|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
1-638 |
0e+00 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 1120.92 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 1 MSGAFNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECALFILDE 80
Cdd:PRK11388 1 MSGAFNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKALLTLGQAALEDAWEYMADRECALLILDE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 81 TACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGT 160
Cdd:PRK11388 81 TGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAISGQPVKTMGDQHFKQALHNWAFCATPVFDSKGRLTGT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 161 IALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDA 240
Cdd:PRK11388 161 IALACPVEQTSAADLPLTLSIAREVGNLLLTDSLLAESNRHLNQLNALLESMDDGVIAWDEQGNLQFLNAQAARLLRLDA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 241 TASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKV 320
Cdd:PRK11388 241 TASQGRAITELLTLPAVLQQAIKQAHPLKHVEVTFESQGQFIDAVITLKPIIEGQGTSFILLLHPVEQMRQLMTSQLGKV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 321 SHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD 400
Cdd:PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSD 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 401 RTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ 480
Cdd:PRK11388 401 RTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQ 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 481 LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIR 560
Cdd:PRK11388 481 LYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSSDNGRIR 560
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 90111234 561 VSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKRR 638
Cdd:PRK11388 561 LSDLPEHLFTEQATDDVSATRLSTSLSLAELEKEAIINAAQVCGGRIQEMAALLGIGRTTLWRKMKQHGIDAGQFKRR 638
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
8-629 |
2.99e-167 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 491.72 E-value: 2.99e-167
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 8 DGRGISPLIATSWERCNKL-MKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECALFILDETACILS 86
Cdd:COG3284 20 PAGGVRPLIARSWQRCREYgLDPDRPPAPRVLSGAELRELRERNEELLRAARPVLERLYEQLAGSGSVVLLTDADGVILD 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 87 RNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACP 166
Cdd:COG3284 100 TLGDPRFLDRARRVGLAPGADWSEEARGTNAIGTALAEGRPVTVHGAEHFLEANHGLTCSAAPIFDPDGRLLGVLDISGP 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 167 VEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246
Cdd:COG3284 180 ARSSQPHTLALVRAAARRIENRLFLRSFRREWRLRLHFLPEFLGSLSEGLLAFDEDGRIVAANRAARRLLGLADAALLGR 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 247 AITELLTLPAvlqqaikqahplkhveATFESQHQfiDAVITLKPIIETQGTSF--ILLLHPVEQMRQLMTSQlGKVSHTF 324
Cdd:COG3284 260 PLEELFGLDL----------------EALPDGAR--RAPASPRPLRLRDGRRLgaLLRLRPARRAARAAPAG-APAPAAL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 325 AHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCelygdAALAEEFIG------ 398
Cdd:COG3284 321 AALAGGDPAMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPFVAVNC-----AAIPEELIEselfgy 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 399 --GDRT-DNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQN 475
Cdd:COG3284 396 epGAFTgARRKGRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAG 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 476 RFSRQLYYALHAFEITIPPLRmRRGSIPALVNNKLRSLEKRFStRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSD 555
Cdd:COG3284 476 RFREDLYYRLNGLTLTLPPLR-EREDLPALIEHLLRELAAGRG-PLRLSPEALALLAAYPWPGNVRELRNVLRTALALAD 553
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 90111234 556 NGRIRVSDLPEHLFTEQATDDVSATRLSTSLsfAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHG 629
Cdd:COG3284 554 GGVITVEDLPDELRAELAAAAPAAAAPLTSL--EEAERDAILRALRACGGNVSAAARALGISRSTLYRKLKRYG 625
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
197-631 |
3.81e-107 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 330.97 E-value: 3.81e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 197 ETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTlPAVLQQAIKQAHPLKHVeaTFE 276
Cdd:COG3829 5 ELKELEEELEAILDSLDDGIIVVDADGRITYVNRAAERILGLPREEVIGKNVTELIP-NSPLLEVLKTGKPVTGV--IQK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 277 SQHQFIDAVITLKPIIEtQG--TSFILLLHPVEQMRQLM-------TSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARS 347
Cdd:COG3829 82 TGGKGKTVIVTAIPIFE-DGevIGAVETFRDITELKRLErklreeeLERGLSAKYTFDDIIGKSPAMKELLELAKRVAKS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 348 SFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCelygdAALAEE-------------FIGGDRtdneNGRLSRLEL 414
Cdd:COG3829 161 DSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNC-----AAIPENlleselfgyekgaFTGAKK----GGKPGLFEL 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 415 AHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPP 494
Cdd:COG3829 232 ADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPP 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 495 LRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQA 573
Cdd:COG3829 312 LRERKEDIPLLAEHFLEKFNKKYGKNIKgISPEALELLLAYDWPGNVRELENVIERAVVLSEGDVITPEHLPEYLLEEAE 391
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 90111234 574 TDDvSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631
Cdd:COG3829 392 AAS-AAEEGSLKEALEEVEKELIEEALEKTGGNKSKAAKALGISRSTLYRKLKKYGIK 448
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
330-629 |
3.53e-78 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 254.50 E-value: 3.53e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 330 DDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCelygdAALAEEFIG--------GDR 401
Cdd:COG2204 136 RSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVAVNC-----AAIPEELLEselfghekGAF 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 402 TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQL 481
Cdd:COG2204 211 TGAVARRIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDVRVIAATNRDLEELVEEGRFREDL 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 482 YYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRV 561
Cdd:COG2204 291 YYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKPVKLSPEALEALLAYDWPGNVRELENVIERAVILADGEVITA 370
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 90111234 562 SDLPEHLfteqatddvsatrlstslsfAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHG 629
Cdd:COG2204 371 EDLPEAL--------------------EEVERELIERALEETGGNVSRAAELLGISRRTLYRKLKKYG 418
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
200-566 |
1.74e-54 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 193.87 E-value: 1.74e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 200 RHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQ-----QAIKQAHPLKHVEAT 274
Cdd:COG3283 77 REHLELDALLEALPDPVFSIDLKGKIELANPAALSLLGLSEEELIGQPLSELLKGFNFSRwlesnEPRPQSERVVINGQD 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 275 F------------ESQHQFIDAVITLKPIIETQgtsfilllhpvEQMRQLMTSQLGkvshTFAHMPQDDPQTRRLIhfgR 342
Cdd:COG3283 157 YladilpiylpdeEGKSILAGAVVTLKSAARLG-----------EQLQALQVNDDS----GFDHIVASSPKMRQVI---R 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 343 QAARSSF---PVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNC----------ELYGDAAlaeefigGDRTDNENGRL 409
Cdd:COG3283 219 QAKKMAMldaPLLIQGETGTGKELLARACHLASPRGDKPFLALNCaalpddvaesELFGYAP-------GAFGNAREGKK 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 410 SRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFE 489
Cdd:COG3283 292 GLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFREDLYYRLNVLT 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 490 ITIPPLRMRRGSIPALVnnklRSLEKRFSTRL-----KIDDDALARLVSCAWPGNDFELYSVIENlALS-SDNGRIRVSD 563
Cdd:COG3283 372 LTLPPLRERKSDILPLA----EHFVARFSQQLgrprpRLSPDLVDFLQSYPWPGNVRQLENALYR-AVSlLEGDELTPED 446
|
....*
gi 90111234 564 --LPE 566
Cdd:COG3283 447 lqLPE 451
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
303-630 |
5.37e-51 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 182.64 E-value: 5.37e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 303 LHPVEQMRQLMTSQLGKVShtFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAV 382
Cdd:TIGR02915 119 LYTLETENRRLQSALGGTA--LRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAI 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 383 NCELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVK 459
Cdd:TIGR02915 197 NCAAIPENLLESELFGyekGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVR 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 460 VIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNnklrSLEKRFSTRLK-----IDDDALARLVSC 534
Cdd:TIGR02915 277 IVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLAN----AFLERFARELKrktkgFTDDALRALEAH 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 535 AWPGNDFELYSVIENLALSSDNGRIRVSDLPehlFTEQAtddVSATRLSTSLSFA--EVEKEAIINAAQVTGGRIQEMSA 612
Cdd:TIGR02915 353 AWPGNVRELENKVKRAVIMAEGNQITAEDLG---LDARE---RAETPLEVNLREVreRAEREAVRKAIARVDGNIARAAE 426
|
330
....*....|....*...
gi 90111234 613 LLGIGRTTLWRKMKQHGI 630
Cdd:TIGR02915 427 LLGITRPTLYDLMKKHGI 444
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
322-631 |
3.69e-47 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 174.14 E-value: 3.69e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 322 HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNE--------SERAAGPYIAVNC--------- 384
Cdd:PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREyfarhdarQGKKSHPFVAVNCgaiaeslle 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 385 -ELYG--DAAlaeeFIGGDRtdneNGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVI 461
Cdd:PRK15424 296 aELFGyeEGA----FTGSRR----GGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVI 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 462 ATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPAL----VNNKLRSLEKRFSTrlkiddDALARLVSCA-- 535
Cdd:PRK15424 368 SATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLaesfLKQSLAALSAPFSA------ALRQGLQQCEtl 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 536 -----WPGNDFELYSVIENLALssdngriRVSDLPEHLFTEQATDDVSATRLSTSLSFAE--VEKEAIINAAQVTGGRIQ 608
Cdd:PRK15424 442 llhydWPGNVRELRNLMERLAL-------FLSVEPTPDLTPQFLQLLLPELARESAKTPAprLLAATLQQALERFNGDKT 514
|
330 340
....*....|....*....|...
gi 90111234 609 EMSALLGIGRTTLWRKMKQHGID 631
Cdd:PRK15424 515 AAANYLGISRTTLWRRLKAEAKA 537
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
326-631 |
1.67e-46 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 170.80 E-value: 1.67e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 326 HMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRT 402
Cdd:PRK11361 144 HILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGhekGAFT 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 403 DNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLY 482
Cdd:PRK11361 224 GAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLF 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 483 YALHAFEITIPPLRMRRGSIPALVNNKLrsleKRFSTR-----LKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNG 557
Cdd:PRK11361 304 YRLNVIHLILPPLRDRREDISLLANHFL----QKFSSEnqrdiIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGP 379
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 90111234 558 RIRVSDLPEHLFTEQATDDVSATRLSTSLSFAE----VEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631
Cdd:PRK11361 380 IIFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEeikrVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQEYGID 457
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
331-491 |
2.31e-46 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 161.42 E-value: 2.31e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 331 DPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCelygdAALAEEFI--------GGDRT 402
Cdd:pfam00158 5 SPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNC-----AAIPEELLeselfgheKGAFT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 403 DNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLY 482
Cdd:pfam00158 80 GADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLY 159
|
....*....
gi 90111234 483 YALHAFEIT 491
Cdd:pfam00158 160 YRLNVIPIE 168
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
330-631 |
6.23e-46 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 165.79 E-value: 6.23e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 330 DDPQTRRLIHFGRQAArssfpVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCelygdAALAEEfiggdrtdnengrl 409
Cdd:COG3604 102 SEEDLRLLETLASLAA-----VAILGETGTGKELVANAIHELSPRADKPFVKVNC-----AALPES-------------- 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 410 srlelahggtlflekieylavelqsaLLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFE 489
Cdd:COG3604 158 --------------------------LLESLQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFP 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 490 ITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEhl 568
Cdd:COG3604 212 IRLPPLRERREDIPLLAEHFLEKFSRRLGKPiLRLSPEALEALMAYPWPGNVRELENVIERAVILAEGGVLDADDLAP-- 289
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 90111234 569 fteqatddvsatrlSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631
Cdd:COG3604 290 --------------GSREALEEVEREHILEALERTGGNIAGAARLLGLTPSTLRSRMKKLGIK 338
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
330-563 |
8.92e-46 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 170.28 E-value: 8.92e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 330 DDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNEN 406
Cdd:TIGR01817 201 KSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGhekGAFTGAIA 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 407 GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALH 486
Cdd:TIGR01817 281 QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRIN 360
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 90111234 487 AFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSD 563
Cdd:TIGR01817 361 VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLSRSGTITRSD 437
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
332-636 |
9.58e-42 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 156.92 E-value: 9.58e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 332 PQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGR 408
Cdd:PRK15115 141 PLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGharGAFTGAVSNR 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 409 LSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAF 488
Cdd:PRK15115 221 EGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVV 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 489 EITIPPLRMRRGSIPALVNNKLRSLEKR-------FSTrlkiddDALARLVSCAWPGNDFELYSVIEN-LALSSdngrir 560
Cdd:PRK15115 301 SLKIPALAERTEDIPLLANHLLRQAAERhkpfvraFST------DAMKRLMTASWPGNVRQLVNVIEQcVALTS------ 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 561 VSDLPEHLfTEQATDDvSATRLSTslsFAEVEKEAIIN----AAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFK 636
Cdd:PRK15115 369 SPVISDAL-VEQALEG-ENTALPT---FVEARNQFELNylrkLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
311-627 |
1.96e-41 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 156.34 E-value: 1.96e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 311 QLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDA 390
Cdd:PRK10365 125 HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNES 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 391 ALAEEFIGGDR---TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTAD 467
Cdd:PRK10365 205 LLESELFGHEKgafTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 468 LAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSV 546
Cdd:PRK10365 285 LAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKgFTPQAMDLLIHYDWPGNIRELENA 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 547 IENLALSSDNGRIRVSDLPEHLfteqATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMK 626
Cdd:PRK10365 365 VERAVVLLTGEYISERELPLAI----ASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440
|
.
gi 90111234 627 Q 627
Cdd:PRK10365 441 R 441
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
256-631 |
7.04e-41 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 155.03 E-value: 7.04e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 256 AVLQQaIKQAHPLKHVeaTFESQHQFIDAVITL----------KP--IIETQGTSFILLLHPVEQMRQLMTSQLGKVSHT 323
Cdd:PRK10923 64 ALLKQ-IKQRHPMLPV--IIMTAHSDLDAAVSAyqqgafdylpKPfdIDEAVALVERAISHYQEQQQPRNIQVNGPTTDI 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 324 FAHMP--QDdpqTRRLIhfGRqAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCelygdAALAEEFIGGDR 401
Cdd:PRK10923 141 IGEAPamQD---VFRII--GR-LSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNM-----AAIPKDLIESEL 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 402 TDNENG--------RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVE 473
Cdd:PRK10923 210 FGHEKGaftgantiRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQ 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 474 QNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKI-DDDALARLVSCAWPGNDFELYSVIENLAL 552
Cdd:PRK10923 290 EGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLlHPETEAALTRLAWPGNVRQLENTCRWLTV 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 553 SSDNGRIRVSDLPEHLF-------TEQATDDVSATRLST--------------SLSFAEVEKEAIINAAQVTGGRIQEMS 611
Cdd:PRK10923 370 MAAGQEVLIQDLPGELFestvpesTSQMQPDSWATLLAQwadralrsghqnllSEAQPELERTLLTTALRHTQGHKQEAA 449
|
410 420
....*....|....*....|
gi 90111234 612 ALLGIGRTTLWRKMKQHGID 631
Cdd:PRK10923 450 RLLGWGRNTLTRKLKELGME 469
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
303-580 |
4.54e-38 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 148.01 E-value: 4.54e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 303 LHPVEQMRQL-MTSQLGKVSHTFAHMPQDD--------PQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESE 373
Cdd:PRK05022 156 LRNALLIEQLeSQAELPQDVAEFLRQEALKegemigqsPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 374 RAAGPYIAVNCelygdAALAE-----EFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVI 445
Cdd:PRK05022 236 RADKPLVYLNC-----AALPEslaesELFGhvkGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEI 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 446 TRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKID 524
Cdd:PRK05022 311 QRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRsLRLS 390
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 90111234 525 DDALARLVSCAWPGNDFELYSVIEN---LALSSDNGRIrVSDLPEHLFTEQATDDVSAT 580
Cdd:PRK05022 391 PAAQAALLAYDWPGNVRELEHVISRaalLARARGAGRI-VTLEAQHLDLPAEVALPPPE 448
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
345-631 |
5.20e-38 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 149.98 E-value: 5.20e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 345 ARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDR---TDNENGRLSRLELAHGGTLF 421
Cdd:PRK15429 396 AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERgafTGASAQRIGRFELADKSSLF 475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 422 LEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGS 501
Cdd:PRK15429 476 LDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPED 555
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 502 IPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSdLPEHLFTEQATDDVSat 580
Cdd:PRK15429 556 IPLLVKAFTFKIARRMGRNIdSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS-LPDITLPEPETPPAA-- 632
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 90111234 581 rlSTSLSFAEVEKEAIINAAQVTGGRI---QEMSALLGIGRTTLWRKMKQHGID 631
Cdd:PRK15429 633 --TVVAQEGEDEYQLIVRVLKETNGVVagpKGAAQRLGLKRTTLLSRMKRLGID 684
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
205-567 |
5.34e-31 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 127.50 E-value: 5.34e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTlPAVLQQAIKQAHPLKHVEATFESQHQFIDA 284
Cdd:PRK10820 82 LSALLEALPEPVLSIDMKGKVELANPASCQLFGQSEEKLRNHTAAQLIN-GFNFLRWLESEPQDSHNEHVVINGQDFLME 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 285 VITLKPIIETQGT----SFILLLHPVEQMRQLMTSQLGKVShTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG 360
Cdd:PRK10820 161 ITPVYLQDENDQHvlvgAVVMLRSTARMGRQLQNLAVNDDS-AFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTG 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 361 KALLSQAIHNESERAAGPYIAVNC----------ELYGDAAlaeefigGDRTDNENGRLSRLELAHGGTLFLEKIEYLAV 430
Cdd:PRK10820 240 KDLLAYACHLRSPRGKKPFLALNCasipddvvesELFGHAP-------GAYPNALEGKKGFFEQANGGSVLLDEIGEMSP 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 431 ELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNnkl 510
Cdd:PRK10820 313 RMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTE--- 389
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 90111234 511 rSLEKRFS-----TRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSD--LPEH 567
Cdd:PRK10820 390 -LFVARFAdeqgvPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQLEGYELRPQDilLPDY 452
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
350-548 |
3.32e-25 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 106.68 E-value: 3.32e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 350 PVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEKIE 426
Cdd:PRK11608 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGheaGAFTGAQKRHPGRFERADGGTLFLDELA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 427 YLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALhAFE-ITIPPLRMRRGSIPAL 505
Cdd:PRK11608 111 TAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRL-AFDvVQLPPLRERQSDIMLM 189
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 90111234 506 VNN-------KLR-SLEKRFStrlkidDDALARLVSCAWPGNDFELYSVIE 548
Cdd:PRK11608 190 AEHfaiqmcrELGlPLFPGFT------ERARETLLNYRWPGNIRELKNVVE 234
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
343-495 |
1.06e-17 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 80.08 E-value: 1.06e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 343 QAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPyiaVNCELYGDAALaeefiggdrtdnengrlSRLELAHGGTLFL 422
Cdd:pfam14532 16 QAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQP---FDIEYLAHAPL-----------------ELLEQAKGGTLYL 75
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 90111234 423 EKIEYLAVELQSALLQVIkqgvitrldaRRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPL 495
Cdd:pfam14532 76 KDIADLSKALQKGLLLLL----------AKAEGYRVRLVCTSSKDLPQLAAAGLFDEQLYFELSALRLHVPPL 138
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
335-479 |
4.35e-17 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 78.73 E-value: 4.35e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 335 RRLIHFGRQAA--RSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNC-ELYGDAALAEEFiggdRTDNENGRLSR 411
Cdd:cd00009 4 EEAIEALREALelPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAsDLLEGLVVAELF----GHFLVRLLFEL 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 90111234 412 LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARrlipiDVKVIATTTADLAMLVEQNRFSR 479
Cdd:cd00009 80 AEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRE-----NVRVIGATNRPLLGDLDRALYDR 142
|
|
| NtrB |
COG3852 |
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms]; |
199-312 |
7.43e-12 |
|
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];
Pssm-ID: 443061 [Multi-domain] Cd Length: 361 Bit Score: 67.18 E-value: 7.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 199 NRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELL----TLPAVLQQAIKQAHPLKHVEAT 274
Cdd:COG3852 3 RESEELLRAILDSLPDAVIVLDADGRITYVNPAAERLLGLSAEELLGRPLAELFpedsPLRELLERALAEGQPVTEREVT 82
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 90111234 275 FES-QHQFIDAVITLKPIIETQG-TSFILLLHPVEQMRQL 312
Cdd:COG3852 83 LRRkDGEERPVDVSVSPLRDAEGeGGVLLVLRDITERKRL 122
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
350-568 |
4.08e-11 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 66.28 E-value: 4.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 350 PVLLCGEEGVGKALLSQAIHN---ESER--AAGPYIAVNCELYGD------AAL------AeeFIGGDRtDNEnGrLsrL 412
Cdd:COG1221 132 HTLILGPTGVGKSFFAELMYEyaiEIGVlpEDAPFVVFNCADYANnpqllmSQLfgyvkgA--FTGADK-DKE-G-L--I 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 413 ELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRL-DARRLIPIDVKVIATTTADL--AMLveqNRFSR----Qlyyal 485
Cdd:COG1221 205 EKADGGILFLDEVHRLPPEGQEMLFTFMDKGIYRRLgETEKTRKANVRIIFATTEDPesSLL---KTFLRripmV----- 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 486 hafeITIPPLRMRrgSIP---ALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVI---------ENLALS 553
Cdd:COG1221 277 ----IKLPSLEER--SLEerlELIKHFFKEEAKRLNKPIKVSKEVLKALLLYDCPGNIGQLKSDIqlacakaflNYITNK 350
|
250
....*....|....*
gi 90111234 554 SDNGRIRVSDLPEHL 568
Cdd:COG1221 351 KEEIEITLSDLPENV 365
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
589-627 |
6.27e-11 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 57.40 E-value: 6.27e-11
10 20 30
....*....|....*....|....*....|....*....
gi 90111234 589 AEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQ 627
Cdd:pfam02954 2 EEVEKELIEAALERTGGNKSKAARLLGISRRTLYRKLKK 40
|
|
| PAS |
pfam00989 |
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
203-306 |
1.12e-10 |
|
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain can bind gases (O2, CO and NO), FAD, 4-hydroxycinnamic acid and NAD+ (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395786 [Multi-domain] Cd Length: 113 Bit Score: 58.97 E-value: 1.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 203 NQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELL------TLPAVLQQAIKQAHPLKHVEATFE 276
Cdd:pfam00989 1 EDLRAILESLPDGIFVVDEDGRILYVNAAAEELLGLSREEVIGKSLLDLIpeeddaEVAELLRQALLQGEESRGFEVSFR 80
|
90 100 110
....*....|....*....|....*....|...
gi 90111234 277 -SQHQFIDAVITLKPIIETQG--TSFILLLHPV 306
Cdd:pfam00989 81 vPDGRPRHVEVRASPVRDAGGeiLGFLGVLRDI 113
|
|
| PAS |
smart00091 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
204-266 |
3.34e-06 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels.
Pssm-ID: 214512 Cd Length: 67 Bit Score: 45.08 E-value: 3.34e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 90111234 204 QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELL--TLPAVLQQAIKQAH 266
Cdd:smart00091 2 RLRAILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGKSLLELIhpEDRERVQEALQRLL 66
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
350-483 |
3.77e-06 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 46.98 E-value: 3.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 350 PVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENG--------RLSRLELAHGGTLF 421
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGsgelrlrlALALARKLKPDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 90111234 422 LEKIEYLAVELQSALLQVIkqgVITRLDARRLIPIDVKVIATTTAD---LAMLVEqNRFSRQLYY 483
Cdd:smart00382 84 LDEITSLLDAEQEALLLLL---EELRLLLLLKSEKNLTVILTTNDEkdlGPALLR-RRFDRRIVL 144
|
|
| NtrY |
COG5000 |
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ... |
156-264 |
1.05e-05 |
|
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];
Pssm-ID: 444024 [Multi-domain] Cd Length: 422 Bit Score: 48.42 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 156 RLTGTI-ALACPVEQTTAADLPLTLAIAR--EVGNL-----LLTDSLlAETNRHLNQ----LNALLESMDDGVISWDEQG 223
Cdd:COG5000 32 RLTRPLrRLAEATRAVAAGDLSVRLPVTGddEIGELarafnRMTDQL-KEQREELEErrryLETILENLPAGVIVLDADG 110
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 90111234 224 NLQFINAQAARVLRLDATASQGRAITELL---TLPAVLQQAIKQ 264
Cdd:COG5000 111 RITLANPAAERLLGIPLEELIGKPLEELLpelDLAELLREALER 154
|
|
| PRK11360 |
PRK11360 |
two-component system sensor histidine kinase AtoS; |
174-315 |
1.81e-05 |
|
two-component system sensor histidine kinase AtoS;
Pssm-ID: 236901 [Multi-domain] Cd Length: 607 Bit Score: 47.66 E-value: 1.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 174 DLPLTL-AIAREVGNLllTDSL--LAETNRHLNQLNAL-LESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249
Cdd:PRK11360 231 DLSTRLpPLPGELGEI--SQAInnLAQALRETRSLNELiLESIADGVIAIDRQGKITTMNPAAEVITGLQRHELVGKPYS 308
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 90111234 250 ELLTLPA----VLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSF--ILLLHPVEQMRQLMTS 315
Cdd:PRK11360 309 ELFPPNTpfasPLLDTLEHGTEHVDLEISFPGRDRTIELSVSTSLLHNTHGEMIgaLVIFSDLTERKRLQRR 380
|
|
| CitA |
COG3290 |
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction ... |
177-326 |
2.99e-05 |
|
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction mechanisms];
Pssm-ID: 442519 [Multi-domain] Cd Length: 389 Bit Score: 46.77 E-value: 2.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 177 LTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATasqGRAITEL----L 252
Cdd:COG3290 58 LILLLLLLLLLAALLLKLLEEIARLVEEREAVLESIREGVIAVDRDGRITLINDAARRLLGLDAI---GRPIDEVlaevL 134
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 90111234 253 TLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQgtsfiLLLHPVEQMRQLMTSqLGKVSHTFAH 326
Cdd:COG3290 135 ETGERDEEILLNGRVLVVNRVPIRDDGRVVGAVATFRDRTELE-----RLEEELEGVKELAEA-LRAQRHDFRN 202
|
|
| Fis |
COG2901 |
DNA-binding protein Fis (factor for inversion stimulation) [Transcription]; |
589-631 |
3.14e-04 |
|
DNA-binding protein Fis (factor for inversion stimulation) [Transcription];
Pssm-ID: 442146 [Multi-domain] Cd Length: 83 Bit Score: 39.80 E-value: 3.14e-04
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 90111234 589 AEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631
Cdd:COG2901 41 AEVEKPLLETVLEHTRGNQSRAAEMLGINRNTLRKKLKQYGLL 83
|
|
| PAS |
COG2202 |
PAS domain [Signal transduction mechanisms]; |
147-291 |
8.06e-04 |
|
PAS domain [Signal transduction mechanisms];
Pssm-ID: 441804 [Multi-domain] Cd Length: 258 Bit Score: 41.55 E-value: 8.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 147 ATPLFDSKGRLTGTIAlacpveqttaadlpltlaIAREVgnlllTDSLLAETN--RHLNQLNALLESMDDGVISWDEQGN 224
Cdd:COG2202 102 ISPVRDEDGEITGFVG------------------IARDI-----TERKRAEEAlrESEERLRLLVENAPDGIFVLDLDGR 158
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 90111234 225 LQFINAQAARVLRLDATASQGRAITELLTLP--AVLQQAIKQAhpLKHVEATFESQHQFIDAVITLKPI 291
Cdd:COG2202 159 ILYVNPAAEELLGYSPEELLGKSLLDLLHPEdrERLLELLRRL--LEGGRESYELELRLKDGDGRWVWV 225
|
|
| PAS_8 |
pfam13188 |
PAS domain; PAS domains are involved in many signalling proteins where they are used as a ... |
203-267 |
1.26e-03 |
|
PAS domain; PAS domains are involved in many signalling proteins where they are used as a signal sensor domain. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Heme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. This domain recognizes oxygen and CO (Matilla et al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 463802 [Multi-domain] Cd Length: 65 Bit Score: 37.53 E-value: 1.26e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 90111234 203 NQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHP 267
Cdd:pfam13188 1 ERLRALFESSPDGILVLDEGGRIIYVNPAALELLGYELLGELLGELLDLLDPLLEDALELLRELR 65
|
|
| PRK11086 |
PRK11086 |
sensory histidine kinase DcuS; Provisional |
202-275 |
1.42e-03 |
|
sensory histidine kinase DcuS; Provisional
Pssm-ID: 236839 [Multi-domain] Cd Length: 542 Bit Score: 41.82 E-value: 1.42e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 90111234 202 LNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDAT---ASQGRAITELLTLpAVLQQAIKQAHPLKHVEATF 275
Cdd:PRK11086 220 FEQRQAMLQSIKEGVIAVDDRGEVTLINDEAKRLFNYKKGledDPLGTDVESWMPV-SRLKEVLRTGTPRRDEEINI 295
|
|
| PAS |
cd00130 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
212-303 |
4.58e-03 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Pssm-ID: 238075 [Multi-domain] Cd Length: 103 Bit Score: 37.23 E-value: 4.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 212 MDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELL---TLPAVLQQAIKQAHPLKHVEATFE---SQHQFIDAV 285
Cdd:cd00130 1 LPDGVIVLDLDGRILYANPAAEQLLGYSPEELIGKSLLDLIhpeDREELRERLENLLSGGEPVTLEVRlrrKDGSVIWVL 80
|
90
....*....|....*...
gi 90111234 286 ITLKPIIETQGTSFILLL 303
Cdd:cd00130 81 VSLTPIRDEGGEVIGLLG 98
|
|
| dpiB |
PRK15053 |
sensor histidine kinase DpiB; Provisional |
148-253 |
5.20e-03 |
|
sensor histidine kinase DpiB; Provisional
Pssm-ID: 185013 [Multi-domain] Cd Length: 545 Bit Score: 39.82 E-value: 5.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 90111234 148 TPLFDSKGRLTGTIALACPVEQTTA--AD--LPLTLAIAREVGNLLLTDSLLA-------------ETNRHLNQLNALLE 210
Cdd:PRK15053 150 TPIFDDDGKVIGVVSIGYLVSKIDSwrLEflLPMAGVFVVLLGILMLLSWFFAahirrqmmgmepkQIARVVRQQEALFS 229
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 90111234 211 SMDDGVISWDEQGNLQFINAQAARVLRLDATASQ--GRAITELLT 253
Cdd:PRK15053 230 SVYEGLIAVDPHGYITAINRNARKMLGLSSPGRQwlGKPIAEVVR 274
|
|
| AlpA |
COG3311 |
DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons]; |
606-639 |
7.61e-03 |
|
DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons];
Pssm-ID: 442540 [Multi-domain] Cd Length: 64 Bit Score: 35.29 E-value: 7.61e-03
10 20 30
....*....|....*....|....*....|....
gi 90111234 606 RIQEMSALLGIGRTTLWRKMKqhgidAGQFKRRV 639
Cdd:COG3311 10 RLKEVAELLGVSRSTIYRLIK-----KGEFPKPV 38
|
|
| |
