSYLWHVL---------RFSFWQAFLSALLSVLPAIPLARALYRRRFPGRGLLLRLCAMTLVLPVLVAVFGLLSVYGR 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  122 NGFYGEWLAKFDIKVT---YTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALV 198
Cdd:PRK09433 108 SGWLAQLLQALGLEWPfsiYGLQGILLAHVFFNLPLATRLLLQALESIPAEQRQLAAQLGMRGWQFFRLVEWPYLRRQLP 187


                 ....*..
gi 16130349  199 AGVALSF 205
Cdd:PRK09433 188 PVAALIF 194
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 63-221 1.72e-10

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 60.05  E-value: 1.72e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  63 TLLSAFVASIFNGVFGLLMAWILTRYRFPG------RTLLDALMdlpfALPTAVAGLTLASLFSVNgfygewlakfdIKV 136
Cdd:COG0581  46 TLLLVLLATLIAVPLGVLAAIYLAEYARGGrlarliRFAIDVLA----GVPSIVYGLFGYALFVLT-----------LGL 110

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349 137 TYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVI 216
Cdd:COG0581 111 GFSLLAGALALALLMLPVVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVILAIARAAGETAPLL 190


                ....*
gi 16130349 217 FIAGN 221
Cdd:COG0581 191 FTAGV 195
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 40-212 4.00e-09

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 55.93  E-value: 4.00e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  40 AQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGR-TLLDALMDLPFaLPTAVAGLTLASL 118
Cdd:COG3833  55 ENFTLENYKKLFTETPFLRWFLNSLIVAVVTAIISVFLAALAAYAFSRFRFKGRkAGLLALLLLQM-FPAFLALVALYLL 133

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349 119 FSvngfygewlakfDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALV 198
Cdd:COG3833 134 LS------------ALGLLNTLLGLILVYLGGAIPFNTWLMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILA 201

                       170
                ....*....|....
gi 16130349 199 AGVALSFTRSLGEF 212
Cdd:COG3833 202 VVALLSFIGPWNDF 215
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 67-249 6.74e-09

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 56.08  E-value: 6.74e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349    67 AFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVT---YTWLGI 143
Cdd:TIGR01253  56 AFLSALLSIFFAIFLARALFRKPFLGKKALLKLCALTFILPALVAIFGIIGIYGRQGWLATLANLFGLEWQfhiYGLQGI 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   144 AVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFIAGNIA 223
Cdd:TIGR01253 136 LIAHLFFNIPLAAQLFLQALENIPGEQRQLAAQLGLQGWHFFKFVEWPVFRQQCLPTAALIFMLCFASFATVLSLGGGPQ 215

                         170       180
                  ....*....|....*....|....*.
gi 16130349   224 WKTEVTSLMIFVrLQEFDYPAASAIA 249
Cdd:TIGR01253 216 ATTIELAIYQAI-LFDFDLAKAALFA 240
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 67-222 7.36e-09

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 55.46  E-value: 7.36e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   67 AFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAKFD-----IKVTYTWL 141
Cdd:PRK09497  72 ALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGvidtpIRIMFTES 151

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  142 GIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEF-------GA 214
Cdd:PRK09497 152 AVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFyvsdllgGA 231


                 ....*...
gi 16130349  215 VIFIAGNI 222
Cdd:PRK09497 232 KNLLIGNV 239
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 59-273 9.24e-09

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 55.84  E-value: 9.24e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349    59 AYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPG--RTLLDALMDLPFALPTAVAGLTLASLFS-----VNGFYGewlak 131
Cdd:TIGR03262 333 AYKNSLRLAATTALIGTILVFGGAYLIEKTRGFGllRGVLRFLAILPMAVPGLVLGLGYIFFFNaptnpLNGLYG----- 407

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   132 fdikvTYTWLGIAVAMAFTSIPFVvrTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGE 211
Cdd:TIGR03262 408 -----TMALLVLCTVVHFYTVSHL--TAVTALKQIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFVNSMTT 480

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16130349   212 FGAVIFIAGNiawKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFSINTLQSRFGRR 273
Cdd:TIGR03262 481 VSAVVFLYSP---DTKLASVAILNMDDAGDIAPAAAMATLIVLTSAVAKLLFALASRRLLRR 539
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 43-252 1.03e-08

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 54.86  E-value: 1.03e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   43 SWAQYW--EVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRY-RFPGRTLLDALMDLPFALPTAVAGLTLASLF 119
Cdd:PRK10592  46 GWSTRWygELFRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVMVRFgRFRGSNGFAFMITAPLVMPDVITGLSLLLLF 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  120 SVNGFYGEWLAKFDIkvtytwLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVA 199
Cdd:PRK10592 126 VALAHAIGWPADRGM------LTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIIS 199

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 16130349  200 GVALSFTRSLGEFGAVIFIAGNIAwktEVTSLMIFVRLQEFDYPAASAIASVI 252
Cdd:PRK10592 200 GWLLAFTLSLDDLVIASFVSGPGA---TTLPMLVFSSVRMGVNPEINALATLI 249
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 42-205 2.30e-08

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 53.14  E-value: 2.30e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  42 MSWAQYWevitnPQVVAAYKVTLLSAFVASIFNGVFGLLMAWIL--TRYR--FPGRTL---LDALMD----LPFA-LPTA 109
Cdd:COG2011   3 TMWSELW-----PLLLQATGETLYMVGVSTLIAVLLGLPLGVLLvlTRPGglLPNPVLyrvLGVIVNifrsIPFIiLLVA 77

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349 110 VAGLTlaslfsvngfygewlaKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVV 189
Cdd:COG2011  78 LIPLT----------------RLIVGTSIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVL 141

                       170
                ....*....|....*.
gi 16130349 190 LPELSPALVAGVALSF 205
Cdd:COG2011 142 LPEALPSLILGLTVTL 157
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 44-209 4.27e-06

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 46.68  E-value: 4.27e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  44 WAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFpGRTLLDALMDLPFALPTavagLTLASLFSVng 123
Cdd:COG0600  47 LAALVELLASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRL-LRRLLDPLLVFLRPIPP----LALAPLLIL-- 119

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349 124 fygeWLAkfdikvtYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVAL 203
Cdd:COG0600 120 ----WFG-------IGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRI 188


                ....*.
gi 16130349 204 SFTRSL 209
Cdd:COG0600 189 ALGLAW 194
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 45-215 6.02e-06

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 47.14  E-value: 6.02e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   45 AQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASlfsvnGF 124
Cdd:PRK09433 306 ASLLRVLAQPALWQALWTSLRIALAAALLAVVLTMMLLWSSRELRLRQRKLAAQALELSGMLILAMPGIVLAT-----GL 380

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  125 YgewLAKFDIKVTYTWLGIAVAM--AFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVA 202
Cdd:PRK09433 381 F---LLLRNTTDLPASALGIVILtnALMALPYALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLIELRALRRPLAQAFA 457

                        170
                 ....*....|...
gi 16130349  203 LSFTRSLGEFGAV 215
Cdd:PRK09433 458 FACALSLGDFGVI 470
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 42-252 1.49e-05

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 45.47  E-value: 1.49e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   42 MSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSV 121
Cdd:PRK10683  81 LNLGNFLQLTDDPLYFDAYLQSLQVAAISTLCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKN 160

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  122 NGFYGE---WLAKFD--IKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPA 196
Cdd:PRK10683 161 NGVLNNfllWLGVIDqpLTILHTNLAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGG 240

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16130349  197 LVAGVALSFTRSLGEFGAVIFIAGNiawktevTSLMI-FVRLQEF----DYPAASAIASVI 252
Cdd:PRK10683 241 IIAGSMLVFIPAVGEFVIPELLGGP-------DSIMIgRVLWQEFfnnrDWPVASAVAIIM 294
pstC PRK11275
phosphate ABC transporter permease PstC;
141-221 1.72e-05

phosphate ABC transporter permease PstC;


Pssm-ID: 183070  Cd Length: 319  Bit Score: 45.46  E-value: 1.72e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  141 LGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFIAG 220
Cdd:PRK11275 171 LAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAVTFIIG 250


                 .
gi 16130349  221 N 221
Cdd:PRK11275 251 N 251
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 42-220 1.55e-04

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 42.94  E-value: 1.55e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  42 MSWAQYWevitnPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTavagltLASLFsv 121
Cdd:COG4135 345 RFWQRAA-----PGLLEPLGNTLLLALASALIALVLVLACLEAEARRGRRPGRRALWLLYLPLLVPQ------IAFLF-- 411

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349 122 nGFYGEWLAkfdIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGV 201
Cdd:COG4135 412 -GLQVLLLR---LGLDGTWLAVIWAHLVFVLPYVFLSLAGPWRALDPRYAQVAASLGASPWRVFWRVKLPLLLRPILTAA 487

                       170
                ....*....|....*....
gi 16130349 202 ALSFTRSLGEFGAVIFIAG 220
Cdd:COG4135 488 AVGFAVSVAQYLPTLLIGA 506
pstA PRK11268
phosphate ABC transporter permease PstA;
140-232 3.54e-04

phosphate ABC transporter permease PstA;


Pssm-ID: 183065 [Multi-domain]  Cd Length: 295  Bit Score: 41.21  E-value: 3.54e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  140 WLGIaVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFIA 219
Cdd:PRK11268 154 WAGV-IALALLQIPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGVLLAIARIAGETAPLLFTA 232

                         90
                 ....*....|....
gi 16130349  220 -GNIAWKTEVTSLM 232
Cdd:PRK11268 233 lSNQFWSTDMMQPI 246
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 42-215 5.33e-04

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 41.06  E-value: 5.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349    42 MSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASlfsv 121
Cdd:TIGR01253 307 LNSRNLLEVLANPQLWQALGTSLRIALAAALLALTLAIALLLLSRELEALHKMKAGQFIEMAGMLILAIPGIVLAM---- 382

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   122 nGFYgeWLAKFDIKVTYTWLGIAV-AMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAG 200
Cdd:TIGR01253 383 -GFF--LLLNDRDFLNIDADGIVIfCNALMAIPFALKILEAPFHDIMARYEMLCNSLGIEGWQRFKLIELKALKAPLAQA 459

                         170
                  ....*....|....*
gi 16130349   201 VALSFTRSLGEFGAV 215
Cdd:TIGR01253 460 FAFACALSIGDFGAI 474
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 64-252 1.68e-03

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 39.06  E-value: 1.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349    64 LLSAFVASIFNGVFGLLMAWILTRY---RFPGRTLLDALMdlpfALPTAVAGLTLASLFSVNGFYGewlakfdikvtytw 140
Cdd:TIGR01097  68 ILGTVLAAVLAVPLALLAARNITPSpwlYGLARLLLNFLR----AIPELVWALIFVAAVGLGPFAG-------------- 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   141 lgiAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSF---TRSLGEFGAVif 217
Cdd:TIGR01097 130 ---VLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFLSYTLYRFeinVRAAAVLGLV-- 204

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 16130349   218 IAGNIAwktevtsLMIFVRLQEFDYPAASAIASVI 252
Cdd:TIGR01097 205 GAGGIG-------LELDTAIGLFDYDEVSAIILVI 232
malG PRK10998
maltose ABC transporter permease MalG;
67-252 2.33e-03

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 38.92  E-value: 2.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349   67 AFVASIFNGVFGLLMAWILTRYRFPGR-TLLDALmdLPFALPTAVagLTLASLFSVNGFYGEWLAkfdikvtytWLGI-- 143
Cdd:PRK10998  92 AGITAIGIVALSTTCAYAFARMRFKGKaTLLKGM--LIFQMFPAV--LSLVALYALFDRLGQYIP---------FIGLnt 158

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  144 --AVAMAFTS-IPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFIAg 220
Cdd:PRK10998 159 hgGVIFAYLGgIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLL- 237

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 16130349  221 niawkTEVTSLMIFVRLQEFDYP--------AASAIASVI 252
Cdd:PRK10998 238 -----RDVNSYTLAVGMQQYLNPqnylwgdfAAAAVLSAI 272
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 62-248 2.80e-03

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 38.14  E-value: 2.80e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349  62 VTLLSAFVASIFNGVFGLLMAWILTR-------YRFPGRTLLDALMdlpfALPTAVAGLTLASLFSVNGFYGewlakfdi 134
Cdd:COG3639  55 ETLAIALLGTLLGAVLALPLAFLAARnlapnpwVRLLARRLLNVLR----AIPELVWALIFVAAVGLGPFAG-------- 122

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130349 135 kvtytwlgiAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSF---TRS--- 208
Cdd:COG3639 123 ---------VLALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQVLPQFLSYTLYRFeinIRAatv 193

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 16130349 209 LGEFGavifiAGNIAwktevtsLMIFVRLQEFDYPAASAI 248
Cdd:COG3639 194 LGLVG-----AGGIG-------LLLNEAIRLFQYDEVAAI 221
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
128-198 3.45e-03

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 37.79  E-value: 3.45e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16130349  128 WLAKFDIKVTYTWLGIAVAMAFTSI---PFVVRTVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALV 198
Cdd:PRK10782  74 WMIPFTRVIVGTSIGLQAAIVPLTVgaaPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLV 147
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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