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Conserved domains on  [gi|16129707|ref|NP_416267|]
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AhpD-like domain-containing protein YnjA [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

carboxymuconolactone decarboxylase family protein( domain architecture ID 11450212)

carboxymuconolactone decarboxylase family protein similar to Escherichia coli protein YnjA and Bacillus subtilis protein YdfG

CATH:  1.20.1290.10
Gene Ontology:  GO:0051920
PubMed:  9495744
SCOP:  4002925

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YciW COG2128
Alkylhydroperoxidase family enzyme, contains CxxC motif [Inorganic ion transport and ...
 53-173 5.79e-35

Alkylhydroperoxidase family enzyme, contains CxxC motif [Inorganic ion transport and metabolism];


:

Pssm-ID: 441731 [Multi-domain]  Cd Length: 142  Bit Score: 119.60  E-value: 5.79e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129707  53 RKRSPLDPVVRSLVSARIAQMCLCEFCVDITSMKVAERTGSSDKLLAVADWRQSPLFSDEERLALEYAEAASVTPPTVDD 132
Cdd:COG2128  17 MAKGGLSPRERELVALRVSQINGCAYCLDAHTAIARKAGLDEERIDALRAWRESPLFDPRERAALAFAEALTRTPGGVSD 96

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 16129707 133 ALRTRLAAHFDAQALTELTALIGLQNLSARFNSAMDIPAQG 173
Cdd:COG2128  97 ADVAALRAGFSDAEIVELVLAIALFNMSNRLNNALGTPPDP 137
 
Name Accession Description Interval E-value
YciW COG2128
Alkylhydroperoxidase family enzyme, contains CxxC motif [Inorganic ion transport and ...
 53-173 5.79e-35

Alkylhydroperoxidase family enzyme, contains CxxC motif [Inorganic ion transport and metabolism];


Pssm-ID: 441731 [Multi-domain]  Cd Length: 142  Bit Score: 119.60  E-value: 5.79e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129707  53 RKRSPLDPVVRSLVSARIAQMCLCEFCVDITSMKVAERTGSSDKLLAVADWRQSPLFSDEERLALEYAEAASVTPPTVDD 132
Cdd:COG2128  17 MAKGGLSPRERELVALRVSQINGCAYCLDAHTAIARKAGLDEERIDALRAWRESPLFDPRERAALAFAEALTRTPGGVSD 96

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 16129707 133 ALRTRLAAHFDAQALTELTALIGLQNLSARFNSAMDIPAQG 173
Cdd:COG2128  97 ADVAALRAGFSDAEIVELVLAIALFNMSNRLNNALGTPPDP 137
CMD pfam02627
Carboxymuconolactone decarboxylase family; Carboxymuconolactone decarboxylase (CMD) EC:4.1.1. ...
 48-122 5.41e-06

Carboxymuconolactone decarboxylase family; Carboxymuconolactone decarboxylase (CMD) EC:4.1.1.44 is involved in protocatechuate catabolism. In some bacteria a gene fusion event leads to expression of CMD with a hydrolase involved in the same pathway. In these bifunctional proteins CMD represents the C-terminal domain, pfam00561 represents the N-terminal domain.


Pssm-ID: 460628 [Multi-domain]  Cd Length: 84  Bit Score: 42.68  E-value: 5.41e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16129707    48 VGWLERKRSPLDPVVRSLVSARIAQMCLCEFCVDITsMKVAERTG-SSDKLLAVADWRQSPLFSDEERLALEYAEA 122
Cdd:pfam02627  10 LAFGLLWDGGLDPKTRELIALAVSAANGCAYCLDAH-TRAALKAGvTEEEIAEVLAWAAAYAGGPAARAALAAAEE 84
 
Name Accession Description Interval E-value
YciW COG2128
Alkylhydroperoxidase family enzyme, contains CxxC motif [Inorganic ion transport and ...
 53-173 5.79e-35

Alkylhydroperoxidase family enzyme, contains CxxC motif [Inorganic ion transport and metabolism];


Pssm-ID: 441731 [Multi-domain]  Cd Length: 142  Bit Score: 119.60  E-value: 5.79e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129707  53 RKRSPLDPVVRSLVSARIAQMCLCEFCVDITSMKVAERTGSSDKLLAVADWRQSPLFSDEERLALEYAEAASVTPPTVDD 132
Cdd:COG2128  17 MAKGGLSPRERELVALRVSQINGCAYCLDAHTAIARKAGLDEERIDALRAWRESPLFDPRERAALAFAEALTRTPGGVSD 96

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 16129707 133 ALRTRLAAHFDAQALTELTALIGLQNLSARFNSAMDIPAQG 173
Cdd:COG2128  97 ADVAALRAGFSDAEIVELVLAIALFNMSNRLNNALGTPPDP 137
CMD pfam02627
Carboxymuconolactone decarboxylase family; Carboxymuconolactone decarboxylase (CMD) EC:4.1.1. ...
 48-122 5.41e-06

Carboxymuconolactone decarboxylase family; Carboxymuconolactone decarboxylase (CMD) EC:4.1.1.44 is involved in protocatechuate catabolism. In some bacteria a gene fusion event leads to expression of CMD with a hydrolase involved in the same pathway. In these bifunctional proteins CMD represents the C-terminal domain, pfam00561 represents the N-terminal domain.


Pssm-ID: 460628 [Multi-domain]  Cd Length: 84  Bit Score: 42.68  E-value: 5.41e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16129707    48 VGWLERKRSPLDPVVRSLVSARIAQMCLCEFCVDITsMKVAERTG-SSDKLLAVADWRQSPLFSDEERLALEYAEA 122
Cdd:pfam02627  10 LAFGLLWDGGLDPKTRELIALAVSAANGCAYCLDAH-TRAALKAGvTEEEIAEVLAWAAAYAGGPAARAALAAAEE 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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