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Concise Results
Standard Results
Full Results
putative autotransporter adhesin YcgV [Escherichia coli str. K-12 substr. MG1655]
Protein Classification
PL1_Passenger_AT domain-containing protein ( domain architecture ID 13503335 )
PL1_Passenger_AT domain-containing protein
List of domain hits
Name
Accession
Description
Interval
E-value
autotrans_barl
TIGR01414 outer membrane autotransporter barrel domain; A number of Gram-negative bacterial proteins, ...
512-955
7.58e-81
outer membrane autotransporter barrel domain; A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 273608 [Multi-domain]
Cd Length: 431
Bit Score: 268.87
E-value: 7.58e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 512 TA G T F A TL N V EN L - S GN ST F I M RA D V vgeg N G V N NKG D L L NIS G SSA G NHVLAIR N Q G S E ATTGNEVL T V V KT - TDGA A S 589
Cdd:TIGR01414 1 PG G A F N TL T V NG L y T GN GG F V M NT D L ---- G G D N SQT D R L VVN G NAS G TTGVVVN N I G G E GAQTGDGI T L V TV n GGSD A A 76
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 590 F SAS - SQ V EL G G Y L Y DVR KNGT ---- NW E L YA S GT vpeptpnpeptpap AQP P IVNPDPTPEP aptpkpttt A D AG GNYL 664
Cdd:TIGR01414 77 F TLA n GK V DA G A Y T Y TLY KNGT ednn NW Y L TS S LP -------------- DLT P PGQQLSPTYR --------- A E AG SYAA 133
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 665 N VGYL L NYV E NR TL M QRMGDLR NQSK D GN -- I W L R SY GG SLDSFASGKLS G F D MGYS G I Q F GGD KR L SDVM -- P L Y VGL Y 740
Cdd:TIGR01414 134 N ANAA L FLA E LD TL R QRMGDLR SAAR D AG ng V W A R IF GG DNHLDGDAGAA G Y D QNTT G V Q L GGD IL L AGNA dg D L H VGL M 213
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 741 I G STH A SPDYS ---- GG D G TARSDYM G M Y ASYMAQN G F Y S D L V IKA SR QK N SFHVLD S q N NG V NANGTA NG MSI SLEAG Q 816
Cdd:TIGR01414 214 A G YAK A DIKTR syky GG K G KVDGYGL G L Y GTWLQDS G A Y V D G V LQY SR FR N DVSSTG S - N GK V SGKYNS NG FTA SLEAG Y 292
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 817 R F NL S pt G Y G F Y I EPQ T QL T Y SHQNEMTM K A SNG LNIHLNHYE SL L GR ASMIL GY DITA G N - SQLNV Y V K TGAIR EF S G D 895
Cdd:TIGR01414 293 R Y NL G -- G N G W Y V EPQ A QL S Y FGVSGDDY K E SNG TRVLGGGGD SL Q GR LGLRV GY QFDL G T g RAVKP Y L K ANVLH EF K G G 370
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16129165 896 T EYLL N NSREKYS F K G NGWNN GVGV S A QYNKQHTF Y LEA DY TQ G - NLFDQK Q V N G G Y R F SF 955
Cdd:TIGR01414 371 T GVRV N GVTIRND F S G TRAEY GVGV N A KIKDNLSL Y ADV DY QK G g KKYTDN Q G N L G V R Y SF 431
PL1_Passenger_AT
cd01343 Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of ...
377-620
1.59e-39
Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of Neisseria and Haemophilus IgA1 proteases, SPATEs (serine protease autotransporters secreted by Enterobacteriaceae), Bordetella pertacins, and nonprotease autotransporters, TibA and similar AIDA-like proteins.
Pssm-ID: 238653 [Multi-domain]
Cd Length: 233
Bit Score: 146.35
E-value: 1.59e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 377 GR ITG D SLA IT GAAG A RGIYAMT --- N S QID LT SDL V I D mst PDQMAIATQHDDGYAAS r I N AS G RMLINGSV l SKGG L I 453
Cdd:cd01343 1 GR LVS D GGN IT AGDN A QLTLGGG aly G S SVT LT NGA V L D --- AGNANLSAAASYATLSG - S N IR G TVVLGAGQ - PLQA L A 75
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 454 N L DMHPGSV WTG S slsdn VN G GKLD V AM N - NSVW NV T SN SN LDT L A L SHS TVDF A sh G ST AG T F A TL N V EN LSGN S TF I M 532
Cdd:cd01343 76 E L LLGGNAA WTG A ----- IQ G LNAT V SL N l NSVW TL T GD SN VNN L T L NGG TVDF N -- G PS AG K F N TL T V NT LSGN G TF V M 148
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 533 R A D VV G egngvn NK GD L L NIS GS SA G NHV L AIR N Q G S E A T T G NEVLT V VKTTD G A A S F S - A SSQ V E LG G Y L Y DVR K N - GT 610
Cdd:cd01343 149 R T D LA G ------ GQ GD K L VVT GS AT G DFN L LVV N T G K E P T S G LNLTL V STPKG G D A E F T l A NGT V D LG A Y R Y TLV K D g NG 222
250
....*....|
gi 16129165 611 NW E L YASGTV 620
Cdd:cd01343 223 NW T L TGPKKE 232
PRK15313 super family
cl36477 intestinal colonization autotransporter adhesin MisL;
53-614
1.67e-15
intestinal colonization autotransporter adhesin MisL;
PRK15313 :Pssm-ID: 237940 [Multi-domain]
Cd Length: 955
Bit Score: 81.38
E-value: 1.67e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 53 YG TNI T I N dgdrit G DT A DPSGNLYG V MTPA G NTPGNINL GND V T VNVND A SGY ----- AK GI IIQ G K N SS ------ L T A 121
Cdd:PRK15313 81 YG NGL T L N ------ G PG A EAFEHTVT V IQNS G TGSPGVIF GND L T IRTQS A NAA nngrd VD GI RTH G A N TP dnpvfi I T G 154
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 122 N R LTVD V V GQ TSA i GIN L igdy THAD LG T G S T IKS N ddg I II G HSSTLTA T qftie N S N G I G L T I N DY ------ GTSVDL 195
Cdd:PRK15313 155 D R TRIY V D GQ DGD - GIN A ---- GYNS LG Q G W T GSA N --- I YV G DDLYIKT T ----- G S Q G R G I T A N AM rdasra KNTIVV 221
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 196 G SGSK I T T D G STGVYIGGLNGNNANG aarf TAT D L TI DVQ G Y S AM GI NVQKN S VVD LG T N S TI KT NG DN AH GLWS fgqvs 275
Cdd:PRK15313 222 G NRAH I V T T G DSSEGLRTGQSGSLIR ---- LGD D A TI ETS G A S ST GI YAASS S RTE LG N N A TI TV NG AS AH AVYA ----- 292
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 276 analtvdvtgaaangvev RGG T TTI G ADSH IS saqgggl V T S G S D A iinftgtaaqrnsifsggsyg AS AQT A T A vvnmq 355
Cdd:PRK15313 293 ------------------ TNA T VNL G ENAT IS ------- V N S A S K A --------------------- AS YSK A P A ----- 321
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 356 ntditvdrngslal GL W ALS G G R I tgd S LA ITG A AGAR G IYAMTNSQ I DLTSDLVI D M S TPDQMA I atqhd DG yaas R I N 435
Cdd:PRK15313 322 -------------- GL Y ALS R G A I --- N LA GGA A ITMA G DNSSESYA I STETGGIV D G S SGGRFV I ----- DG ---- D I R 375
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 436 A S G RMLIN G SVLSKGGL I N L D M HPG S V W T G S S L -- S DNVNG G KLD V A M NNSV WN V TS N S N L DT L A L - S HS T VD F ASHGST 512
Cdd:PRK15313 376 A A G ATAAS G TLPQQNST I K L N M TDN S R W D G A S Y it S ATAGT G VIS V Q M SDAT WN M TS S S T L TD L T L n S GA T IN F SHEDGE 455
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 513 AGTFA T L N v E NLS GN STFIMRAD V V geg N GVNNKG D L L NIS G SSA GN HVL A IR N --- Q G SEATT G N E VLT V VKTTD G aa S 589
Cdd:PRK15313 456 PWQTL T I N - E DYV GN GGKLVFNT V L --- N DDDSET D R L QVL G NTS GN TFV A VN N igg A G AQTIE G I E IVN V AGNSN G -- T 529
570 580
....*....|....*....|....*
gi 16129165 590 F SAS S QVEL G G Y L Y D V RKN G T NW E L 614
Cdd:PRK15313 530 F EKA S RIVA G A Y D Y N V VQK G K NW Y L 554
Name
Accession
Description
Interval
E-value
autotrans_barl
TIGR01414 outer membrane autotransporter barrel domain; A number of Gram-negative bacterial proteins, ...
512-955
7.58e-81
outer membrane autotransporter barrel domain; A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 273608 [Multi-domain]
Cd Length: 431
Bit Score: 268.87
E-value: 7.58e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 512 TA G T F A TL N V EN L - S GN ST F I M RA D V vgeg N G V N NKG D L L NIS G SSA G NHVLAIR N Q G S E ATTGNEVL T V V KT - TDGA A S 589
Cdd:TIGR01414 1 PG G A F N TL T V NG L y T GN GG F V M NT D L ---- G G D N SQT D R L VVN G NAS G TTGVVVN N I G G E GAQTGDGI T L V TV n GGSD A A 76
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 590 F SAS - SQ V EL G G Y L Y DVR KNGT ---- NW E L YA S GT vpeptpnpeptpap AQP P IVNPDPTPEP aptpkpttt A D AG GNYL 664
Cdd:TIGR01414 77 F TLA n GK V DA G A Y T Y TLY KNGT ednn NW Y L TS S LP -------------- DLT P PGQQLSPTYR --------- A E AG SYAA 133
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 665 N VGYL L NYV E NR TL M QRMGDLR NQSK D GN -- I W L R SY GG SLDSFASGKLS G F D MGYS G I Q F GGD KR L SDVM -- P L Y VGL Y 740
Cdd:TIGR01414 134 N ANAA L FLA E LD TL R QRMGDLR SAAR D AG ng V W A R IF GG DNHLDGDAGAA G Y D QNTT G V Q L GGD IL L AGNA dg D L H VGL M 213
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 741 I G STH A SPDYS ---- GG D G TARSDYM G M Y ASYMAQN G F Y S D L V IKA SR QK N SFHVLD S q N NG V NANGTA NG MSI SLEAG Q 816
Cdd:TIGR01414 214 A G YAK A DIKTR syky GG K G KVDGYGL G L Y GTWLQDS G A Y V D G V LQY SR FR N DVSSTG S - N GK V SGKYNS NG FTA SLEAG Y 292
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 817 R F NL S pt G Y G F Y I EPQ T QL T Y SHQNEMTM K A SNG LNIHLNHYE SL L GR ASMIL GY DITA G N - SQLNV Y V K TGAIR EF S G D 895
Cdd:TIGR01414 293 R Y NL G -- G N G W Y V EPQ A QL S Y FGVSGDDY K E SNG TRVLGGGGD SL Q GR LGLRV GY QFDL G T g RAVKP Y L K ANVLH EF K G G 370
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16129165 896 T EYLL N NSREKYS F K G NGWNN GVGV S A QYNKQHTF Y LEA DY TQ G - NLFDQK Q V N G G Y R F SF 955
Cdd:TIGR01414 371 T GVRV N GVTIRND F S G TRAEY GVGV N A KIKDNLSL Y ADV DY QK G g KKYTDN Q G N L G V R Y SF 431
AidA
COG3468 Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular ...
111-955
4.62e-40
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442691 [Multi-domain]
Cd Length: 846
Bit Score: 160.11
E-value: 4.62e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 111 IIQ G KNSSL T ANRLTVDVV G QTSAIGINLIGDYTHA d L G T G STIK S NDDGIIIGHSSTLTATQFTIENSNGIGLTINDYG 190
Cdd:COG3468 1 TAS G GGGGA T GLGGGGTGG G GGLGGTGGGNAGLGIG - N G G G GGAA S GSGAGGVAGNGGGGGGGAGGGGGGAGSGGGLAGA 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 191 T S VDL G SG S KITTD G ST G VYIG G LN G NNANGAARFTATDLTIDVQGYSAM G INVQKNSVVDL G TNSTIKTN G DN A HGLWS 270
Cdd:COG3468 80 G S GGT G GN S TGGGG G NS G TGGT G GG G GGGGSGNGGGGGGGGGGGGTGGGG G GGTGSAGGGGG G GGGGTGVG G TG A AAAGG 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 271 FGQVSANALTVDVTGAAAN G VEVR G GTTTIGAD S HISSAQ GG GLVTS G SDAIINFT G TAAQRNSIFS G GSY G ASAQTATA 350
Cdd:COG3468 160 GTGSGGGGSGGGGGAGGGG G GGAG G SGGAGSTG S GAGGGG GG SGGGG G AAGTGGGG G GGGGAGGATG G AGS G GNTGGGVG 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 351 VVNMQNTDITVDRNGSLALGLWALS GG RITGD S LAIT G AAGAR G IYAMTNSQIDLTSDLVIDMSTPDQMAIATQHDD G YA 430
Cdd:COG3468 240 GGGGSAGGTGGGGLTGGGAAGTGGG GG GTGTG S GGGG G GGANG G GSGGGGGASGTGGGGTASTGGGGGGGGGNGGGG G GG 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 431 ASRINA SG RMLIN G SVLSK GG LINLDMHPGSVW TG SS L SDNVNG G KLDVAMNN S VWNVTSNSNLDTLA ---- LSHS T VDF 506
Cdd:COG3468 320 SNAGGG SG GGGGG G GGGGG GG TTLNGAGSAGGG TG AA L AGTGGS G SGGGGGGG S GGGGGAGGGGANTG sdgv GTGL T TGG 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 507 ASHGSTA G TFATLNVENLSGNS T FIMRADVV G EG --------- NGV N NKG D L L NIS G SSA G NHVLAIR N Q G SE --- ATT G 574
Cdd:COG3468 400 TGNNGGG G VGGGGGGGLTLTGG T LTVNGNYT G NN gtlvlntvl GDD N SPT D R L VVN G NTS G TTGVRVN N A G GL gaq TVN G 479
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 575 N EV LT V VKTT DGA as F SASSQ V EL G G Y L Y DVRKN G T ----- NW E L yasgtvpeptpnpeptpapaqppivnpd PTPEPA P 649
Cdd:COG3468 480 I EV VE V NGAS DGA -- F TLGGR V VA G A Y E Y TLYQG G S ggddg NW Y L ---------------------------- RSTLTP P 529
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 650 T P KPTTTADAGGN YL NVGYLL N - YV E NR TL MQ R M G DL R N ---- Q S KDGNI WLR SY GG SLD S FA S GKLSGF D MGYS G I Q F G 724
Cdd:COG3468 530 D P PTPVYRPEVPS YL ANPAAA N g LF E LG TL HD R L G ER R Y tdtg E S DNSGA WLR VE GG HNR S RD S SGQLDY D SNRY G L Q L G 609
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 725 GD KRL -- SDVMP L Y VG LYI G STHASP D YSG ----- G D G TARSDYM G M Y ASYMAQ NGFY S D L V IKA S RQK N SFHVL D S qn N 797
Cdd:COG3468 610 GD LLQ we DGGGR L H VG VMA G YGNGDS D VRS ratgt G K G DVDGYSL G L Y GTWYGN NGFY V D G V LQY S WFD N DVSSD D L -- G 687
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 798 GV NANGTA NG M S I SLEAG QR F N L SP tgy G FYI EPQ T QL T Y SHQNEMTMKA SNG LNIHLNHYE SL L GR ASMI LGY DITAGN 877
Cdd:COG3468 688 GV TGSYDG NG Y S A SLEAG YP F K L GE --- G WSL EPQ A QL I Y QGVDFDDFTD SNG TRVSGDDGD SL Q GR LGLR LGY EFHWDD 764
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 878 - SQ L NV Y VKTGAIR EF S GD TEYLL N NSREKYSFK G NGWNN G V GV SA Q Y NK QHTF Y LEAD Y TQ G N --- LFDQKQV N G G Y R F 953
Cdd:COG3468 765 g RA L QP Y LEANWLH EF L GD NSVTV N GVSFSQDGS G TWGEL G L GV TG Q L NK NLSL Y GDVG Y QT G L dgy DSSDTSG N L G V R Y 844
..
gi 16129165 954 SF 955
Cdd:COG3468 845 SF 846
PL1_Passenger_AT
cd01343 Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of ...
377-620
1.59e-39
Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of Neisseria and Haemophilus IgA1 proteases, SPATEs (serine protease autotransporters secreted by Enterobacteriaceae), Bordetella pertacins, and nonprotease autotransporters, TibA and similar AIDA-like proteins.
Pssm-ID: 238653 [Multi-domain]
Cd Length: 233
Bit Score: 146.35
E-value: 1.59e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 377 GR ITG D SLA IT GAAG A RGIYAMT --- N S QID LT SDL V I D mst PDQMAIATQHDDGYAAS r I N AS G RMLINGSV l SKGG L I 453
Cdd:cd01343 1 GR LVS D GGN IT AGDN A QLTLGGG aly G S SVT LT NGA V L D --- AGNANLSAAASYATLSG - S N IR G TVVLGAGQ - PLQA L A 75
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 454 N L DMHPGSV WTG S slsdn VN G GKLD V AM N - NSVW NV T SN SN LDT L A L SHS TVDF A sh G ST AG T F A TL N V EN LSGN S TF I M 532
Cdd:cd01343 76 E L LLGGNAA WTG A ----- IQ G LNAT V SL N l NSVW TL T GD SN VNN L T L NGG TVDF N -- G PS AG K F N TL T V NT LSGN G TF V M 148
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 533 R A D VV G egngvn NK GD L L NIS GS SA G NHV L AIR N Q G S E A T T G NEVLT V VKTTD G A A S F S - A SSQ V E LG G Y L Y DVR K N - GT 610
Cdd:cd01343 149 R T D LA G ------ GQ GD K L VVT GS AT G DFN L LVV N T G K E P T S G LNLTL V STPKG G D A E F T l A NGT V D LG A Y R Y TLV K D g NG 222
250
....*....|
gi 16129165 611 NW E L YASGTV 620
Cdd:cd01343 223 NW T L TGPKKE 232
Pertactin
pfam03212 Pertactin;
494-616
3.90e-39
Pertactin;
Pssm-ID: 460848 [Multi-domain]
Cd Length: 121
Bit Score: 140.99
E-value: 3.90e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 494 LDT LALS HS TVDFAS HGST AG T F A TL NVEN LSG NS TF I M R ADV V gegngv NNK GD L L NI SG SSA G N HVL AI RN Q GSE ATT 573
Cdd:pfam03212 1 VAA LALS GG TVDFAS PAEP AG A F K TL TTQT LSG SG TF V M N ADV A ------ SGT GD Q L VV SG NAS G Q HVL LV RN T GSE PAS 74
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 16129165 574 GN EV LT V V K T TD G A A S F SASS --- Q V EL G G Y L Y DVRKN G - T NW E L Y A 616
Cdd:pfam03212 75 GN TK LT L V E T GG G D A A F TLGN kgg K V DA G T Y R Y RLTAD G n G NW S L T A 121
Autotransporter
smart00869 Autotransporter beta-domain; Secretion of protein products occurs by a number of different ...
701-940
7.38e-21
Autotransporter beta-domain; Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type IV pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different peptidase is used and in some cases no cleavage occurs.
Pssm-ID: 214872 [Multi-domain]
Cd Length: 268
Bit Score: 93.40
E-value: 7.38e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 701 GSL DS FA SG KLS GFD MGYS G I Q F G G D K RLSD VMP L YV G LYI G STHASP D Y SG GD G TARS D ---- YM G M YA S Y MAQ NG F Y S 776
Cdd:smart00869 8 LRQ DS SG SG GSA GFD YDSY G L Q L G A D Y RLSD NGN L SL G FAA G YGNSKV D F SG NK G SGKG D vdsy GL G L YA G Y SLG NG L Y L 87
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 777 D LVIKAS R QK N SFHVLDSQNNGVN A N G -- TAN G MSI SLEAG Q RF N L spt G Y G FYIE P QTQ L T YS HQNEMTMKA S N G ---- 850
Cdd:smart00869 88 D AQLGYG R SD N DTKRKVTLGGAGR A K G sy DGT G YGA SLEAG Y RF Y L --- G G G LTLT P FAG L A YS RVRQDGFTE S G G gafg 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 851 L NIHLNHYE SL LGRASMI L G Y DITA G - NSQ L NV Y VKTGAIRE F SG D TEYLLNN -------- SREKYSFKG N GWNN G V G V S 921
Cdd:smart00869 165 L SVDSQSLD SL SLPLGLR L E Y RLAL G d GAT L TP Y LRLAYVHD F YD D NPVVTAS llgsgasf TTSGTDLDR N AAEL G L G L S 244
250
....*....|....*....
gi 16129165 922 A QYNKQHTFY L EA D YTQ G N 940
Cdd:smart00869 245 A KLSNGLSLS L NY D GEF G G 263
PL_Passenger_AT
cd00253 Pertactin-like passenger domains (virulence factors) of autotransporter proteins of the type V ...
450-620
1.43e-19
Pertactin-like passenger domains (virulence factors) of autotransporter proteins of the type V secretion system. Autotransporters are proteins used by Gram-negative bacteria to transport proteins across their outer membranes. The C-terminal (beta) domain of autotransporters forms a pore in the outer membrane through which the N-terminal passenger domain is transported. Following transport, the passenger domain is generally cleaved by an outer membrane protease with the passenger domain either remaining in contact with the surface via a noncovalent interaction with the beta domain or cleaved to release a soluble protein. These proteins are highly diverse and perform a variety of functions that promote virulence, including catalyzing proteolysis, serving as an adhesin, mediating actin-promoted motility, or serving as a cytotoxin. Proteins in this family share similarity in the C-terminal region of the passenger domain as seen in the pertactin structure P.69, a Bordetella pertussis agglutinogen responsible for human pertussis. The P.69 protein consists of a 16-stranded parallel beta-helix with a V-shaped cross-section, and is one of the largest beta-helix known to date.
Pssm-ID: 238156 [Multi-domain]
Cd Length: 186
Bit Score: 87.42
E-value: 1.43e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 450 GG LIN L DMHPG SVW T G S slsdn VNG G KLD V AM N - NS V W NV T SN S NLD - T L AL S HS TVDF A S HGSTAG T F a T L N VEN L S GN 527
Cdd:cd00253 18 GG GGA L TLTGN SVW L G T ----- LQA G GGT V SL N s NS L W TL T GD S TVN g N L TN S GG TVDF G S ASGAFN T L - T V N GNY L G GN 91
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 528 S TF IMRA D V vgeg N G V N NKG D L L NIS G SSA G NHVL A IR N Q G S E ATTGNEVLTV V KTTD - GA A S FS ASSQ V EL G G Y L Y DVR 606
Cdd:cd00253 92 G TF VLNT D L ---- G G D N SPT D K L VVT G NAS G TTNV A VV N A G G E GASTGDGIEL V EVNG g SD A A FS LAGR V DA G A Y E Y TLY 167
170
....*....|....*...
gi 16129165 607 K N G ---- T NW E L YASGTV 620
Cdd:cd00253 168 K G G vgnn G NW Y L RSTLAP 185
PRK15313
PRK15313 intestinal colonization autotransporter adhesin MisL;
236-864
4.27e-16
intestinal colonization autotransporter adhesin MisL;
Pssm-ID: 237940 [Multi-domain]
Cd Length: 955
Bit Score: 83.31
E-value: 4.27e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 236 GY SAM G INVQKNSVVDL G TNST IKT N G DNAH G lwsfgq VS ANA LTVDVTGAAANG V EV R GGTT T I G AD S H - ISSA Q G G G L 314
Cdd:PRK15313 172 GY NSL G QGWTGSANIYV G DDLY IKT T G SQGR G ------ IT ANA MRDASRAKNTIV V GN R AHIV T T G DS S E g LRTG Q S G S L 245
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 315 VTS G S DA I I NFT G TA aqrnsif S G G S Y G AS A ------ QT AT AV VN MQNTDITVDR N GSLA LG LW A LSG gr ITGD S L A ITG 388
Cdd:PRK15313 246 IRL G D DA T I ETS G AS ------- S T G I Y A AS S srtelg NN AT IT VN GASAHAVYAT N ATVN LG EN A TIS -- VNSA S K A ASY 316
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 389 AAGAR G I YA MTNSQ I D L TSDLV I D M S --- TPDQM AI A T QHD --- DG YAAS R ------ I N A S G RMLIN G SVLSKGGL I N L D 456
Cdd:PRK15313 317 SKAPA G L YA LSRGA I N L AGGAA I T M A gdn SSESY AI S T ETG giv DG SSGG R fvidgd I R A A G ATAAS G TLPQQNST I K L N 396
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 457 M HPG S V W T G S S L -- S DNVNG G KLD V A M NNSV WN V TS N S N L DT L A L - S HS T VD F ASHGSTAGTFA T L N v E NLS GN STFIMR 533
Cdd:PRK15313 397 M TDN S R W D G A S Y it S ATAGT G VIS V Q M SDAT WN M TS S S T L TD L T L n S GA T IN F SHEDGEPWQTL T I N - E DYV GN GGKLVF 475
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 534 AD V V geg N GVNNKG D L L NIS G SSA GN HVL A IR N --- Q G SEATT G N E VLT V VKTTD G aa S F SAS S QVEL G G Y L Y D V RKN G T 610
Cdd:PRK15313 476 NT V L --- N DDDSET D R L QVL G NTS GN TFV A VN N igg A G AQTIE G I E IVN V AGNSN G -- T F EKA S RIVA G A Y D Y N V VQK G K 550
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 611 NW E L YA ------------------ SGTV P E P TPNPEPT P APAQ P P I --- V N PDP TPEPAPT P K -- PT T TA D A G ------- 660
Cdd:PRK15313 551 NW Y L TS yiepdepiipdpvdpvip DPVI P D P VDPDPVD P VIPD P V I pdp V D PDP VDPEPVD P V ip DP T IP D I G qsdtppi 630
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 661 --------- G N YL NVG Y LL N YVENRT L MQ R M G D ------ L RNQS K DGNI W L R SY G GSLD - SFA SG K L SGFDMG Y S g I Q F G 724
Cdd:PRK15313 631 tehqfrpev G S YL ANN Y AA N TLFMTR L HD R L G E tqytdm L TGEK K VTSL W M R NV G AHTR f NDG SG Q L KTRINS Y V - L Q L G 709
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 725 GD -- KRLS D VMPLY vgl Y IG STHASPDYSGGDGTAR SDY ---------- M G M Y ASYM A Q N GFY S DLVIKASRQK N S F HVL 792
Cdd:PRK15313 710 GD la QWST D GLDRW --- H IG AMAGYANSQNRTLSSV SDY hsrgqvtgys V G L Y GTWY A N N IDR S GAYVDTWMLY N W F DNK 786
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16129165 793 DSQNNGVNANGTAN G MSI S L EAG QR F N L SPTGY - GFYIE P QT Q LTYSHQNEMTMKAS NG LNIHLNHYES LL G R 864
Cdd:PRK15313 787 VMGQDQAAEKYKSK G ITA S V EAG YS F R L GESAH q SYWLQ P KA Q VVWMGVQADDNREA NG TLVKDDTAGN LL T R 859
PRK15313
PRK15313 intestinal colonization autotransporter adhesin MisL;
53-614
1.67e-15
intestinal colonization autotransporter adhesin MisL;
Pssm-ID: 237940 [Multi-domain]
Cd Length: 955
Bit Score: 81.38
E-value: 1.67e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 53 YG TNI T I N dgdrit G DT A DPSGNLYG V MTPA G NTPGNINL GND V T VNVND A SGY ----- AK GI IIQ G K N SS ------ L T A 121
Cdd:PRK15313 81 YG NGL T L N ------ G PG A EAFEHTVT V IQNS G TGSPGVIF GND L T IRTQS A NAA nngrd VD GI RTH G A N TP dnpvfi I T G 154
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 122 N R LTVD V V GQ TSA i GIN L igdy THAD LG T G S T IKS N ddg I II G HSSTLTA T qftie N S N G I G L T I N DY ------ GTSVDL 195
Cdd:PRK15313 155 D R TRIY V D GQ DGD - GIN A ---- GYNS LG Q G W T GSA N --- I YV G DDLYIKT T ----- G S Q G R G I T A N AM rdasra KNTIVV 221
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 196 G SGSK I T T D G STGVYIGGLNGNNANG aarf TAT D L TI DVQ G Y S AM GI NVQKN S VVD LG T N S TI KT NG DN AH GLWS fgqvs 275
Cdd:PRK15313 222 G NRAH I V T T G DSSEGLRTGQSGSLIR ---- LGD D A TI ETS G A S ST GI YAASS S RTE LG N N A TI TV NG AS AH AVYA ----- 292
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 276 analtvdvtgaaangvev RGG T TTI G ADSH IS saqgggl V T S G S D A iinftgtaaqrnsifsggsyg AS AQT A T A vvnmq 355
Cdd:PRK15313 293 ------------------ TNA T VNL G ENAT IS ------- V N S A S K A --------------------- AS YSK A P A ----- 321
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 356 ntditvdrngslal GL W ALS G G R I tgd S LA ITG A AGAR G IYAMTNSQ I DLTSDLVI D M S TPDQMA I atqhd DG yaas R I N 435
Cdd:PRK15313 322 -------------- GL Y ALS R G A I --- N LA GGA A ITMA G DNSSESYA I STETGGIV D G S SGGRFV I ----- DG ---- D I R 375
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 436 A S G RMLIN G SVLSKGGL I N L D M HPG S V W T G S S L -- S DNVNG G KLD V A M NNSV WN V TS N S N L DT L A L - S HS T VD F ASHGST 512
Cdd:PRK15313 376 A A G ATAAS G TLPQQNST I K L N M TDN S R W D G A S Y it S ATAGT G VIS V Q M SDAT WN M TS S S T L TD L T L n S GA T IN F SHEDGE 455
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 513 AGTFA T L N v E NLS GN STFIMRAD V V geg N GVNNKG D L L NIS G SSA GN HVL A IR N --- Q G SEATT G N E VLT V VKTTD G aa S 589
Cdd:PRK15313 456 PWQTL T I N - E DYV GN GGKLVFNT V L --- N DDDSET D R L QVL G NTS GN TFV A VN N igg A G AQTIE G I E IVN V AGNSN G -- T 529
570 580
....*....|....*....|....*
gi 16129165 590 F SAS S QVEL G G Y L Y D V RKN G T NW E L 614
Cdd:PRK15313 530 F EKA S RIVA G A Y D Y N V VQK G K NW Y L 554
FhaB
COG3210 Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
54-667
2.30e-08
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain]
Cd Length: 1698
Bit Score: 58.24
E-value: 2.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 54 G TNI TI NDGDRI TG D T ADPSGNLYGVMTPAGN T PGNINLGNDVTVNVND A SGYAKGIIIQGKNSSLTANRLTVDVVGQTS 133
Cdd:COG3210 816 G SGG TI TINTAT TG L T GTGDTTSGAGGSNTTD T TTGTTSDGASGGGTAG A NSGSLAATAASITVGSGGVATSTGTANAGT 895
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 134 AIGINLIGDYTHADLGTGS T IKSNDD G IIIGHSSTLT A TQFTIE N SNGIGLTINDYGTSVDLGSGSKITTD G STGVYIGG 213
Cdd:COG3210 896 LTNLGTTTNAASGNGAVLA T VTATGT G GGGLTGGNAA A GGTGAG N GTTALSGTQGNAGLSAASASDGAGDT G ASSAAGSS 975
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 214 LN G NN AN G A ARFTATDLTIDVQGYSAM G INVQKNSVVDLGTNSTIKTN G DNAHGLWSFGQVS A N A LTVDVT G AA A N G VEV 293
Cdd:COG3210 976 AV G TS AN S A GSTGGVIAATGILVAGNS G TTASTTGGSGAIVAGGNGVT G TTGTASATGTGTA A T A GGQNGV G VN A S G ISG 1055
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 294 RGGTTTIGADSHISSAQGGGLVTS G SD A IINFT GT AAQRNS I FS GG SY G A S AQ T A T AVVNMQNTDITVDRNGSLALGLW A 373
Cdd:COG3210 1056 GNAAALTASGTAGTTGGTAASNGG G GT A QASGA GT THTLGG I TN GG AT G T S GG T T T STGGVTASKVGGTTTVGATGTST A 1135
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 374 LSGGRIT G DSLAITGAAGAR G IYAMTNSQIDLTSDLVIDMS T PDQMAIATQHDDGYAASRINAS G RMLIN GS VLSK G GLI 453
Cdd:COG3210 1136 STEAAGA G TLTGLVAVSAVA G GASSASAGDTTAVAAATTTT T GSAINGGADSAATEGTAGTDLK G GDSTG GS TTTI G TTN 1215
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 454 NLDMHPGSVWTGSSLSDNVNGGKLDVAMNNSVWNVTSNSNLD T L A LSHSTVDF A SHGSTAGTF AT LNVENLSGN ST FIMR 533
Cdd:COG3210 1216 VTTTTTLTASDTGNTTATGGSSAGQTGSFVAAGSASGTGDAT T G A TAGAVSNG A TSTVAGNAG AT ATGSTVDIG ST SATS 1295
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 534 A DVVGEGN G VNNKGDLLNISGSSA G NHVLAIRNQGSEATTG N EVLTVVK TT DGAASFSASSQVELGGYLYDVRKNGTNWE 613
Cdd:COG3210 1296 A GGSLDTT G NTAGANGATVGTGIG G TTATGTAVAAVNSGGV N AGGGTIN TT AANTGLNGGNGATDSAAGAGSGGAAGSLA 1375
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 16129165 614 LY A SGTVPEPTPNPEPTPAPAQPPIVNPDP T PEPAPTPKPTTTADAGGNYLNVG 667
Cdd:COG3210 1376 AT A GAGTVLTGAGNNTGAEGTNAGRDGGVT T SGTGVGNNGGVSGTTVAGTTGSS 1429
Name
Accession
Description
Interval
E-value
autotrans_barl
TIGR01414 outer membrane autotransporter barrel domain; A number of Gram-negative bacterial proteins, ...
512-955
7.58e-81
outer membrane autotransporter barrel domain; A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 273608 [Multi-domain]
Cd Length: 431
Bit Score: 268.87
E-value: 7.58e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 512 TA G T F A TL N V EN L - S GN ST F I M RA D V vgeg N G V N NKG D L L NIS G SSA G NHVLAIR N Q G S E ATTGNEVL T V V KT - TDGA A S 589
Cdd:TIGR01414 1 PG G A F N TL T V NG L y T GN GG F V M NT D L ---- G G D N SQT D R L VVN G NAS G TTGVVVN N I G G E GAQTGDGI T L V TV n GGSD A A 76
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 590 F SAS - SQ V EL G G Y L Y DVR KNGT ---- NW E L YA S GT vpeptpnpeptpap AQP P IVNPDPTPEP aptpkpttt A D AG GNYL 664
Cdd:TIGR01414 77 F TLA n GK V DA G A Y T Y TLY KNGT ednn NW Y L TS S LP -------------- DLT P PGQQLSPTYR --------- A E AG SYAA 133
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 665 N VGYL L NYV E NR TL M QRMGDLR NQSK D GN -- I W L R SY GG SLDSFASGKLS G F D MGYS G I Q F GGD KR L SDVM -- P L Y VGL Y 740
Cdd:TIGR01414 134 N ANAA L FLA E LD TL R QRMGDLR SAAR D AG ng V W A R IF GG DNHLDGDAGAA G Y D QNTT G V Q L GGD IL L AGNA dg D L H VGL M 213
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 741 I G STH A SPDYS ---- GG D G TARSDYM G M Y ASYMAQN G F Y S D L V IKA SR QK N SFHVLD S q N NG V NANGTA NG MSI SLEAG Q 816
Cdd:TIGR01414 214 A G YAK A DIKTR syky GG K G KVDGYGL G L Y GTWLQDS G A Y V D G V LQY SR FR N DVSSTG S - N GK V SGKYNS NG FTA SLEAG Y 292
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 817 R F NL S pt G Y G F Y I EPQ T QL T Y SHQNEMTM K A SNG LNIHLNHYE SL L GR ASMIL GY DITA G N - SQLNV Y V K TGAIR EF S G D 895
Cdd:TIGR01414 293 R Y NL G -- G N G W Y V EPQ A QL S Y FGVSGDDY K E SNG TRVLGGGGD SL Q GR LGLRV GY QFDL G T g RAVKP Y L K ANVLH EF K G G 370
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16129165 896 T EYLL N NSREKYS F K G NGWNN GVGV S A QYNKQHTF Y LEA DY TQ G - NLFDQK Q V N G G Y R F SF 955
Cdd:TIGR01414 371 T GVRV N GVTIRND F S G TRAEY GVGV N A KIKDNLSL Y ADV DY QK G g KKYTDN Q G N L G V R Y SF 431
AidA
COG3468 Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular ...
111-955
4.62e-40
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442691 [Multi-domain]
Cd Length: 846
Bit Score: 160.11
E-value: 4.62e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 111 IIQ G KNSSL T ANRLTVDVV G QTSAIGINLIGDYTHA d L G T G STIK S NDDGIIIGHSSTLTATQFTIENSNGIGLTINDYG 190
Cdd:COG3468 1 TAS G GGGGA T GLGGGGTGG G GGLGGTGGGNAGLGIG - N G G G GGAA S GSGAGGVAGNGGGGGGGAGGGGGGAGSGGGLAGA 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 191 T S VDL G SG S KITTD G ST G VYIG G LN G NNANGAARFTATDLTIDVQGYSAM G INVQKNSVVDL G TNSTIKTN G DN A HGLWS 270
Cdd:COG3468 80 G S GGT G GN S TGGGG G NS G TGGT G GG G GGGGSGNGGGGGGGGGGGGTGGGG G GGTGSAGGGGG G GGGGTGVG G TG A AAAGG 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 271 FGQVSANALTVDVTGAAAN G VEVR G GTTTIGAD S HISSAQ GG GLVTS G SDAIINFT G TAAQRNSIFS G GSY G ASAQTATA 350
Cdd:COG3468 160 GTGSGGGGSGGGGGAGGGG G GGAG G SGGAGSTG S GAGGGG GG SGGGG G AAGTGGGG G GGGGAGGATG G AGS G GNTGGGVG 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 351 VVNMQNTDITVDRNGSLALGLWALS GG RITGD S LAIT G AAGAR G IYAMTNSQIDLTSDLVIDMSTPDQMAIATQHDD G YA 430
Cdd:COG3468 240 GGGGSAGGTGGGGLTGGGAAGTGGG GG GTGTG S GGGG G GGANG G GSGGGGGASGTGGGGTASTGGGGGGGGGNGGGG G GG 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 431 ASRINA SG RMLIN G SVLSK GG LINLDMHPGSVW TG SS L SDNVNG G KLDVAMNN S VWNVTSNSNLDTLA ---- LSHS T VDF 506
Cdd:COG3468 320 SNAGGG SG GGGGG G GGGGG GG TTLNGAGSAGGG TG AA L AGTGGS G SGGGGGGG S GGGGGAGGGGANTG sdgv GTGL T TGG 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 507 ASHGSTA G TFATLNVENLSGNS T FIMRADVV G EG --------- NGV N NKG D L L NIS G SSA G NHVLAIR N Q G SE --- ATT G 574
Cdd:COG3468 400 TGNNGGG G VGGGGGGGLTLTGG T LTVNGNYT G NN gtlvlntvl GDD N SPT D R L VVN G NTS G TTGVRVN N A G GL gaq TVN G 479
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 575 N EV LT V VKTT DGA as F SASSQ V EL G G Y L Y DVRKN G T ----- NW E L yasgtvpeptpnpeptpapaqppivnpd PTPEPA P 649
Cdd:COG3468 480 I EV VE V NGAS DGA -- F TLGGR V VA G A Y E Y TLYQG G S ggddg NW Y L ---------------------------- RSTLTP P 529
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 650 T P KPTTTADAGGN YL NVGYLL N - YV E NR TL MQ R M G DL R N ---- Q S KDGNI WLR SY GG SLD S FA S GKLSGF D MGYS G I Q F G 724
Cdd:COG3468 530 D P PTPVYRPEVPS YL ANPAAA N g LF E LG TL HD R L G ER R Y tdtg E S DNSGA WLR VE GG HNR S RD S SGQLDY D SNRY G L Q L G 609
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 725 GD KRL -- SDVMP L Y VG LYI G STHASP D YSG ----- G D G TARSDYM G M Y ASYMAQ NGFY S D L V IKA S RQK N SFHVL D S qn N 797
Cdd:COG3468 610 GD LLQ we DGGGR L H VG VMA G YGNGDS D VRS ratgt G K G DVDGYSL G L Y GTWYGN NGFY V D G V LQY S WFD N DVSSD D L -- G 687
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 798 GV NANGTA NG M S I SLEAG QR F N L SP tgy G FYI EPQ T QL T Y SHQNEMTMKA SNG LNIHLNHYE SL L GR ASMI LGY DITAGN 877
Cdd:COG3468 688 GV TGSYDG NG Y S A SLEAG YP F K L GE --- G WSL EPQ A QL I Y QGVDFDDFTD SNG TRVSGDDGD SL Q GR LGLR LGY EFHWDD 764
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 878 - SQ L NV Y VKTGAIR EF S GD TEYLL N NSREKYSFK G NGWNN G V GV SA Q Y NK QHTF Y LEAD Y TQ G N --- LFDQKQV N G G Y R F 953
Cdd:COG3468 765 g RA L QP Y LEANWLH EF L GD NSVTV N GVSFSQDGS G TWGEL G L GV TG Q L NK NLSL Y GDVG Y QT G L dgy DSSDTSG N L G V R Y 844
..
gi 16129165 954 SF 955
Cdd:COG3468 845 SF 846
PL1_Passenger_AT
cd01343 Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of ...
377-620
1.59e-39
Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of Neisseria and Haemophilus IgA1 proteases, SPATEs (serine protease autotransporters secreted by Enterobacteriaceae), Bordetella pertacins, and nonprotease autotransporters, TibA and similar AIDA-like proteins.
Pssm-ID: 238653 [Multi-domain]
Cd Length: 233
Bit Score: 146.35
E-value: 1.59e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 377 GR ITG D SLA IT GAAG A RGIYAMT --- N S QID LT SDL V I D mst PDQMAIATQHDDGYAAS r I N AS G RMLINGSV l SKGG L I 453
Cdd:cd01343 1 GR LVS D GGN IT AGDN A QLTLGGG aly G S SVT LT NGA V L D --- AGNANLSAAASYATLSG - S N IR G TVVLGAGQ - PLQA L A 75
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 454 N L DMHPGSV WTG S slsdn VN G GKLD V AM N - NSVW NV T SN SN LDT L A L SHS TVDF A sh G ST AG T F A TL N V EN LSGN S TF I M 532
Cdd:cd01343 76 E L LLGGNAA WTG A ----- IQ G LNAT V SL N l NSVW TL T GD SN VNN L T L NGG TVDF N -- G PS AG K F N TL T V NT LSGN G TF V M 148
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 533 R A D VV G egngvn NK GD L L NIS GS SA G NHV L AIR N Q G S E A T T G NEVLT V VKTTD G A A S F S - A SSQ V E LG G Y L Y DVR K N - GT 610
Cdd:cd01343 149 R T D LA G ------ GQ GD K L VVT GS AT G DFN L LVV N T G K E P T S G LNLTL V STPKG G D A E F T l A NGT V D LG A Y R Y TLV K D g NG 222
250
....*....|
gi 16129165 611 NW E L YASGTV 620
Cdd:cd01343 223 NW T L TGPKKE 232
Pertactin
pfam03212 Pertactin;
494-616
3.90e-39
Pertactin;
Pssm-ID: 460848 [Multi-domain]
Cd Length: 121
Bit Score: 140.99
E-value: 3.90e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 494 LDT LALS HS TVDFAS HGST AG T F A TL NVEN LSG NS TF I M R ADV V gegngv NNK GD L L NI SG SSA G N HVL AI RN Q GSE ATT 573
Cdd:pfam03212 1 VAA LALS GG TVDFAS PAEP AG A F K TL TTQT LSG SG TF V M N ADV A ------ SGT GD Q L VV SG NAS G Q HVL LV RN T GSE PAS 74
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 16129165 574 GN EV LT V V K T TD G A A S F SASS --- Q V EL G G Y L Y DVRKN G - T NW E L Y A 616
Cdd:pfam03212 75 GN TK LT L V E T GG G D A A F TLGN kgg K V DA G T Y R Y RLTAD G n G NW S L T A 121
Autotransporter
pfam03797 Autotransporter beta-domain; Secretion of protein products occurs by a number of different ...
694-935
1.15e-29
Autotransporter beta-domain; Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C terminus of the proteins it occurs in. The N terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.
Pssm-ID: 461054 [Multi-domain]
Cd Length: 255
Bit Score: 118.64
E-value: 1.15e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 694 I W L R SY GG SLDSFAS G KLS G F D MGYS G I Q F G G D K RL S D vm P L YV G LYI G STHASP D YS G GD G TAR SD -- YM G M Y AS Y MAQ 771
Cdd:pfam03797 1 V W A R GF GG RGKQDGD G GAA G Y D ADTG G L Q V G A D Y RL G D -- N L RL G VAF G YSRSDA D VD G RG G SGD SD sy SL G L Y GT Y YGD 78
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 772 N G F Y S D LVIKASRQK N SFH --- V L DSQNNGVNANGTA NG MSI SLEAG Q RF N L SP tgy G FYI EP QTQ L T Y SHQNEMTMKA S 848
Cdd:pfam03797 79 G G W Y L D GGLGYGWHD N DTR rsv D L GGFSETAKGDYDG NG FGA SLEAG Y RF A L GG --- G WTL EP FAG L A Y VRLRLDGFTE S 155
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 849 N G --- L NIHLNH Y E SL L GR ASMI L G Y DITA G NSQ L NV Y VKT G AIR EF SG D TEYLLN ---------- NSREKYSFKGNGWN 915
Cdd:pfam03797 156 G G aaa L SVDSQS Y D SL T GR LGLR L S Y TFDL G GGT L TP Y ARL G WRH EF GD D DPVTTA afaglsgags FTVAGADLARDSLE 235
250 260
....*....|....*....|
gi 16129165 916 N G V G V SAQ YNKQHTF Y LEA D 935
Cdd:pfam03797 236 L G A G L SAQ LSDNLSL Y ANY D 255
Autotransporter
smart00869 Autotransporter beta-domain; Secretion of protein products occurs by a number of different ...
701-940
7.38e-21
Autotransporter beta-domain; Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type IV pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different peptidase is used and in some cases no cleavage occurs.
Pssm-ID: 214872 [Multi-domain]
Cd Length: 268
Bit Score: 93.40
E-value: 7.38e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 701 GSL DS FA SG KLS GFD MGYS G I Q F G G D K RLSD VMP L YV G LYI G STHASP D Y SG GD G TARS D ---- YM G M YA S Y MAQ NG F Y S 776
Cdd:smart00869 8 LRQ DS SG SG GSA GFD YDSY G L Q L G A D Y RLSD NGN L SL G FAA G YGNSKV D F SG NK G SGKG D vdsy GL G L YA G Y SLG NG L Y L 87
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 777 D LVIKAS R QK N SFHVLDSQNNGVN A N G -- TAN G MSI SLEAG Q RF N L spt G Y G FYIE P QTQ L T YS HQNEMTMKA S N G ---- 850
Cdd:smart00869 88 D AQLGYG R SD N DTKRKVTLGGAGR A K G sy DGT G YGA SLEAG Y RF Y L --- G G G LTLT P FAG L A YS RVRQDGFTE S G G gafg 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 851 L NIHLNHYE SL LGRASMI L G Y DITA G - NSQ L NV Y VKTGAIRE F SG D TEYLLNN -------- SREKYSFKG N GWNN G V G V S 921
Cdd:smart00869 165 L SVDSQSLD SL SLPLGLR L E Y RLAL G d GAT L TP Y LRLAYVHD F YD D NPVVTAS llgsgasf TTSGTDLDR N AAEL G L G L S 244
250
....*....|....*....
gi 16129165 922 A QYNKQHTFY L EA D YTQ G N 940
Cdd:smart00869 245 A KLSNGLSLS L NY D GEF G G 263
PL_Passenger_AT
cd00253 Pertactin-like passenger domains (virulence factors) of autotransporter proteins of the type V ...
450-620
1.43e-19
Pertactin-like passenger domains (virulence factors) of autotransporter proteins of the type V secretion system. Autotransporters are proteins used by Gram-negative bacteria to transport proteins across their outer membranes. The C-terminal (beta) domain of autotransporters forms a pore in the outer membrane through which the N-terminal passenger domain is transported. Following transport, the passenger domain is generally cleaved by an outer membrane protease with the passenger domain either remaining in contact with the surface via a noncovalent interaction with the beta domain or cleaved to release a soluble protein. These proteins are highly diverse and perform a variety of functions that promote virulence, including catalyzing proteolysis, serving as an adhesin, mediating actin-promoted motility, or serving as a cytotoxin. Proteins in this family share similarity in the C-terminal region of the passenger domain as seen in the pertactin structure P.69, a Bordetella pertussis agglutinogen responsible for human pertussis. The P.69 protein consists of a 16-stranded parallel beta-helix with a V-shaped cross-section, and is one of the largest beta-helix known to date.
Pssm-ID: 238156 [Multi-domain]
Cd Length: 186
Bit Score: 87.42
E-value: 1.43e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 450 GG LIN L DMHPG SVW T G S slsdn VNG G KLD V AM N - NS V W NV T SN S NLD - T L AL S HS TVDF A S HGSTAG T F a T L N VEN L S GN 527
Cdd:cd00253 18 GG GGA L TLTGN SVW L G T ----- LQA G GGT V SL N s NS L W TL T GD S TVN g N L TN S GG TVDF G S ASGAFN T L - T V N GNY L G GN 91
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 528 S TF IMRA D V vgeg N G V N NKG D L L NIS G SSA G NHVL A IR N Q G S E ATTGNEVLTV V KTTD - GA A S FS ASSQ V EL G G Y L Y DVR 606
Cdd:cd00253 92 G TF VLNT D L ---- G G D N SPT D K L VVT G NAS G TTNV A VV N A G G E GASTGDGIEL V EVNG g SD A A FS LAGR V DA G A Y E Y TLY 167
170
....*....|....*...
gi 16129165 607 K N G ---- T NW E L YASGTV 620
Cdd:cd00253 168 K G G vgnn G NW Y L RSTLAP 185
PRK15313
PRK15313 intestinal colonization autotransporter adhesin MisL;
236-864
4.27e-16
intestinal colonization autotransporter adhesin MisL;
Pssm-ID: 237940 [Multi-domain]
Cd Length: 955
Bit Score: 83.31
E-value: 4.27e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 236 GY SAM G INVQKNSVVDL G TNST IKT N G DNAH G lwsfgq VS ANA LTVDVTGAAANG V EV R GGTT T I G AD S H - ISSA Q G G G L 314
Cdd:PRK15313 172 GY NSL G QGWTGSANIYV G DDLY IKT T G SQGR G ------ IT ANA MRDASRAKNTIV V GN R AHIV T T G DS S E g LRTG Q S G S L 245
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 315 VTS G S DA I I NFT G TA aqrnsif S G G S Y G AS A ------ QT AT AV VN MQNTDITVDR N GSLA LG LW A LSG gr ITGD S L A ITG 388
Cdd:PRK15313 246 IRL G D DA T I ETS G AS ------- S T G I Y A AS S srtelg NN AT IT VN GASAHAVYAT N ATVN LG EN A TIS -- VNSA S K A ASY 316
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 389 AAGAR G I YA MTNSQ I D L TSDLV I D M S --- TPDQM AI A T QHD --- DG YAAS R ------ I N A S G RMLIN G SVLSKGGL I N L D 456
Cdd:PRK15313 317 SKAPA G L YA LSRGA I N L AGGAA I T M A gdn SSESY AI S T ETG giv DG SSGG R fvidgd I R A A G ATAAS G TLPQQNST I K L N 396
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 457 M HPG S V W T G S S L -- S DNVNG G KLD V A M NNSV WN V TS N S N L DT L A L - S HS T VD F ASHGSTAGTFA T L N v E NLS GN STFIMR 533
Cdd:PRK15313 397 M TDN S R W D G A S Y it S ATAGT G VIS V Q M SDAT WN M TS S S T L TD L T L n S GA T IN F SHEDGEPWQTL T I N - E DYV GN GGKLVF 475
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 534 AD V V geg N GVNNKG D L L NIS G SSA GN HVL A IR N --- Q G SEATT G N E VLT V VKTTD G aa S F SAS S QVEL G G Y L Y D V RKN G T 610
Cdd:PRK15313 476 NT V L --- N DDDSET D R L QVL G NTS GN TFV A VN N igg A G AQTIE G I E IVN V AGNSN G -- T F EKA S RIVA G A Y D Y N V VQK G K 550
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 611 NW E L YA ------------------ SGTV P E P TPNPEPT P APAQ P P I --- V N PDP TPEPAPT P K -- PT T TA D A G ------- 660
Cdd:PRK15313 551 NW Y L TS yiepdepiipdpvdpvip DPVI P D P VDPDPVD P VIPD P V I pdp V D PDP VDPEPVD P V ip DP T IP D I G qsdtppi 630
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 661 --------- G N YL NVG Y LL N YVENRT L MQ R M G D ------ L RNQS K DGNI W L R SY G GSLD - SFA SG K L SGFDMG Y S g I Q F G 724
Cdd:PRK15313 631 tehqfrpev G S YL ANN Y AA N TLFMTR L HD R L G E tqytdm L TGEK K VTSL W M R NV G AHTR f NDG SG Q L KTRINS Y V - L Q L G 709
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 725 GD -- KRLS D VMPLY vgl Y IG STHASPDYSGGDGTAR SDY ---------- M G M Y ASYM A Q N GFY S DLVIKASRQK N S F HVL 792
Cdd:PRK15313 710 GD la QWST D GLDRW --- H IG AMAGYANSQNRTLSSV SDY hsrgqvtgys V G L Y GTWY A N N IDR S GAYVDTWMLY N W F DNK 786
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16129165 793 DSQNNGVNANGTAN G MSI S L EAG QR F N L SPTGY - GFYIE P QT Q LTYSHQNEMTMKAS NG LNIHLNHYES LL G R 864
Cdd:PRK15313 787 VMGQDQAAEKYKSK G ITA S V EAG YS F R L GESAH q SYWLQ P KA Q VVWMGVQADDNREA NG TLVKDDTAGN LL T R 859
PRK15313
PRK15313 intestinal colonization autotransporter adhesin MisL;
53-614
1.67e-15
intestinal colonization autotransporter adhesin MisL;
Pssm-ID: 237940 [Multi-domain]
Cd Length: 955
Bit Score: 81.38
E-value: 1.67e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 53 YG TNI T I N dgdrit G DT A DPSGNLYG V MTPA G NTPGNINL GND V T VNVND A SGY ----- AK GI IIQ G K N SS ------ L T A 121
Cdd:PRK15313 81 YG NGL T L N ------ G PG A EAFEHTVT V IQNS G TGSPGVIF GND L T IRTQS A NAA nngrd VD GI RTH G A N TP dnpvfi I T G 154
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 122 N R LTVD V V GQ TSA i GIN L igdy THAD LG T G S T IKS N ddg I II G HSSTLTA T qftie N S N G I G L T I N DY ------ GTSVDL 195
Cdd:PRK15313 155 D R TRIY V D GQ DGD - GIN A ---- GYNS LG Q G W T GSA N --- I YV G DDLYIKT T ----- G S Q G R G I T A N AM rdasra KNTIVV 221
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 196 G SGSK I T T D G STGVYIGGLNGNNANG aarf TAT D L TI DVQ G Y S AM GI NVQKN S VVD LG T N S TI KT NG DN AH GLWS fgqvs 275
Cdd:PRK15313 222 G NRAH I V T T G DSSEGLRTGQSGSLIR ---- LGD D A TI ETS G A S ST GI YAASS S RTE LG N N A TI TV NG AS AH AVYA ----- 292
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 276 analtvdvtgaaangvev RGG T TTI G ADSH IS saqgggl V T S G S D A iinftgtaaqrnsifsggsyg AS AQT A T A vvnmq 355
Cdd:PRK15313 293 ------------------ TNA T VNL G ENAT IS ------- V N S A S K A --------------------- AS YSK A P A ----- 321
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 356 ntditvdrngslal GL W ALS G G R I tgd S LA ITG A AGAR G IYAMTNSQ I DLTSDLVI D M S TPDQMA I atqhd DG yaas R I N 435
Cdd:PRK15313 322 -------------- GL Y ALS R G A I --- N LA GGA A ITMA G DNSSESYA I STETGGIV D G S SGGRFV I ----- DG ---- D I R 375
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 436 A S G RMLIN G SVLSKGGL I N L D M HPG S V W T G S S L -- S DNVNG G KLD V A M NNSV WN V TS N S N L DT L A L - S HS T VD F ASHGST 512
Cdd:PRK15313 376 A A G ATAAS G TLPQQNST I K L N M TDN S R W D G A S Y it S ATAGT G VIS V Q M SDAT WN M TS S S T L TD L T L n S GA T IN F SHEDGE 455
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 513 AGTFA T L N v E NLS GN STFIMRAD V V geg N GVNNKG D L L NIS G SSA GN HVL A IR N --- Q G SEATT G N E VLT V VKTTD G aa S 589
Cdd:PRK15313 456 PWQTL T I N - E DYV GN GGKLVFNT V L --- N DDDSET D R L QVL G NTS GN TFV A VN N igg A G AQTIE G I E IVN V AGNSN G -- T 529
570 580
....*....|....*....|....*
gi 16129165 590 F SAS S QVEL G G Y L Y D V RKN G T NW E L 614
Cdd:PRK15313 530 F EKA S RIVA G A Y D Y N V VQK G K NW Y L 554
COG4625
COG4625 Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ...
78-955
7.97e-11
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];
Pssm-ID: 443664 [Multi-domain]
Cd Length: 900
Bit Score: 66.34
E-value: 7.97e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 78 G VMTPA G NTP G NINL G NDVTVNVND A S G Y A K G IIIQ G KNSSLTANRLTVDVV G QTSAI G INLI G DYTHADLGT G STIKSN 157
Cdd:COG4625 3 G GGGGG G GGG G GGGT G GGGAGGGGG A G G G A G G GGAG G GGGGGGGGGGAGGGG G GGGTG G GGGG G GGGGGGGAG G GGGGGG 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 158 DD G III G HSSTLTATQFTIENSN G I G LTINDY G TSVDL G S G SKITTD G ST G VYIG G LN G NNAN G AARFTATDLTIDVQ G Y 237
Cdd:COG4625 83 GG G GGG G TGGVGGGGGGGGGGGG G G G GGGGGG G GGSAG G G G GGAGGA G GG G GGGA G GG G GGGG G GGAGGGGGGGAGGA G G 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 238 SAM G INVQKNSVVDL G TNSTIKTN G DNAH G LWSF G QVSANALTVDVT G AAAN G VEVR GG TTTI G ADSHISSAQ GGG LVTS 317
Cdd:COG4625 163 GGG G GGGGGGGGGGG G GGGGGGGG G GGGG G NGGG G GGGGGGGGGGGG G GGGA G GGGG GG GGGG G GGGGGGGGG GGG GGGG 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 318 G SDAIINFT G TAAQR N SIFS G GSY G ASAQTATAVVNMQNTDITVDRN G SLAL G LWALS GG RIT G DSLAIT G AA G AR G IYA 397
Cdd:COG4625 243 G GGGGAGGG G GGGGG N GGGG G AGG G GGGGGGGSGGGGGGGGGGGSGG G GGGG G GGGGG GG GGG G GGGGGG G GG G GG G GGG 322
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 398 MTNSQIDLTSDLVIDMSTPDQM A IATQHDD G Y A ASRINASGRMLIN G SVLSK GG LINLDMHP G SVWT G SSLSDNVN GG KL 477
Cdd:COG4625 323 GGGGGGGGGGGAGGGGGSGGAG A GGGGAGG G G A GGGGGGGTGGGGG G GGGGG GG SGGGGAGG G GGSG G GGGGGAGG GG GG 402
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 478 DV A MNNSVWNVTSNSNLDTLALSHSTVDFASH G STA G TFATLNVENLS G NSTFIMRADVVGEGN G VNNK G D - L L NIS G SS 556
Cdd:COG4625 403 GG A GGTGGGGAGGGGGAAGGGGGGTGAGGGGG G GGT G AGGGGATGGGG G GGGGAGGSGGGAGAG G GSGS G A g T L TLT G NN 482
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 557 AGNHVLAIRNQ G SEATTGNEV L T V VKTTDGAASFSASSQVE L G G Y ly D V RKNGTNWELYASG T VPEPTPNPEPTPAPAQP 636
Cdd:COG4625 483 TYTGTTTVNGG G NYTQSAGST L A V EVDAANSDRLVVTGTAT L N G G -- T V VVLAGGYAPGTTY T ILAVAAALDALAGNGDL 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 637 PIVNPDPTPEP A PTPKPTTTADA G GNYLNVGYL L --- NYVENRT L MQ R MGD LR ------- NQSKDGNI W LRSY G GSL D SF 706
Cdd:COG4625 561 SALYNALAALD A AAARAALDQLS G EIHASAAAA L lqa SRALRDA L SN R LRA LR gagaagd AAAEGWGV W AQGF G SWG D QD 640
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 707 AS G KLS G F D MGYS G IQF G G D K RL S D VMP L Y V G L YIGSTHASP D YS G GD G TAR S DYM G M Y AS Y MA q NGF Y S D LVIKASRQK 786
Cdd:COG4625 641 GD G GAA G Y D SSTG G LLV G A D Y RL G D NWR L G V A L GYSRSDVDV D DR G SS G DSD S YHL G L Y GG Y QF - GAL Y L D GGLGYGWND 719
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 787 NSFH --- VLDSQNNGVN A NGTANGM S IS LEAG Q RF N L S ptgy G FYIE P QTQ L T Y SHQNEMTMKASN G --- L NIHLNHYE S 860
Cdd:COG4625 720 YDTD rti AFGGLSRTAT A DYDGDTA S AF LEAG Y RF D L G ---- G LTLT P FAG L A Y VRLRTDGFTETG G aaa L SVDSQSTD S 795
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 861 L LGRASMILGYDI - TA G NSQ L NVYVKT G AIR EF SG D ---- T EYLLNNSREKYSFK G ----- NGWNN G V G V SA QYNKQHTF 930
Cdd:COG4625 796 L RSTLGLRASRTF s LG G GVT L TPSGRL G WRH EF GD D dpst T ASFAGAPGAAFTVA G aplar DALVL G A G L SA RLSDGLSL 875
890 900
....*....|....*....|....*
gi 16129165 931 Y L EA D YTQ G NLFDQKQVNG G Y R FS F 955
Cdd:COG4625 876 G L GY D GEF G SGYTDHGGSA G L R YR F 900
FhaB
COG3210 Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
54-667
2.30e-08
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain]
Cd Length: 1698
Bit Score: 58.24
E-value: 2.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 54 G TNI TI NDGDRI TG D T ADPSGNLYGVMTPAGN T PGNINLGNDVTVNVND A SGYAKGIIIQGKNSSLTANRLTVDVVGQTS 133
Cdd:COG3210 816 G SGG TI TINTAT TG L T GTGDTTSGAGGSNTTD T TTGTTSDGASGGGTAG A NSGSLAATAASITVGSGGVATSTGTANAGT 895
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 134 AIGINLIGDYTHADLGTGS T IKSNDD G IIIGHSSTLT A TQFTIE N SNGIGLTINDYGTSVDLGSGSKITTD G STGVYIGG 213
Cdd:COG3210 896 LTNLGTTTNAASGNGAVLA T VTATGT G GGGLTGGNAA A GGTGAG N GTTALSGTQGNAGLSAASASDGAGDT G ASSAAGSS 975
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 214 LN G NN AN G A ARFTATDLTIDVQGYSAM G INVQKNSVVDLGTNSTIKTN G DNAHGLWSFGQVS A N A LTVDVT G AA A N G VEV 293
Cdd:COG3210 976 AV G TS AN S A GSTGGVIAATGILVAGNS G TTASTTGGSGAIVAGGNGVT G TTGTASATGTGTA A T A GGQNGV G VN A S G ISG 1055
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 294 RGGTTTIGADSHISSAQGGGLVTS G SD A IINFT GT AAQRNS I FS GG SY G A S AQ T A T AVVNMQNTDITVDRNGSLALGLW A 373
Cdd:COG3210 1056 GNAAALTASGTAGTTGGTAASNGG G GT A QASGA GT THTLGG I TN GG AT G T S GG T T T STGGVTASKVGGTTTVGATGTST A 1135
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 374 LSGGRIT G DSLAITGAAGAR G IYAMTNSQIDLTSDLVIDMS T PDQMAIATQHDDGYAASRINAS G RMLIN GS VLSK G GLI 453
Cdd:COG3210 1136 STEAAGA G TLTGLVAVSAVA G GASSASAGDTTAVAAATTTT T GSAINGGADSAATEGTAGTDLK G GDSTG GS TTTI G TTN 1215
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 454 NLDMHPGSVWTGSSLSDNVNGGKLDVAMNNSVWNVTSNSNLD T L A LSHSTVDF A SHGSTAGTF AT LNVENLSGN ST FIMR 533
Cdd:COG3210 1216 VTTTTTLTASDTGNTTATGGSSAGQTGSFVAAGSASGTGDAT T G A TAGAVSNG A TSTVAGNAG AT ATGSTVDIG ST SATS 1295
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 534 A DVVGEGN G VNNKGDLLNISGSSA G NHVLAIRNQGSEATTG N EVLTVVK TT DGAASFSASSQVELGGYLYDVRKNGTNWE 613
Cdd:COG3210 1296 A GGSLDTT G NTAGANGATVGTGIG G TTATGTAVAAVNSGGV N AGGGTIN TT AANTGLNGGNGATDSAAGAGSGGAAGSLA 1375
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 16129165 614 LY A SGTVPEPTPNPEPTPAPAQPPIVNPDP T PEPAPTPKPTTTADAGGNYLNVG 667
Cdd:COG3210 1376 AT A GAGTVLTGAGNNTGAEGTNAGRDGGVT T SGTGVGNNGGVSGTTVAGTTGSS 1429
FhaB
COG3210 Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
31-580
1.10e-07
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain]
Cd Length: 1698
Bit Score: 56.31
E-value: 1.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 31 GAIGLNAIIFSPLLIAAD TG SQYGTNITIND G DRIT G DTADPSGNLYGVMTPA G NTP G NINLGNDV T VN V ND A SGY A KG I 110
Cdd:COG3210 162 TNTNNSSSGTNIGNSIPT TG GSLNVVAANPT G VTGV G GALINATAGVLANAGG G TAG G VASANSTL T GG V VA A GTG A GV I 241
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 111 IIQ G KNS S LTANRLTVDVV G QTSAIGINLIGDY T HADLGTGSTIKSNDDGIIIGHSSTLTATQFTIENSNGI G L T INDYG 190
Cdd:COG3210 242 STG G TDI S SLSVAAGAGTG G AGGTGNAGNTTIG T TVTGTNATGSNTAGASSGDTTTNGTSSVTGAGGTGVLG G G T AAGIT 321
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 191 T SVDL G SGSKIT ---- TD G STG V YI G GLNG N NAN G AARFTATDL T IDVQ G YSAM G INVQKNS V VDLGTNSTIKTNGDNAH 266
Cdd:COG3210 322 T TNTV G GNGDGN ntta NS G AGL V SG G TGGN N GTT G TGAGSGLTG T GNGG G LTTA G AGTVAST V GTATASTGNASSTTVLG 401
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 267 GLWSFGQVSANALTVDVTG A A A N G VEVR GG TTT I GADSHISSAQG GGL VT SG SDAIINFT G TAAQRNSIFSGG S Y G ASAQ 346
Cdd:COG3210 402 SGSLATGNTGTTIAGNGGS A N A G G FTTT GG VLG I TGNGTVTGGTI GGL TG SG TTNGAGLS G NTDVSGTGTVTN S A G NTTS 481
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 347 TA T AVVNMQN T DI T VDRNGSL A L G LWALSGGRI TG DSLAIT G AAG A RGIYAMTNSQIDLT S D L VIDM S TPDQMAI A TQHD 426
Cdd:COG3210 482 AT T LAGGGIG T VT T NATISNN A G G DANGIATGL TG ITAGGG G GGN A TSGGTGGDGTTLSG S G L TTTV S GGASGTT A ASGS 561
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 427 DGYAASRIN A SGRMLI N GSVLSKGGLINLDMHPG S VW T GS S LSDNVN G GKLDVAMNNSVWNVTS N SNLDTLA L SH S T V DF 506
Cdd:COG3210 562 NTANTLGVL A ATGGTS N ATTAGNSTSATGGTGTN S GG T VL S IGTGSA G ATGTITLGAGTSGAGA N ATGGGAG L TG S A V GA 641
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16129165 507 A SH G STA GT FA T LNVENLSGNSTFIMRADVV G EGNG V NNKGDLLNISGSSAGNHVLAIR N Q G SEA T TGNEVL TV 580
Cdd:COG3210 642 A LS G TGS GT TG T ASANGSNTTGVNTAGGTGG G TTGT V TSGATGGTTGTTLNAATGGTLN N A G NTL T ISTGSI TV 715
FhaB
COG3210 Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
54-600
1.64e-06
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain]
Cd Length: 1698
Bit Score: 52.46
E-value: 1.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 54 G TNI T I N D G DR I - T G DTADP S GN L YGVM T PA G N T PG - NINL GN DVTVNVN D AS G YAKG I I I QGKNSSLT A NRLTVD V V G Q 131
Cdd:COG3210 738 G ATL T L N A G VT I t S G NAGTL S IG L TANT T AS G T T LT l ANAN GN TSAGATL D NA G AEIS I D I TADGTITA A GTTAIN V T G S 817
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 132 TSA ig I NLIGDY T HADLGTGS T IKSNDDGIIIGHSS T LTATQFTIENSNGIGLTINDYGT S VDL GSG SKI T TD G STGVYI 211
Cdd:COG3210 818 GGT -- I TINTAT T GLTGTGDT T SGAGGSNTTDTTTG T TSDGASGGGTAGANSGSLAATAA S ITV GSG GVA T ST G TANAGT 895
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 212 GGLN G NNA N G A ARFT A TDL T IDVQ G YSAM G INVQKNSVVDL G TNSTIKTNGDNAHGLWSFGQVSANALTVDVTGA AA NGV 291
Cdd:COG3210 896 LTNL G TTT N A A SGNG A VLA T VTAT G TGGG G LTGGNAAAGGT G AGNGTTALSGTQGNAGLSAASASDGAGDTGASS AA GSS 975
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 292 E V RGGTTTI G ADSHISS A Q G GGLVTSGSDAIINFT G TA A QRNSIFSGGSYGAS A QTATAVVNMQNTDITVDRNGSLALGL 371
Cdd:COG3210 976 A V GTSANSA G STGGVIA A T G ILVAGNSGTTASTTG G SG A IVAGGNGVTGTTGT A SATGTGTAATAGGQNGVGVNASGISG 1055
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 372 WALSGGRIT G DSLAIT G A A GAR G IYAMTNSQIDL T SDLVIDMSTPDQMAIATQHDDGYAASRINAS G RMLIN G SVLSKGG 451
Cdd:COG3210 1056 GNAAALTAS G TAGTTG G T A ASN G GGGTAQASGAG T THTLGGITNGGATGTSGGTTTSTGGVTASKV G GTTTV G ATGTSTA 1135
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 452 LINLDMHPGSVWTGSSLSDNVNGGKLDVAMNNS V WNV T SNSNLDTLALSHSTVDFASHGS T AGTFATLNVENLSGNS T FI 531
Cdd:COG3210 1136 STEAAGAGTLTGLVAVSAVAGGASSASAGDTTA V AAA T TTTTGSAINGGADSAATEGTAG T DLKGGDSTGGSTTTIG T TN 1215
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16129165 532 MRADVVGEGNGVN N KGDLLNI S GSSA G NH V L A IRNQ G SEAT T GNEVLTV V KTTDGAASFSASSQVEL G G 600
Cdd:COG3210 1216 VTTTTTLTASDTG N TTATGGS S AGQT G SF V A A GSAS G TGDA T TGATAGA V SNGATSTVAGNAGATAT G S 1284
FhaB
COG3210 Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
31-667
1.58e-05
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain]
Cd Length: 1698
Bit Score: 48.99
E-value: 1.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 31 G AI G LNAIIFSPLLIAADTGSQY GT NITIND G DRITGD T ADPS G NLYGVMTPAGN T PG N INLGNDVTVNVNDASGYAKGI 110
Cdd:COG3210 416 G NG G SANAGGFTTTGGVLGITGN GT VTGGTI G GLTGSG T TNGA G LSGNTDVSGTG T VT N SAGNTTSATTLAGGGIGTVTT 495
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 111 IIQGK N SSLTANRLTVDVVGQTS A I G INLIGDYTHADL G T G S T IKSNDDGIIIGHSSTL T ATQFTIENS N GI G LTINDY G 190
Cdd:COG3210 496 NATIS N NAGGDANGIATGLTGIT A G G GGGGNATSGGTG G D G T T LSGSGLTTTVSGGASG T TAASGSNTA N TL G VLAATG G 575
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 191 TS VDLGS G SKITTD G S TG VYI GG LNGNNAN G A A RF T A T DLTIDVQGYSAMGINVQKNSVVDLGTNSTIKTN G DNAH G LW S 270
Cdd:COG3210 576 TS NATTA G NSTSAT G G TG TNS GG TVLSIGT G S A GA T G T ITLGAGTSGAGANATGGGAGLTGSAVGAALSGT G SGTT G TA S 655
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 271 FGQVSANALTVDVTGAAANGVE V RG G T T TIGADSHISS A Q GG G L VTS G SDAI I NFTGTAA qrn SIFS G GSYG A SAQ T A T A 350
Cdd:COG3210 656 ANGSNTTGVNTAGGTGGGTTGT V TS G A T GGTTGTTLNA A T GG T L NNA G NTLT I STGSITV --- TGQI G ALAN A NGD T V T F 732
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 351 VVNMQNTDI T VDRNGSLAL G lwal SG G RITGDSL A I T G A A G ARGIY A MT N SQIDLTSD L VIDMSTPDQMAI A TQHDDGYA 430
Cdd:COG3210 733 GNLGTGATL T LNAGVTITS G ---- NA G TLSIGLT A N T T A S G TTLTL A NA N GNTSAGAT L DNAGAEISIDIT A DGTITAAG 808
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 431 ASR IN AS G ------- RMLIN G SVLSKGGLINLDMHPGSVW T GSSL SD NVN GG KLDV A MNN S VWNVTSNSNLDTLALSH ST 503
Cdd:COG3210 809 TTA IN VT G sggtiti NTATT G LTGTGDTTSGAGGSNTTDT T TGTT SD GAS GG GTAG A NSG S LAATAASITVGSGGVAT ST 888
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 504 VDFASHGS T AGTFA T LNVENLSGNSTFIMRADVV G E G NGVN N KGDLLNIS G SSAGNHVLAIR N Q G SE A TTGNEVLTVVKT 583
Cdd:COG3210 889 GTANAGTL T NLGTT T NAASGNGAVLATVTATGTG G G G LTGG N AAAGGTGA G NGTTALSGTQG N A G LS A ASASDGAGDTGA 968
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 584 TDG A A S FSASSQVELG G YLYD V RKNGTNWELYA SGT VPEP T PNPEPTP A PAQPPIVNPDPTPEPAPTPKP T TTADA G GNY 663
Cdd:COG3210 969 SSA A G S SAVGTSANSA G STGG V IAATGILVAGN SGT TAST T GGSGAIV A GGNGVTGTTGTASATGTGTAA T AGGQN G VGV 1048
....
gi 16129165 664 LNV G 667
Cdd:COG3210 1049 NAS G 1052
FhaB
COG3210 Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
31-826
2.84e-05
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain]
Cd Length: 1698
Bit Score: 48.22
E-value: 2.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 31 G AIGLNAIIFSPLLIAAD T GSQY GT NITINDGDRIT G DTADPSGNLYGVMTPAGNTPG N INL G NDVTVNVNDASGYAKGI 110
Cdd:COG3210 568 G VLAATGGTSNATTAGNS T SATG GT GTNSGGTVLSI G TGSAGATGTITLGAGTSGAGA N ATG G GAGLTGSAVGAALSGTG 647
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 111 IIQGKNS S LTANRL T VDVVGQTSAI G INLIGDYTHADLG TG S T IKSNDD G IIIGHSS TLT ATQFT I ENSNG IG LTI N DY G 190
Cdd:COG3210 648 SGTTGTA S ANGSNT T GVNTAGGTGG G TTGTVTSGATGGT TG T T LNAATG G TLNNAGN TLT ISTGS I TVTGQ IG ALA N AN G 727
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 191 TS V DL G SGSK - I T TDGST GV Y I GGL N GNNANGAARFTA T DLTIDVQGYS A M G INVQKNSVVDL G TNST I KTNG D NAH glw 269
Cdd:COG3210 728 DT V TF G NLGT g A T LTLNA GV T I TSG N AGTLSIGLTANT T ASGTTLTLAN A N G NTSAGATLDNA G AEIS I DITA D GTI --- 804
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 270 sfgq VS A NALTVD VTG AAAN g VEVRGG TT TIGADSHIS S AQ GG GLV T SGSDAIINFTGTAAQRNSIF SG GSYGAS A QTAT 349
Cdd:COG3210 805 ---- TA A GTTAIN VTG SGGT - ITINTA TT GLTGTGDTT S GA GG SNT T DTTTGTTSDGASGGGTAGAN SG SLAATA A SITV 879
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 350 AVVNMQNTDI T VDRNGSLA LG LWALSGGRITGDSLAI T GAAGAR G IYAMT N SQIDL T SDLVIDMSTPDQMAI A TQHDDGY 429
Cdd:COG3210 880 GSGGVATSTG T ANAGTLTN LG TTTNAASGNGAVLATV T ATGTGG G GLTGG N AAAGG T GAGNGTTALSGTQGN A GLSAASA 959
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 430 AASRINASGRMLING S VLSKGGLINLDMHPGSVW TG SSLSD N VNGGKLDVAMNNSVWNVTSNSNLD T LAL S HSTVDF A SH 509
Cdd:COG3210 960 SDGAGDTGASSAAGS S AVGTSANSAGSTGGVIAA TG ILVAG N SGTTASTTGGSGAIVAGGNGVTGT T GTA S ATGTGT A AT 1039
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 510 GSTAGTFATLNVENLS GN STFIMRADVV G EGN G VNNKGDLLNISGS S AGNHVLAIRNQGSEAT TG NEVL T VVK T TDGA AS 589
Cdd:COG3210 1040 AGGQNGVGVNASGISG GN AAALTASGTA G TTG G TAASNGGGGTAQA S GAGTTHTLGGITNGGA TG TSGG T TTS T GGVT AS 1119
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 590 FSASSQVELGGYLYDVRKNGTNWELYASGTVPEPTPNPEPTPAPAQPPI V NPDP T PEPAPTPKPTTTAD A GGNYLNVGYL 669
Cdd:COG3210 1120 KVGGTTTVGATGTSTASTEAAGAGTLTGLVAVSAVAGGASSASAGDTTA V AAAT T TTTGSAINGGADSA A TEGTAGTDLK 1199
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 670 LNYVENRTLMQRMGDLRNQSKDGNIWLRSYGGSLDSFAS G KLSG F DMGY S GIQF G GDKRLSDVMPLYV G LYIGSTHASPD 749
Cdd:COG3210 1200 GGDSTGGSTTTIGTTNVTTTTTLTASDTGNTTATGGSSA G QTGS F VAAG S ASGT G DATTGATAGAVSN G ATSTVAGNAGA 1279
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16129165 750 YSG G DGTARSDYMGMY A SYMAQNGFYSDLVIK A SRQKNSFHVLDSQNNGVNA N GTANGMSISLEAGQRF N LSPT G YG 826
Cdd:COG3210 1280 TAT G STVDIGSTSATS A GGSLDTTGNTAGANG A TVGTGIGGTTATGTAVAAV N SGGVNAGGGTINTTAA N TGLN G GN 1356
PL2_Passenger_AT
cd01344 Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of ...
441-614
2.31e-04
Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of the nonprotease autotransporters, Ag43, AIDA-1 and IcsA, as well as, the less characterized ShdA, MisL, and BapA autotransporters.
Pssm-ID: 238654 [Multi-domain]
Cd Length: 188
Bit Score: 43.06
E-value: 2.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 441 LINGSVLSK GG LIN L DMHPGSVW T GSS L SDNVNG G KLDVAMNN -- S V WN V T SN S N L DTLA L SHS - T V D FASHGSTA GT fa 517
Cdd:cd01344 3 ITGNGGWKL GG DLT L GGGALTLT T SLT L TGTLLT G GAGTLTLD st S T WN I T GT S T L NVGN L TNA g T I D LGNGSPAG GT -- 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129165 518 TLNVE N LS GN S - T FIMRADV vgeg NGVNNKG D L L N I S G SSA G NHVL A IR N Q - GS E ATTGN -- EV LT V VK T TDGA A s FS AS 593
Cdd:cd01344 81 LTITG N YT GN G g T LRLNTVL ---- GDDDSPT D R L V I D G DAS G TTRV A VN N A g GS G ATTGN gi EV VE V GG T SSNG A - FS LA 155
170 180
....*....|....*....|....*.
gi 16129165 594 SQ V EL G G Y L Y DVRKN G T ----- NW E L 614
Cdd:cd01344 156 GR V VA G A Y E Y RLYRG G V sgndg NW Y L 181
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
