NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|16129054|ref|NP_415609|]
View 

3-oxoacyl-[acyl carrier protein] synthase 3 [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

beta-ketoacyl-ACP synthase III( domain architecture ID 11483998)

beta-ketoacyl-[acyl-carrier-protein] synthase 3 initiates the elongation in type II fatty acid synthase by specifically using acetyl-CoA over acyl-CoA

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
PRK09352 PRK09352
beta-ketoacyl-ACP synthase 3;
1-317 0e+00

beta-ketoacyl-ACP synthase 3;


:

Pssm-ID: 236475 [Multi-domain]  Cd Length: 319  Bit Score: 584.34  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054    1 MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVAT 80
Cdd:PRK09352   2 MYAKILGTGSYLPERVVTNDDLEKMVDTSDEWIVTRTGIKERRIAAPDETTSDLATEAAKKALEAAGIDPEDIDLIIVAT 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   81 TSATHAFPSAACQIQSMLGIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDG 160
Cdd:PRK09352  82 TTPDYAFPSTACLVQARLGAKNAAAFDLSAACSGFVYALSTADQFIRSGAYKNVLVIGAEKLSRIVDWTDRSTCVLFGDG 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  161 AGAAVLAASEEPGIISTHLHADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVTELAHIVDETLAANNLDRSQLDW 240
Cdd:PRK09352 162 AGAVVLGASEEPGILSTHLGSDGSYGDLLYLPGGGSRGPASPGYLRMEGREVFKFAVRELAKVAREALEAAGLTPEDIDW 241
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16129054  241 LVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVRF 317
Cdd:PRK09352 242 LVPHQANLRIIDATAKKLGLPMEKVVVTVDKYGNTSAASIPLALDEAVRDGRIKRGDLVLLEGFGGGLTWGAALVRW 318
 
Name Accession Description Interval E-value
PRK09352 PRK09352
beta-ketoacyl-ACP synthase 3;
1-317 0e+00

beta-ketoacyl-ACP synthase 3;


Pssm-ID: 236475 [Multi-domain]  Cd Length: 319  Bit Score: 584.34  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054    1 MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVAT 80
Cdd:PRK09352   2 MYAKILGTGSYLPERVVTNDDLEKMVDTSDEWIVTRTGIKERRIAAPDETTSDLATEAAKKALEAAGIDPEDIDLIIVAT 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   81 TSATHAFPSAACQIQSMLGIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDG 160
Cdd:PRK09352  82 TTPDYAFPSTACLVQARLGAKNAAAFDLSAACSGFVYALSTADQFIRSGAYKNVLVIGAEKLSRIVDWTDRSTCVLFGDG 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  161 AGAAVLAASEEPGIISTHLHADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVTELAHIVDETLAANNLDRSQLDW 240
Cdd:PRK09352 162 AGAVVLGASEEPGILSTHLGSDGSYGDLLYLPGGGSRGPASPGYLRMEGREVFKFAVRELAKVAREALEAAGLTPEDIDW 241
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16129054  241 LVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVRF 317
Cdd:PRK09352 242 LVPHQANLRIIDATAKKLGLPMEKVVVTVDKYGNTSAASIPLALDEAVRDGRIKRGDLVLLEGFGGGLTWGAALVRW 318
fabH TIGR00747
3-oxoacyl-(acyl-carrier-protein) synthase III; FabH in general initiate elongation in type II ...
1-317 0e+00

3-oxoacyl-(acyl-carrier-protein) synthase III; FabH in general initiate elongation in type II fatty acid synthase systems found in bacteria and plants. The two members of this subfamily from Bacillus subtilis differ from each other, and from FabH from E. coli, in acyl group specificity. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment. [Fatty acid and phospholipid metabolism, Biosynthesis]


Pssm-ID: 273249 [Multi-domain]  Cd Length: 318  Bit Score: 541.59  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054     1 MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVAT 80
Cdd:TIGR00747   1 MYAGILGTGSYLPEKVLTNADLEKMVDTSDEWIVTRTGIKERRIAADDETSSTMGFEAAKRAIENAGISKDDIDLIIVAT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054    81 TSATHAFPSAACQIQSMLGIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDG 160
Cdd:TIGR00747  81 TTPDHAFPSAACMVQAYLGIKGIPAFDLSAACAGFIYALSVAKQYIESGKYKTVLVVGAEKLSSTLDWTDRGTCVLFGDG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   161 AGAAVLAASEEPG-IISTHLHADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVTELAHIVDETLAANNLDRSQLD 239
Cdd:TIGR00747 161 AGAVVLGESEDPGgIISTHLGADGTQGEALYLPAGGRPTSGPSPFITMEGNEVFKHAVRKMGDVVEETLEANGLDPEDID 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16129054   240 WLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVRF 317
Cdd:TIGR00747 241 WFVPHQANLRIIEALAKRLELDMSQVVKTVHKYGNTSAASIPLALDELLRTGRIKPGDLLLLVAFGGGLTWGAALVRF 318
FabH COG0332
3-oxoacyl-[acyl-carrier-protein] synthase III [Lipid transport and metabolism]; 3-oxoacyl- ...
1-317 1.65e-171

3-oxoacyl-[acyl-carrier-protein] synthase III [Lipid transport and metabolism]; 3-oxoacyl-[acyl-carrier-protein] synthase III is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 440101 [Multi-domain]  Cd Length: 323  Bit Score: 478.06  E-value: 1.65e-171
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   1 MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVAT 80
Cdd:COG0332   1 RNVRILGTGSYLPERVVTNDDLEKRLDTSDEWIEERTGIRERRIAAPDETTSDLAVEAARKALEAAGIDPEDIDLIIVAT 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  81 TSATHAFPSAACQIQSMLGIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDG 160
Cdd:COG0332  81 VTPDYLFPSTACLVQHKLGAKNAAAFDINAACSGFVYALSVAAALIRSGQAKNVLVVGAETLSRIVDWTDRSTCVLFGDG 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054 161 AGAAVLAASEE-PGIISTHLHADGSYGELLTLPNADRVNP-----ENSIHLTMAGNEVFKVAVTELAHIVDETLAANNLD 234
Cdd:COG0332 161 AGAVVLEASEEgPGILGSVLGSDGSGADLLVVPAGGSRNPpspvdEGDHYLRMDGREVFKFAVRNLPEVIREALEKAGLT 240
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054 235 RSQLDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSAL 314
Cdd:COG0332 241 LDDIDWFIPHQANLRIIEAVAKRLGLPEEKVVVNIDRYGNTSAASIPLALDEALREGRIKPGDLVLLAGFGAGLTWGAAV 320

                ...
gi 16129054 315 VRF 317
Cdd:COG0332 321 LRW 323
KAS_III cd00830
Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty ...
2-315 5.17e-161

Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.


Pssm-ID: 238426 [Multi-domain]  Cd Length: 320  Bit Score: 451.61  E-value: 5.17e-161
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   2 YTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATT 81
Cdd:cd00830   1 NARILGIGSYLPERVVTNDELEKRLDTSDEWIRTRTGIRERRIADPGETTSDLAVEAAKKALEDAGIDADDIDLIIVATS 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  82 SATHAFPSAACQIQSMLGIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDGA 161
Cdd:cd00830  81 TPDYLFPATACLVQARLGAKNAAAFDINAACSGFLYGLSTAAGLIRSGGAKNVLVVGAETLSRILDWTDRSTAVLFGDGA 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054 162 GAAVL-AASEEPGIISTHLHADGSYGELLTLPNADRVNP-----ENSIHLTMAGNEVFKVAVTELAHIVDETLAANNLDR 235
Cdd:cd00830 161 GAVVLeATEEDPGILDSVLGSDGSGADLLTIPAGGSRSPfedaeGGDPYLVMDGREVFKFAVRLMPESIEEALEKAGLTP 240
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054 236 SQLDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALV 315
Cdd:cd00830 241 DDIDWFVPHQANLRIIEAVAKRLGLPEEKVVVNLDRYGNTSAASIPLALDEAIEEGKLKKGDLVLLLGFGAGLTWGAALL 320
ACP_syn_III_C pfam08541
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; This domain is found on ...
228-317 4.68e-45

3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EC:2.3.1.41, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria.


Pssm-ID: 430060  Cd Length: 90  Bit Score: 148.42  E-value: 4.68e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   228 LAANNLDRSQLDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGG 307
Cdd:pfam08541   1 LEKAGLTPEDIDWFVPHQANLRIIDAVAKRLGLPPEKVVVNLDEYGNTSAASIPLALDEAVEEGKLKPGDLVLLVGFGAG 80
                          90
                  ....*....|
gi 16129054   308 FTWGSALVRF 317
Cdd:pfam08541  81 LTWGAALLRW 90
 
Name Accession Description Interval E-value
PRK09352 PRK09352
beta-ketoacyl-ACP synthase 3;
1-317 0e+00

beta-ketoacyl-ACP synthase 3;


Pssm-ID: 236475 [Multi-domain]  Cd Length: 319  Bit Score: 584.34  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054    1 MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVAT 80
Cdd:PRK09352   2 MYAKILGTGSYLPERVVTNDDLEKMVDTSDEWIVTRTGIKERRIAAPDETTSDLATEAAKKALEAAGIDPEDIDLIIVAT 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   81 TSATHAFPSAACQIQSMLGIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDG 160
Cdd:PRK09352  82 TTPDYAFPSTACLVQARLGAKNAAAFDLSAACSGFVYALSTADQFIRSGAYKNVLVIGAEKLSRIVDWTDRSTCVLFGDG 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  161 AGAAVLAASEEPGIISTHLHADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVTELAHIVDETLAANNLDRSQLDW 240
Cdd:PRK09352 162 AGAVVLGASEEPGILSTHLGSDGSYGDLLYLPGGGSRGPASPGYLRMEGREVFKFAVRELAKVAREALEAAGLTPEDIDW 241
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16129054  241 LVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVRF 317
Cdd:PRK09352 242 LVPHQANLRIIDATAKKLGLPMEKVVVTVDKYGNTSAASIPLALDEAVRDGRIKRGDLVLLEGFGGGLTWGAALVRW 318
fabH TIGR00747
3-oxoacyl-(acyl-carrier-protein) synthase III; FabH in general initiate elongation in type II ...
1-317 0e+00

3-oxoacyl-(acyl-carrier-protein) synthase III; FabH in general initiate elongation in type II fatty acid synthase systems found in bacteria and plants. The two members of this subfamily from Bacillus subtilis differ from each other, and from FabH from E. coli, in acyl group specificity. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment. [Fatty acid and phospholipid metabolism, Biosynthesis]


Pssm-ID: 273249 [Multi-domain]  Cd Length: 318  Bit Score: 541.59  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054     1 MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVAT 80
Cdd:TIGR00747   1 MYAGILGTGSYLPEKVLTNADLEKMVDTSDEWIVTRTGIKERRIAADDETSSTMGFEAAKRAIENAGISKDDIDLIIVAT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054    81 TSATHAFPSAACQIQSMLGIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDG 160
Cdd:TIGR00747  81 TTPDHAFPSAACMVQAYLGIKGIPAFDLSAACAGFIYALSVAKQYIESGKYKTVLVVGAEKLSSTLDWTDRGTCVLFGDG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   161 AGAAVLAASEEPG-IISTHLHADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVTELAHIVDETLAANNLDRSQLD 239
Cdd:TIGR00747 161 AGAVVLGESEDPGgIISTHLGADGTQGEALYLPAGGRPTSGPSPFITMEGNEVFKHAVRKMGDVVEETLEANGLDPEDID 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16129054   240 WLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVRF 317
Cdd:TIGR00747 241 WFVPHQANLRIIEALAKRLELDMSQVVKTVHKYGNTSAASIPLALDELLRTGRIKPGDLLLLVAFGGGLTWGAALVRF 318
FabH COG0332
3-oxoacyl-[acyl-carrier-protein] synthase III [Lipid transport and metabolism]; 3-oxoacyl- ...
1-317 1.65e-171

3-oxoacyl-[acyl-carrier-protein] synthase III [Lipid transport and metabolism]; 3-oxoacyl-[acyl-carrier-protein] synthase III is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 440101 [Multi-domain]  Cd Length: 323  Bit Score: 478.06  E-value: 1.65e-171
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   1 MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVAT 80
Cdd:COG0332   1 RNVRILGTGSYLPERVVTNDDLEKRLDTSDEWIEERTGIRERRIAAPDETTSDLAVEAARKALEAAGIDPEDIDLIIVAT 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  81 TSATHAFPSAACQIQSMLGIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDG 160
Cdd:COG0332  81 VTPDYLFPSTACLVQHKLGAKNAAAFDINAACSGFVYALSVAAALIRSGQAKNVLVVGAETLSRIVDWTDRSTCVLFGDG 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054 161 AGAAVLAASEE-PGIISTHLHADGSYGELLTLPNADRVNP-----ENSIHLTMAGNEVFKVAVTELAHIVDETLAANNLD 234
Cdd:COG0332 161 AGAVVLEASEEgPGILGSVLGSDGSGADLLVVPAGGSRNPpspvdEGDHYLRMDGREVFKFAVRNLPEVIREALEKAGLT 240
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054 235 RSQLDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSAL 314
Cdd:COG0332 241 LDDIDWFIPHQANLRIIEAVAKRLGLPEEKVVVNIDRYGNTSAASIPLALDEALREGRIKPGDLVLLAGFGAGLTWGAAV 320

                ...
gi 16129054 315 VRF 317
Cdd:COG0332 321 LRW 323
KAS_III cd00830
Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty ...
2-315 5.17e-161

Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.


Pssm-ID: 238426 [Multi-domain]  Cd Length: 320  Bit Score: 451.61  E-value: 5.17e-161
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   2 YTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATT 81
Cdd:cd00830   1 NARILGIGSYLPERVVTNDELEKRLDTSDEWIRTRTGIRERRIADPGETTSDLAVEAAKKALEDAGIDADDIDLIIVATS 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  82 SATHAFPSAACQIQSMLGIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDGA 161
Cdd:cd00830  81 TPDYLFPATACLVQARLGAKNAAAFDINAACSGFLYGLSTAAGLIRSGGAKNVLVVGAETLSRILDWTDRSTAVLFGDGA 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054 162 GAAVL-AASEEPGIISTHLHADGSYGELLTLPNADRVNP-----ENSIHLTMAGNEVFKVAVTELAHIVDETLAANNLDR 235
Cdd:cd00830 161 GAVVLeATEEDPGILDSVLGSDGSGADLLTIPAGGSRSPfedaeGGDPYLVMDGREVFKFAVRLMPESIEEALEKAGLTP 240
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054 236 SQLDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALV 315
Cdd:cd00830 241 DDIDWFVPHQANLRIIEAVAKRLGLPEEKVVVNLDRYGNTSAASIPLALDEAIEEGKLKKGDLVLLLGFGAGLTWGAALL 320
PRK12879 PRK12879
3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
1-316 6.32e-141

3-oxoacyl-(acyl carrier protein) synthase III; Reviewed


Pssm-ID: 237245 [Multi-domain]  Cd Length: 325  Bit Score: 400.78  E-value: 6.32e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054    1 MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVAT 80
Cdd:PRK12879   3 SYARITGIGTYVPPRVLTNDDLETFIDTSDEWIVQRTGIKERRIAHVEEYTSDLAIKAAERALARAGLDAEDIDLIIVAT 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   81 TSATHAFPSAACQIQSMLGIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDG 160
Cdd:PRK12879  83 TTPDYLFPSTASQVQARLGIPNAAAFDINAACAGFLYGLETANGLITSGLYKKVLVIGAERLSKVTDYTDRTTCILFGDG 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  161 AGAAVLAASE-EPGIISTHLHADGSYGELLTLPNA----DRVNPENSIHLTMAGNEVFKVAVTELAHIVDETLAANNLDR 235
Cdd:PRK12879 163 AGAVVLEATEnEPGFIDYVLGTDGDGGDILYRTGLgttmDRDALSGDGYIVQNGREVFKWAVRTMPKGARQVLEKAGLTK 242
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  236 SQLDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALV 315
Cdd:PRK12879 243 DDIDWVIPHQANLRIIESLCEKLGIPMEKTLVSVEYYGNTSAATIPLALDLALEQGKIKPGDTLLLYGFGAGLTWAALLV 322

                 .
gi 16129054  316 R 316
Cdd:PRK12879 323 K 323
PLN02326 PLN02326
3-oxoacyl-[acyl-carrier-protein] synthase III
3-317 7.66e-110

3-oxoacyl-[acyl-carrier-protein] synthase III


Pssm-ID: 215185  Cd Length: 379  Bit Score: 324.00  E-value: 7.66e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054    3 TKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTS 82
Cdd:PLN02326  48 SKLVGCGSAVPKLLITNDDLSKLVDTSDEWIATRTGIRNRRVLSGDETLTSLAVEAAKKALEMAGVDPEDVDLVLLCTSS 127
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   83 ATHAFPSAaCQIQSMLGIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDGAG 162
Cdd:PLN02326 128 PDDLFGSA-PQVQAALGCTNALAFDLTAACSGFVLGLVTAARFIRGGGYKNVLVIGADALSRYVDWTDRGTCILFGDGAG 206
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  163 AAVLAASEEP--GIISTHLHADGSYGELL--TLPNADRVNPENSIH--------------LTMAGNEVFKVAVTELAHIV 224
Cdd:PLN02326 207 AVVLQACDDDedGLLGFDMHSDGNGHKHLhaTFKGEDDDSSGGNTNgvgdfppkkasyscIQMNGKEVFKFAVRCVPQVI 286
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  225 DETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAF 304
Cdd:PLN02326 287 ESALQKAGLTAESIDWLLLHQANQRIIDAVAQRLGIPPEKVISNLANYGNTSAASIPLALDEAVRSGKVKKGDVIATAGF 366
                        330
                 ....*....|...
gi 16129054  305 GGGFTWGSALVRF 317
Cdd:PLN02326 367 GAGLTWGSAIVRW 379
fabH CHL00203
3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
1-317 8.93e-88

3-oxoacyl-acyl-carrier-protein synthase 3; Provisional


Pssm-ID: 164577 [Multi-domain]  Cd Length: 326  Bit Score: 266.04  E-value: 8.93e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054    1 MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVAT 80
Cdd:CHL00203   1 MGVHILSTGSSVPNFSVENQQFEDIIETSDHWISTRTGIKKRHLAPSSTSLTKLAAEAANKALDKAHMDPLEIDLIILAT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   81 TSATHAFPSAAcQIQSMLGIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDG 160
Cdd:CHL00203  81 STPDDLFGSAS-QLQAEIGATRAVAFDITAACSGFILALVTATQFIQNGSYKNILVVGADTLSKWIDWSDRKTCILFGDG 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  161 AGAAVLAASEEPGIISTHLHADGSYGELLTLPNADRVNPE---------NSIHLTMAGNEVFKVAVTELAHIVDETLAAN 231
Cdd:CHL00203 160 AGAAIIGASYENSILGFKLCTDGKLNSHLQLMNKPVNNQSfgttklpqgQYQSISMNGKEVYKFAVFQVPAVIIKCLNAL 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  232 NLDRSQLDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWG 311
Cdd:CHL00203 240 NISIDEVDWFILHQANKRILEAIANRLSVPNSKMITNLEKYGNTSAASIPLALDEAIQNNKIQPGQIIVLSGFGAGLTWG 319

                 ....*.
gi 16129054  312 SALVRF 317
Cdd:CHL00203 320 AIVLKW 325
init_cond_enzymes cd00827
"initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, ...
5-315 1.98e-81

"initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.


Pssm-ID: 238423 [Multi-domain]  Cd Length: 324  Bit Score: 249.66  E-value: 1.98e-81
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   5 IIGTGSYLPEQVRTNADLEKMVdtSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSAT 84
Cdd:cd00827   4 IEAIGAYLPRYRVDNEELAEGL--GVDPGKYTTGIGQRHMAGDDEDVPTMAVEAARRALERAGIDPDDIGLLIVATESPI 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  85 HAFPSAACQIQSMLGIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTiIIFGDGAGAA 164
Cdd:cd00827  82 DKGKSAATYLAELLGLTNAEAFDLKQACYGGTAALQLAANLVESGPWRYALVVASDIASYLLDEGSALE-PTLGDGAAAM 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054 165 VLAASEEP---GIISTHLHADGSYG----ELLTLPNADRVNPENSIHLTMA--GNEVFKVAVTELAHIVDETLAANNLDr 235
Cdd:cd00827 161 LVSRNPGIlaaGIVSTHSTSDPGYDfspyPVMDGGYPKPCKLAYAIRLTAEpaGRAVFEAAHKLIAKVVRKALDRAGLS- 239
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054 236 SQLDWLVPHQAN-LRIISATAKKLGMSMDNVVVT----LDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTW 310
Cdd:cd00827 240 EDIDYFVPHQPNgKKILEAVAKKLGGPPEKASQTrwilLRRVGNMYAASILLGLASLLESGKLKAGDRVLLFSYGSGFTA 319

                ....*
gi 16129054 311 GSALV 315
Cdd:cd00827 320 EAFVL 324
PRK05963 PRK05963
beta-ketoacyl-ACP synthase III;
3-317 2.50e-78

beta-ketoacyl-ACP synthase III;


Pssm-ID: 180328 [Multi-domain]  Cd Length: 326  Bit Score: 241.93  E-value: 2.50e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054    3 TKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTS 82
Cdd:PRK05963   4 SRIAGFGHAVPDRRVENAEIEAQLGLETGWIERRTGIRCRRWAAPDETLSDLAASAGDMALSDAGIERSDIALTLLATST 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   83 ATHAFPSAACQIQSMLGIKGCPAFDVAAACAGFTYALSVADQYVKSGAvKYALVVGSDVLARTCDPTDRGTIIIFGDGAG 162
Cdd:PRK05963  84 PDHLLPPSAPLLAHRLGLQNSGAIDLAGACAGFLYALVLADGFVRAQG-KPVLVVAANILSRRINMAERASAVLFADAAG 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  163 AAVLAASEEP--GIISTHLHADGSYGELLTLPNADRVNPENS------IHLTMA-GNEVFKVAVTELAHIVDETLAANNL 233
Cdd:PRK05963 163 AVVLAPSAKAnsGVLGSQLISDGSHYDLIKIPAGGSARPFAPerdaseFLMTMQdGRAVFTEAVRMMSGASQNVLASAAM 242
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  234 DRSQLDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSA 313
Cdd:PRK05963 243 TPQDIDRFFPHQANARIVDKVCETIGIPRAKAASTLETYGNSSAATIPLSLSLANLEQPLREGERLLFAAAGAGMTGGAV 322

                 ....
gi 16129054  314 LVRF 317
Cdd:PRK05963 323 VMRV 326
cond_enzymes cd00327
Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) ...
50-315 8.34e-66

Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.


Pssm-ID: 238201 [Multi-domain]  Cd Length: 254  Bit Score: 207.30  E-value: 8.34e-66
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  50 TVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKGCPAFDVAAACAGFTYALSVADQYVKSG 129
Cdd:cd00327   6 TASELGFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGISGGPAYSVNQACATGLTALALAVQQVQNG 85
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054 130 AVKYALVVGSDvlartcdptdrgtIIIFGDGAGAAVLAASEE---------PGIISTHLHADGSYGElltlpnadrvnpe 200
Cdd:cd00327  86 KADIVLAGGSE-------------EFVFGDGAAAAVVESEEHalrrgahpqAEIVSTAATFDGASMV------------- 139
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054 201 nsihltmagnevFKVAVTELAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMSMD-----NVVVTLDRHGNT 275
Cdd:cd00327 140 ------------PAVSGEGLARAARKALEGAGLTPSDIDYVEAHGTGTPIGDAVELALGLDPDgvrspAVSATLIMTGHP 207
                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*..
gi 16129054 276 SAASVPCALDEAVRDGRIK-------PGQLVLLEAFGGGFTWGSALV 315
Cdd:cd00327 208 LGAAGLAILDELLLMLEHEfipptprEPRTVLLLGFGLGGTNAAVVL 254
decarbox_cond_enzymes cd00825
decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new ...
51-315 1.82e-63

decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).


Pssm-ID: 238421 [Multi-domain]  Cd Length: 332  Bit Score: 204.02  E-value: 1.82e-63
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  51 VSTMGFEAATRAIEMAGIE----KDQIGLIVVATTSATHAF---------------------PSAACQIQSMLGIKGcPA 105
Cdd:cd00825  11 VSILGFEAAERAIADAGLSreyqKNPIVGVVVGTGGGSPRFqvfgadamravgpyvvtkamfPGASGQIATPLGIHG-PA 89
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054 106 FDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDP------------------TDRGTIIIFGDGAGAAVLA 167
Cdd:cd00825  90 YDVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEELAAPMDCefdamgalstpekasrtfDAAADGFVFGDGAGALVVE 169
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054 168 ASEE---------PGIISTHLHADGSYGELltlpnadrvnpensihltmagnevFKVAVTELAHIVDETLAANNLDRSQL 238
Cdd:cd00825 170 ELEHalargahiyAEIVGTAATIDGAGMGA------------------------FAPSAEGLARAAKEALAVAGLTVWDI 225
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054 239 DWLVPHQANLRIISATAKKLGMSMD-----NVVVTLDRHGNTSAASVPCALDEAVRDGRIK------------------- 294
Cdd:cd00825 226 DYLVAHGTGTPIGDVKELKLLRSEFgdkspAVSATKAMTGNLSSAAVVLAVDEAVLMLEHGfippsihieeldeaglniv 305
                       330       340
                ....*....|....*....|....*..
gi 16129054 295 ------PGQLVLLEAFGGGFTWGSALV 315
Cdd:cd00825 306 tettprELRTALLNGFGLGGTNATLVL 332
PRK07204 PRK07204
beta-ketoacyl-ACP synthase III;
2-317 1.13e-60

beta-ketoacyl-ACP synthase III;


Pssm-ID: 235964  Cd Length: 329  Bit Score: 196.59  E-value: 1.13e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054    2 YTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAApNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATT 81
Cdd:PRK07204   4 YISIKGIGTYLPKRKVDSLELDKKLDLPEGWVLKKSGVKTRHFVD-GETSSYMGAEAAKKAVEDAKLTLDDIDCIICASG 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   82 SATHAFPSAACQIQSMLGIK--GCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGD 159
Cdd:PRK07204  83 TIQQAIPCTASLIQEQLGLQhsGIPCFDINSTCLSFITALDTISYAIECGRYKRVLIISSEISSVGLNWGQNESCILFGD 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  160 GAGAAVLAASEEPG-IISTHL--HADGSY------GELLTLPNADRVNPENSIHLTMAGNEVFKVAVTELAHIVDETLAA 230
Cdd:PRK07204 163 GAAAVVITKGDHSSrILASHMetYSSGAHlseirgGGTMIHPREYSEERKEDFLFDMNGRAIFKLSSKYLMKFIDKLLMD 242
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  231 NNLDRSQLDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTW 310
Cdd:PRK07204 243 AGYTLADIDLIVPHQASGPAMRLIRKKLGVDEERFVTIFEDHGNMIAASIPVALFEAIKQKKVQRGNKILLLGTSAGLSI 322

                 ....*..
gi 16129054  311 GSALVRF 317
Cdd:PRK07204 323 GGILLEY 329
ACP_syn_III_C pfam08541
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; This domain is found on ...
228-317 4.68e-45

3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EC:2.3.1.41, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria.


Pssm-ID: 430060  Cd Length: 90  Bit Score: 148.42  E-value: 4.68e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   228 LAANNLDRSQLDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGG 307
Cdd:pfam08541   1 LEKAGLTPEDIDWFVPHQANLRIIDAVAKRLGLPPEKVVVNLDEYGNTSAASIPLALDEAVEEGKLKPGDLVLLVGFGAG 80
                          90
                  ....*....|
gi 16129054   308 FTWGSALVRF 317
Cdd:pfam08541  81 LTWGAALLRW 90
PRK07515 PRK07515
3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
5-316 1.89e-40

3-oxoacyl-(acyl carrier protein) synthase III; Reviewed


Pssm-ID: 236037  Cd Length: 372  Bit Score: 145.02  E-value: 1.89e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054    5 IIGTGSYLPEQVRTNADL------------------------EKMVDTSDEWIVTRTGIRERHI---------------- 44
Cdd:PRK07515   5 ISGTGLYTPPESISNEELvasfnayverfnaenaaaiaagevEALQPSSSEFIEKASGIKSRYVmdkegildpdrmrpri 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   45 -AAPNETVST---MGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKGCpAFDVAAACAGFTYALS 120
Cdd:PRK07515  85 pERSNDELSIqaeMGVAAARQALARAGRTAEDIDAVIVACSNMQRAYPAMAIEIQQALGIEGF-AFDMNVACSSATFGIQ 163
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  121 VADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDGAGAAVLAASEEPG------IISTHLHADGS------YGEL 188
Cdd:PRK07515 164 TAANAIRSGSARRVLVVNPEICSGHLNFRDRDSHFIFGDVATAVIVERADTATsaggfeILGTRLFTQFSnnirnnFGFL 243
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  189 ltlpnaDRVNPENS----IHLTMAGNEVFKVAVTELAHIVDETLAANNLDRSQLD--WLvpHQANLRIISATAKK-LG-- 259
Cdd:PRK07515 244 ------NRADPEGIgardKLFVQEGRKVFKEVCPMVAEHIVEHLAENGLTPADVKrfWL--HQANINMNQLIGKKvLGrd 315
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 16129054  260 MSMDNVVVTLDRHGNTSAASVPCALDEAVRDgrIKPGQLVLLEAFGGGFTWGSALVR 316
Cdd:PRK07515 316 ATPEEAPVILDEYANTSSAGSIIAFHKHSDD--LAAGDLGVICSFGAGYSIGSVIVR 370
PRK12880 PRK12880
beta-ketoacyl-ACP synthase III;
4-317 9.32e-39

beta-ketoacyl-ACP synthase III;


Pssm-ID: 171793  Cd Length: 353  Bit Score: 140.10  E-value: 9.32e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054    4 KIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTR----TGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVA 79
Cdd:PRK12880   9 KISGICVSVPEHKICIDDELESVFSNDIKTLKRmkkvIGLNTRYICDENTCVSDLGKHAANTLLQGLNIDKNSLDALIVV 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   80 TTSATHAFPSAACQIQSMLGIK-GCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGsDVLARTCDPTDRGTIIIFG 158
Cdd:PRK12880  89 TQSPDFFMPSTACYLHQLLNLSsKTIAFDLGQACAGYLYGLFVAHSLIQSGLGKILLICG-DTLSKFIHPKNMNLAPIFG 167
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  159 DGAGAAVLAASEEPGIIsTHLHADGSYGELLTLPN-------ADRVNPE---------NSIHLTMAGNEVFKVAVTELAH 222
Cdd:PRK12880 168 DGVSATLIEKTDFNEAF-FELGSDGKYFDKLIIPKgamripkADIFNDDslmqteefrQLENLYMDGANIFNMALECEPK 246
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  223 IVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMSMDNVV-VTLDRHGNTSAASVPCALDEAVRDGRIKpgqlVLL 301
Cdd:PRK12880 247 SFKEILEFSKVDEKDIAFHLFHQSNAYLVDCIKEELKLNDDKVPnFIMEKYANLSACSLPALLCELDTPKEFK----ASL 322
                        330
                 ....*....|....*.
gi 16129054  302 EAFGGGFTWGSALVRF 317
Cdd:PRK12880 323 SAFGAGLSWGSAVLNF 338
PRK06840 PRK06840
3-oxoacyl-ACP synthase;
5-316 5.28e-37

3-oxoacyl-ACP synthase;


Pssm-ID: 235872  Cd Length: 339  Bit Score: 135.13  E-value: 5.28e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054    5 IIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLiVVATTSAT 84
Cdd:PRK06840   7 IVGTGVYLPKDVMTAEEIAEKTGIPEEVVIEKFGIYEKPVPGPEDHTSDMAIAAAKPALKQAGVDPAAIDV-VIYIGSEH 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   85 HAFP--SAACQIQSMLGIKGCPAFDVAAACAGFTYALSVA-DQYVKSGAVKYALVVGSdvlARTCDPTDRGT-----III 156
Cdd:PRK06840  86 KDYPvwSSAPKIQHEIGAKNAWAFDIMAVCASFPIALKVAkDLLYSDPSIENVLLVGG---YRNSDLVDYDNprtrfMFN 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  157 FGDGAGAAVLAasEEPG---IISTHLHADGSYGELLTLPNADRVNP------ENSIH-LTMAGNEVFK-----VAVTELA 221
Cdd:PRK06840 163 FAAGGSAALLK--KDAGknrILGSAIITDGSFSEDVRVPAGGTKQPaspetvENRQHyLDVIDPESMKerldeVSIPNFL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  222 HIVDETLAANNLDRSQLDWLVP-------HQANLRiisatakKLGMSMDNVVVtLDRHGNTSAASVPCALDEAVRDGRIK 294
Cdd:PRK06840 241 KVIREALRKSGYTPKDIDYLAIlhmkrsaHIALLE-------GLGLTEEQAIY-LDEYGHLGQLDQILSLHLALEQGKLK 312
                        330       340
                 ....*....|....*....|..
gi 16129054  295 PGQLVLLEAFGGGFTWGSALVR 316
Cdd:PRK06840 313 DGDLVVLVSAGTGYTWAATVIR 334
ACP_syn_III pfam08545
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; This domain is found on 3-Oxoacyl- ...
106-183 1.48e-33

3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EC:2.3.1.180, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria.


Pssm-ID: 430064 [Multi-domain]  Cd Length: 80  Bit Score: 118.00  E-value: 1.48e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   106 FDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDGAGAAVLAASEEPG--IISTHLHADG 183
Cdd:pfam08545   1 FDINAACSGFVYALSTAAALIRSGRAKNVLVIGAETLSKILDWTDRSTAVLFGDGAGAVVLEATDEPGarILDSVLGSDG 80
PksG COG3425
3-hydroxy-3-methylglutaryl CoA synthase [Lipid transport and metabolism]; ...
37-307 8.81e-27

3-hydroxy-3-methylglutaryl CoA synthase [Lipid transport and metabolism]; 3-hydroxy-3-methylglutaryl CoA synthase is part of the Pathway/BioSystem: Isoprenoid biosynthesis


Pssm-ID: 442651 [Multi-domain]  Cd Length: 382  Bit Score: 108.34  E-value: 8.81e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  37 TGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGI-KGCPAFDVAAACAGF 115
Cdd:COG3425  37 LGQEEKSVPPPDEDAVTMAANAARRALDRAGIDPSDIGAVYVGTESGPDASKPIATYVHGALGLpPNCRAFELKFACYAG 116
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054 116 TYALSVADQYVKSGAVKYALVVGSDVlARtcdpTDRGTiiiFGD---GAGAAVLAASEEPGIISTHLHAdGSY------- 185
Cdd:COG3425 117 TAALQAALGWVASGPNKKALVIASDI-AR----YGPGS---AGEytqGAGAVAMLVGADPRIAEIEGGS-GSYttdvmdf 187
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054 186 ----GELLTLPNADRVNPENSIHLTMAGNEVFKVAvtelahivdetlaanNLDRSQLDWLVPHQANLRIISATAKKLGMS 261
Cdd:COG3425 188 wrpnGSDYPLVDGRFSEPAYLDHLEEAVKDYKEKT---------------GLKPDDFDYFVFHQPFGKMPKKAAKKLGRK 252
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 16129054 262 M---------DNVVVTLD---RHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGG 307
Cdd:COG3425 253 AgreiqedfeEQVEPSLIysrRIGNTYTGSLYLGLASLLDNAKDLPGDRIGLFSYGSG 310
BH0617 COG3424
Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport and ...
3-317 1.34e-25

Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442650 [Multi-domain]  Cd Length: 351  Bit Score: 104.45  E-value: 1.34e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   3 TKIIGTGSYLPEQVRTNADLEKMVDTSDEW----------IVTRTGIRERHIAAPNETVST-----------------MG 55
Cdd:COG3424   2 ARILSIATAVPPHRYTQEEIAEFAAELFGLderdrrrlrrLFENSGIETRHSVLPLEWYLEppsfgernalyieealeLA 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  56 FEAATRAIEMAGIEKDQIGLIVVATTSATHAfPSAACQIQSMLGIK-----------GCpafdvAAACAGftyaLSVADQ 124
Cdd:COG3424  82 EEAARRALDKAGLDPEDIDHLVTVSCTGFAA-PGLDARLINRLGLRpdvrrlpvggmGC-----AAGAAG----LRRAAD 151
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054 125 YVKSGAVKYALVVGSDVlartC------DPTDRGTII---IFGDGAGAAVLAASEEPGIiSTHLHADGSYgellTLPNAD 195
Cdd:COG3424 152 FLRADPDAVVLVVCVEL----CsltfqrDDDSKDNLVanaLFGDGAAAVVVSGDPRPGP-GPRILAFRSY----LIPDTE 222
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054 196 RVnpensihltMA---GNEVFKV--------AVTE-LAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMSMD 263
Cdd:COG3424 223 DV---------MGwdvGDTGFRMvlspevpdLIAEhLAPAVEPLLARHGLTIEDIDHWAVHPGGPKVLDAVEEALGLPPE 293
                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 16129054 264 NVVVT---LDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVRF 317
Cdd:COG3424 294 ALAHSrevLREYGNMSSATVLFVLERLLEEGAPAPGERGLAMAFGPGFTAELVLLRW 350
PRK09258 PRK09258
3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
37-307 3.45e-25

3-oxoacyl-(acyl carrier protein) synthase III; Reviewed


Pssm-ID: 181732  Cd Length: 338  Bit Score: 103.04  E-value: 3.45e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   37 TGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGI-KGCPAFDVAAACAGF 115
Cdd:PRK09258  47 TGIRERRWWPEGTQLSDGAIAAGRKALAEAGIDPSDIGLLINTSVCRDYLEPATACRVHHNLGLpKSCANFDVSNACLGF 126
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  116 TYALSVADQYVKSGAVKYALVVG----SDVLARTCD-----PTDRGTIIIF------GDGAGAAVLA-ASEEPG---IIS 176
Cdd:PRK09258 127 LNGMLDAANMIELGQIDYALVVSgesaREIVEATIDrllapETTREDFAQSfatltlGSGAAAAVLTrGSLHPRghrLLG 206
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  177 THLHADGSYGElLTLPNADRVNpENSIHLTMAGnevfkvavTELAHIV-DETLAANNLDRSQLDWLVPHQANLRIISATA 255
Cdd:PRK09258 207 GVTRAATEHHE-LCQGGRDGMR-TDAVGLLKEG--------VELAVDTwEAFLAQLGWAVEQVDRVICHQVGAAHTRAIL 276
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 16129054  256 KKLGMSMDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGG 307
Cdd:PRK09258 277 KALGIDPEKVFTTFPTLGNMGPASLPITLAMAAEEGFLKPGDRVALLGIGSG 328
CHS_like cd00831
Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, ...
10-309 5.25e-25

Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.


Pssm-ID: 238427 [Multi-domain]  Cd Length: 361  Bit Score: 103.07  E-value: 5.25e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  10 SYLPEQVRTNADLEKMVDTSD--EWIVTRTGIRERHIAAP-----------------------NETVSTMGFEAATRAIE 64
Cdd:cd00831  19 SELVDFYRRLFSSDHLPELKEklKRLCAKTGIETRYLVLPggeetyaprpemspslderndiaLEEARELAEEAARGALD 98
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  65 MAGIEKDQIGLIVVATTSATHAfPSAACQIQSMLGIKGcpafDVAA------ACAGFTYALSVADQYVKSGAVKYALVVG 138
Cdd:cd00831  99 EAGLRPSDIDHLVVNTSTGNPT-PSLDAMLINRLGLRP----DVKRynlggmGCSAGAIALDLAKDLLEANPGARVLVVS 173
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054 139 SDVLARTCDPTD-RGTII---IFGDGAGAAVLAASEEPGIISTHL-HADGSYGELLtlPNADRVNpenSIHLTMAGNEV- 212
Cdd:cd00831 174 TELCSLWYRGPDhRSMLVgnaLFGDGAAAVLLSNDPRDRRRERPLfELVRAASTLL--PDSEDAM---GWHLGEEGLTFv 248
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054 213 FKVAVTELAH-----IVDETLAANNLDRSQLD---WLVpHQANLRIISATAKKLGMSMDNVVV---TLDRHGNTSAASVP 281
Cdd:cd00831 249 LSRDVPRLVEknlerVLRKLLARLGIGLFKLAfdhWCV-HPGGRAVLDAVEKALGLSPEDLEAsrmVLRRYGNMSSSSVL 327
                       330       340
                ....*....|....*....|....*...
gi 16129054 282 CALDEAVRDGRIKPGQLVLLEAFGGGFT 309
Cdd:cd00831 328 YVLAYMEAKGRVKRGDRGLLIAFGPGFT 355
PRK04262 PRK04262
hypothetical protein; Provisional
5-307 3.15e-23

hypothetical protein; Provisional


Pssm-ID: 235266 [Multi-domain]  Cd Length: 347  Bit Score: 98.05  E-value: 3.15e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054    5 IIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSAT 84
Cdd:PRK04262   5 IVGYGAYIPRYRIKVEEIARVWGDDPEAIKRGLGVEEKSVPGPDEDTATIAVEAARNALKRAGIDPKEIGAVYVGSESHP 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   85 HAFPSAACQIQSMLGI-KGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVL-ARTCDPTDrgtiiiFGDGAG 162
Cdd:PRK04262  85 YAVKPTATIVAEALGAtPDLTAADLEFACKAGTAALQAAMGLVKSGMIKYALAIGADTAqGAPGDALE------YTAAAG 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  163 AA--VLAASEEPGIIsthlhaDGSYGelLTLPNADRVNPENSiHLTMAGNEV------FKvavtelaHI---VDETLAAN 231
Cdd:PRK04262 159 GAafIIGKEEVIAEI------EATYS--YTTDTPDFWRREGE-PYPRHGGRFtgepayFK-------HIisaAKGLMEKL 222
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 16129054  232 NLDRSQLDWLVPHQANLRIISATAKKLGMSMDNVVVTL--DRHGNTSAASVPCALdEAVRDgRIKPGQLVLLEAFGGG 307
Cdd:PRK04262 223 GLKPSDYDYAVFHQPNGKFPLRVAKMLGFTKEQVKPGLltPYIGNTYSGSALLGL-AAVLD-VAKPGDRILVVSFGSG 298
PRK06816 PRK06816
StlD/DarB family beta-ketosynthase;
5-301 3.53e-17

StlD/DarB family beta-ketosynthase;


Pssm-ID: 235866  Cd Length: 378  Bit Score: 81.11  E-value: 3.53e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054    5 IIGTGSYLPEQVRTNADLEK---MVD----TSDEWIVTRTGIRERHIA-----APNETVSTMGFEAATRAIEMAGIEKDQ 72
Cdd:PRK06816   5 ITSTGAFLPGEPVSNDEMEAylgLINgkpsRARRIILRNNGIKTRHYAldpegRPTHSNAQMAAEAIRDLLDDAGFSLGD 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   73 IGLIVVATTSATHAFPSAACQIQSMLGIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVL-----ARTCD 147
Cdd:PRK06816  85 IELLACGTSQPDQLMPGHASMVHGELGAPPIEVVSSAGVCAAGMMALKYAYLSVKAGESRNAVATASELAsrwfrASRFE 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  148 P-------TDRGTIIIF---------GDGAGAAVLAASEEPGIIS-----THL-----------------HADGSYGELL 189
Cdd:PRK06816 165 AeeeklaeLEENPEIAFekdflrwmlSDGAGAVLLENKPRPDGLSlridwIDLrsyagelpvcmyagaekNEDGSLKGWS 244
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  190 TLPNADRVNpensihltmAG-----------NEVFKVAVTE-LAHIVDEtlaaNNLDRSQLDWLVPHQANLRIISATAKK 257
Cdd:PRK06816 245 DYPPEEAEA---------ASalslkqdvrllNENIVVYTIKpLLELVDK----RNLDPDDIDYFLPHYSSEYFREKIVEL 311
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*....
gi 16129054  258 L-----GMSMDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLL 301
Cdd:PRK06816 312 LakagfMIPEEKWFTNLATVGNTGSASIYIMLDELLNSGRLKPGQKILC 360
SCP-x_thiolase cd00829
Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; ...
54-178 2.93e-11

Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.


Pssm-ID: 238425 [Multi-domain]  Cd Length: 375  Bit Score: 63.44  E-value: 2.93e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  54 MGFEAATRAIEMAGIEKDQIGLIVVATTSA--THAFPSAacQIQSMLGIKGCPAFDVAAACAGFTYALSVADQYVKSGAV 131
Cdd:cd00829  19 LAAEAARAALDDAGLEPADIDAVVVGNAAGgrFQSFPGA--LIAEYLGLLGKPATRVEAAGASGSAAVRAAAAAIASGLA 96
                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*..
gi 16129054 132 KYALVVGSDVlartcdPTDRGTIIIFGDGAGAAVLAASEEPGIISTH 178
Cdd:cd00829  97 DVVLVVGAEK------MSDVPTGDEAGGRASDLEWEGPEPPGGLTPP 137
PLN03168 PLN03168
chalcone synthase; Provisional
18-311 6.30e-08

chalcone synthase; Provisional


Pssm-ID: 178712 [Multi-domain]  Cd Length: 389  Bit Score: 53.50  E-value: 6.30e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   18 TNADLEKMVDTSDEWIVTRTGIRERHIAAPNET-------------------------VSTMGFEAATRAIEMAGIEKDQ 72
Cdd:PLN03168  43 TNCGEKEALKAKFKRICDKSGIRKRHMFLTEEVlkanpgictymepslnvrhdivvvqVPKLAAEAAQKAIKEWGGRKSD 122
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   73 IGLIVVATTSATHaFPSAACQIQSMLGIKgcPAFDVA----AACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDP 148
Cdd:PLN03168 123 ITHIVFATTSGVN-MPGADHALAKLLGLK--PTVKRVmmyqTGCFGGASVLRVAKDLAENNKGARVLAVASEVTAVTYRA 199
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  149 TDRGTI------IIFGDGAGAAVLAASEEPGiISTHLHADGSYGELLtLPNADrvnpeNSI--HLTMAG------NEVFK 214
Cdd:PLN03168 200 PSENHLdglvgsALFGDGAGVYVVGSDPKPE-VEKALFEVHWAGETI-LPESD-----GAIdgHLTEAGlifhlmKDVPG 272
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  215 VAVTELAHIVDETL-AANNLDRSQLDWLVpHQANLRIISATAKKLGMSMDNVVVTLD---RHGNTSAASVPCALDEaVRD 290
Cdd:PLN03168 273 LISKNIEKFLNEARkCVGSPDWNEMFWAV-HPGGPAILDQVEAKLKLTKDKMQGSRDilsEFGNMSSASVLFVLDQ-IRQ 350
                        330       340
                 ....*....|....*....|.
gi 16129054  291 GRIKPGQLVLLEAFGGGFTWG 311
Cdd:PLN03168 351 RSVKMGASTLGEGSEFGFFIG 371
PRK12578 PRK12578
thiolase domain-containing protein;
50-149 3.52e-05

thiolase domain-containing protein;


Pssm-ID: 183606 [Multi-domain]  Cd Length: 385  Bit Score: 44.84  E-value: 3.52e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   50 TVSTMGFEAATRAIEMAGIEKDQIGLIVVATTS--ATHAFPsaACQIQSMLGIKGCPAFDVAAACAGFTYALSVADQYVK 127
Cdd:PRK12578  20 SVQELAWESIKEALNDAGVSQTDIELVVVGSTAyrGIELYP--APIVAEYSGLTGKVPLRVEAMCATGLAASLTAYTAVA 97
                         90       100
                 ....*....|....*....|..
gi 16129054  128 SGAVKYALVVGSDVLARTCDPT 149
Cdd:PRK12578  98 SGLVDMAIAVGVDKMTEVDTST 119
FabB COG0304
3-oxoacyl-(acyl-carrier-protein) synthase [Lipid transport and metabolism, Secondary ...
54-166 6.09e-05

3-oxoacyl-(acyl-carrier-protein) synthase [Lipid transport and metabolism, Secondary metabolites biosynthesis, transport and catabolism]; 3-oxoacyl-(acyl-carrier-protein) synthase is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 440073 [Multi-domain]  Cd Length: 409  Bit Score: 44.32  E-value: 6.09e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  54 MGFEAATRAIEMAGIEKDQ-----IGLIVVATTSATHAF----------------P---------SAACQIQSMLGIKGc 103
Cdd:COG0304  74 YALAAAREALADAGLDLDEvdpdrTGVIIGSGIGGLDTLeeayrallekgprrvsPffvpmmmpnMAAGHVSIRFGLKG- 152
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054 104 PAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSD---------------VLA-RTCDPT--------DR-GTIIifG 158
Cdd:COG0304 153 PNYTVSTACASGAHAIGEAYRLIRRGRADVMIAGGAEaaitplglagfdalgALStRNDDPEkasrpfdkDRdGFVL--G 230

                ....*...
gi 16129054 159 DGAGAAVL 166
Cdd:COG0304 231 EGAGVLVL 238
PLN03173 PLN03173
chalcone synthase; Provisional
51-311 9.56e-05

chalcone synthase; Provisional


Pssm-ID: 178717 [Multi-domain]  Cd Length: 391  Bit Score: 43.53  E-value: 9.56e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   51 VSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHaFPSAACQIQSMLGIKGCPA--FDVAAACAGFTYALSVADQYVKS 128
Cdd:PLN03173 102 VPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVD-MPGADYQLTKLLGLRSSVKrfMMYQQGCFAGGTVLRLAKDLAEN 180
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  129 GAVKYALVVGSDVLARTC-DPTDR--GTII---IFGDGAGAAVLAASEEPGI---------------------ISTHLHA 181
Cdd:PLN03173 181 NKGARVLVVCSEITAVTFrGPSDThlDSLVgqaLFGDGAAAIIIGSDPVLGVekplfelvsaaqtilpdsdgaIDGHLRE 260
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  182 DGSYGELLT-LPNADRVNPENSIhltmagNEVFKVAVTElahivdetlaannlDRSQLDWlVPHQANLRIISATAKKLGM 260
Cdd:PLN03173 261 VGLTFHLLKdVPGLISKNVEKSL------TEAFKPLGIS--------------DWNSLFW-IAHPGGPAILDQVEAKLAL 319
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 16129054  261 SMDNVVVT---LDRHGNTSAASVPCALDEaVRDGRIKPGqlvlLEAFGGGFTWG 311
Cdd:PLN03173 320 KPEKLRATrhvLSEYGNMSSACVLFILDE-MRKKSAEDG----LKSTGEGLEWG 368
KAS_I_II cd00834
Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible ...
54-166 1.16e-04

Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.


Pssm-ID: 238430 [Multi-domain]  Cd Length: 406  Bit Score: 43.30  E-value: 1.16e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  54 MGFEAATRAIEMAGIEKDQ-----IGLIVVATTSATHAFP-------------------------SAACQIQSMLGIKGc 103
Cdd:cd00834  74 FALAAAEEALADAGLDPEEldperIGVVIGSGIGGLATIEeayrallekgprrvspffvpmalpnMAAGQVAIRLGLRG- 152
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054 104 PAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVL----------------ARTCDPT--------DRGTIIIfGD 159
Cdd:cd00834 153 PNYTVSTACASGAHAIGDAARLIRLGRADVVIAGGAEALitpltlagfaalralsTRNDDPEkasrpfdkDRDGFVL-GE 231

                ....*..
gi 16129054 160 GAGAAVL 166
Cdd:cd00834 232 GAGVLVL 238
PLN03171 PLN03171
chalcone synthase-like protein; Provisional
49-309 1.26e-04

chalcone synthase-like protein; Provisional


Pssm-ID: 178715 [Multi-domain]  Cd Length: 399  Bit Score: 43.45  E-value: 1.26e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   49 ETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHaFPSAACQIQSMLGIK-----------GCpafdvAAACAGFTY 117
Cdd:PLN03171 106 DAVPELAAEAAKKAIAEWGRPAADITHLVVTTNSGAH-IPGVDFRLVPLLGLRpsvrrtmlhlnGC-----FAGAAALRL 179
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  118 ALSVADQyvKSGAvkYALVVGSDVLARTCDPTDRG---TII---IFGDGAGAAVLAASEepgiisthLHADGSYGELLTL 191
Cdd:PLN03171 180 AKDLAEN--NRGA--RVLVVAAEITLLLFNGPDEGcfqTLLnqgLFGDGAAAVIVGADA--------DAAERPLFEIVSA 247
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  192 pnADRVNPENSIHLTMAGNEVFKVAVTELAHIvdETLAANNLDRSQLDWLVP-----------------HQANLRIISAT 254
Cdd:PLN03171 248 --AQAIIPESDDAINMHFTEGGLDGNIGTRQV--PGLIGDNIERCLLDAFAPllggdggaewndlfwavHPGSSAILDQV 323
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16129054  255 AKKLGMSMDNVVVT---LDRHGNTSAASVPCALDEAVRdgRIKPG-------QLVLLEAFGGGFT 309
Cdd:PLN03171 324 DAALGLEPEKLAASrrvLSDYGNMFGATVIFALDELRR--QMEEAaaagawpELGVMMAFGPGLT 386
PRK06064 PRK06064
thiolase domain-containing protein;
57-138 2.30e-04

thiolase domain-containing protein;


Pssm-ID: 235688 [Multi-domain]  Cd Length: 389  Bit Score: 42.58  E-value: 2.30e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   57 EAATRAIEMAGIEKDQIGLIVVATTSA----THAFPSAAcqIQSMLGIKGCPAFDVAAACAGFTYALSVADQYVKSGAVK 132
Cdd:PRK06064  28 EAGLEALEDAGIDGKDIDAMYVGNMSAglfvSQEHIAAL--IADYAGLAPIPATRVEAACASGGAALRQAYLAVASGEAD 105

                 ....*.
gi 16129054  133 YALVVG 138
Cdd:PRK06064 106 VVLAAG 111
PLN03172 PLN03172
chalcone synthase family protein; Provisional
51-311 3.70e-04

chalcone synthase family protein; Provisional


Pssm-ID: 178716  Cd Length: 393  Bit Score: 41.96  E-value: 3.70e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   51 VSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHaFPSAACQIQSMLGIKGCPA--FDVAAACAGFTYALSVADQYVKS 128
Cdd:PLN03172 102 VPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVD-MPGADYQLTKLLGLKPSVKrfMMYQQGCFAGGTVLRLAKDLAEN 180
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  129 GAVKYALVVGSDVLARTC-DPTDR--GTII---IFGDGAGAAVLAASEEPGIisthlhaDGSYGELLTLPNADRVNPENS 202
Cdd:PLN03172 181 NAGSRVLVVCSEITAVTFrGPSDThlDSLVgqaLFGDGAAAVIIGADPDTKI-------ERPLFEIVSAAQTILPDSDGA 253
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  203 I--HLTMAGNEVfkvavtelaHIVDET--LAANNLDRSQLDWLVP-------------HQANLRIISATAKKLGMSMDNV 265
Cdd:PLN03172 254 IdgHLREVGLTF---------HLLKDVpgLISKNIEKSLVEAFAPigindwnsifwiaHPGGPAILDQVEIKLDLKEEKL 324
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 16129054  266 VVT---LDRHGNTSAASVPCALDEaVRDGRIKPGQlvllEAFGGGFTWG 311
Cdd:PLN03172 325 RATrhvLSDYGNMSSACVLFILDE-MRKKSIEEGK----GSTGEGLEWG 368
ketoacyl-synt pfam00109
Beta-ketoacyl synthase, N-terminal domain; The structure of beta-ketoacyl synthase is similar ...
52-166 7.11e-04

Beta-ketoacyl synthase, N-terminal domain; The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains most of the structures involved in dimer formation and also the active site cysteine.


Pssm-ID: 425468 [Multi-domain]  Cd Length: 251  Bit Score: 40.31  E-value: 7.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054    52 STMGFEAATRAIEMAGIEKDQIGLIVVATTSAthafpsAACQIQSMLGIKGcPAFDVAAACAGFTYALSVADQYVKSGAV 131
Cdd:pfam00109 120 SGIGDYAALLLLDEDGGPRRGSPFAVGTMPSV------IAGRISYFLGLRG-PSVTVDTACSSSLVAIHAAVQSIRSGEA 192
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 16129054   132 KYALVVGSDVLA--------------------RTCDPTDRGTiiIFGDGAGAAVL 166
Cdd:pfam00109 193 DVALAGGVNLLLtplgfagfsaagmlspdgpcKAFDPFADGF--VRGEGVGAVVL 245
elong_cond_enzymes cd00828
"elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, ...
30-140 7.20e-04

"elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.


Pssm-ID: 238424 [Multi-domain]  Cd Length: 407  Bit Score: 40.89  E-value: 7.20e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  30 DEWIVTRTGIRERhiaapnetVSTMGFEAATRAIEMAGIEKDQI------GLIV-----------------------VAT 80
Cdd:cd00828  59 PGWDAKRTGIVDR--------TTLLALVATEEALADAGITDPYEvhpsevGVVVgsgmgglrflrrggkldaravnpYVS 130
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  81 TSATHAFPSAACQIQSMLGIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSD 140
Cdd:cd00828 131 PKWMLSPNTVAGWVNILLLSSHGPIKTPVGACATALEALDLAVEAIRSGKADIVVVGGVE 190
PRK07516 PRK07516
thiolase domain-containing protein;
49-138 1.32e-03

thiolase domain-containing protein;


Pssm-ID: 181013 [Multi-domain]  Cd Length: 389  Bit Score: 39.93  E-value: 1.32e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   49 ETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSA---THAFPSA-ACQIQSMLGIKgcPAFDVAAACAGFTYALSVADQ 124
Cdd:PRK07516  20 ETLESLIVRVAREALAHAGIAAGDVDGIFLGHFNAgfsPQDFPASlVLQADPALRFK--PATRVENACATGSAAVYAALD 97
                         90
                 ....*....|....
gi 16129054  125 YVKSGAVKYALVVG 138
Cdd:PRK07516  98 AIEAGRARIVLVVG 111
PRK06059 PRK06059
lipid-transfer protein; Provisional
49-140 2.19e-03

lipid-transfer protein; Provisional


Pssm-ID: 180373 [Multi-domain]  Cd Length: 399  Bit Score: 39.36  E-value: 2.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   49 ETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTsATHAFPS--AACQIQSMLGIKGCPAFDVAAACAGFTYALSVADQYV 126
Cdd:PRK06059  21 RDFVEYGVVAARAALADAGLDWRDVQLVVGADT-IRNGYPGfvAGATFAQALGWNGAPVSSSYAACASGSQALQSARAQI 99
                         90
                 ....*....|....
gi 16129054  127 KSGAVKYALVVGSD 140
Cdd:PRK06059 100 LAGLCDVALVVGAD 113
PLN02192 PLN02192
3-ketoacyl-CoA synthase
206-316 2.35e-03

3-ketoacyl-CoA synthase


Pssm-ID: 215123  Cd Length: 511  Bit Score: 39.57  E-value: 2.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  206 TMAGNEVFKVAVTelAHIVDETLAannldrsqLDWLVPHQANLRIISATAKKLGMS---MDNVVVTLDRHGNTSAASVPC 282
Cdd:PLN02192 377 TLVGKKLFKMKLK--PYIPDFKLA--------FEHFCIHAGGRAVLDELEKNLQLSdwhMEPSRMTLYRFGNTSSSSLWY 446
                         90       100       110
                 ....*....|....*....|....*....|....
gi 16129054  283 ALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVR 316
Cdd:PLN02192 447 ELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWK 480
PLN02377 PLN02377
3-ketoacyl-CoA synthase
44-314 3.91e-03

3-ketoacyl-CoA synthase


Pssm-ID: 166018  Cd Length: 502  Bit Score: 38.85  E-value: 3.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   44 IAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVaTTSATHAFPSAACQIQSMLGIKG-CPAFDVAA-ACAGFTYALSV 121
Cdd:PLN02377 165 MAAAREEAEQVMFGALDNLFANTNVNPKDIGILVV-NCSLFNPTPSLSAMIVNKYKLRGnIRSFNLGGmGCSAGVIAVDL 243
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  122 ADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIII----FGDGaGAAVLAASEEPG----------IISTHLHADGS--- 184
Cdd:PLN02377 244 AKDMLQVHRNTYAVVVSTENITQNWYFGNKKSMLIpnclFRVG-GSAVLLSNKSRDkrrskyklvhVVRTHRGADDKafr 322
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  185 --YGELltlPNADRVNPENSIHLTMAGNEVFKVAVTELAHIV---------DETLAANNLDRSQLDWLVP---------- 243
Cdd:PLN02377 323 cvYQEQ---DDAGKTGVSLSKDLMAIAGEALKTNITTLGPLVlpiseqllfFATLVVKKLFNKKMKPYIPdfklafdhfc 399
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16129054  244 -HQANLRIISATAKKLGMSMDNVV---VTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSAL 314
Cdd:PLN02377 400 iHAGGRAVIDELEKNLQLLPVHVEasrMTLHRFGNTSSSSIWYELAYIEAKGRMRKGNRVWQIAFGSGFKCNSAV 474
PLN03170 PLN03170
chalcone synthase; Provisional
51-311 4.34e-03

chalcone synthase; Provisional


Pssm-ID: 178714 [Multi-domain]  Cd Length: 401  Bit Score: 38.54  E-value: 4.34e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   51 VSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHaFPSAACQIQSMLGIKgcPAFD----VAAACAGFTYALSVADQYV 126
Cdd:PLN03170 106 VPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVD-MPGADYQLTKMLGLR--PSVNrlmmYQQGCFAGGTVLRVAKDLA 182
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  127 KSGAVKYALVVGSDVLARTCDPTDRGTI------IIFGDGAGAAVLAAS-----EEP----------------GIISTHL 179
Cdd:PLN03170 183 ENNRGARVLVVCSEITAVTFRGPSESHLdsmvgqALFGDGAAAVIVGADpdervERPlfqlvsasqtilpdseGAIDGHL 262
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054  180 HADGSYGELLT-LPNADRVNPENSIhltmagNEVFK-VAVTelahivdetlaannlDRSQLDWlVPHQANLRIISATAKK 257
Cdd:PLN03170 263 REVGLTFHLLKdVPGLISKNIERSL------EEAFKpLGIT---------------DYNSIFW-VAHPGGPAILDQVEAK 320
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 16129054  258 LGMSMDNVVVT---LDRHGNTSAASVPCALDEaVRDGRIKPGQLVLleafGGGFTWG 311
Cdd:PLN03170 321 VGLEKERMRATrhvLSEYGNMSSACVLFILDE-MRKRSAEDGQATT----GEGFDWG 372
PRK12404 PRK12404
stage V sporulation protein AD; Provisional
57-171 4.50e-03

stage V sporulation protein AD; Provisional


Pssm-ID: 183504  Cd Length: 334  Bit Score: 38.44  E-value: 4.50e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054   57 EAATRAIEMAGIEKDQIGLIVVA------TTSathafpSAACqiqSMLGIkgcPAFDVAAACAGFTYALSVADQYVKSGA 130
Cdd:PRK12404  60 EACSRAIEKAKLRKEDIQFFLAGdlmnqiTPT------SFAA---RTLGI---PYLGLFGACSTSMEGLALAALIVNSGG 127
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 16129054  131 VKYalvvgsdVLARTCD-----------PTDRG---------TIIifgdGAGAAVLAASEE 171
Cdd:PRK12404 128 AKY-------VLTGASShnaavekqfryPTEYGgqkpptaqwTVT----GAGAAILSKTGD 177
HMG_CoA_synt_N pfam01154
Hydroxymethylglutaryl-coenzyme A synthase N terminal;
5-141 7.38e-03

Hydroxymethylglutaryl-coenzyme A synthase N terminal;


Pssm-ID: 307348 [Multi-domain]  Cd Length: 173  Bit Score: 36.83  E-value: 7.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16129054     5 IIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSAT 84
Cdd:pfam01154   6 ILALEIYFPAQYVDQTELEKFDGVEAGKYTIGLGQTRMGFCSDREDINSLCLTVVQKLMERYNLPWDKIGRLEVGTETII 85
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16129054    85 HAFPSAACQIQSMLGIKG---CPAFDVAAACAGFTYALSVADQYVKSGAV--KYALVVGSDV 141
Cdd:pfam01154  86 DKSKSVKSVLMQLFQESGntdIEGIDTTNACYGGTAALFNAANWIESSSWdgRYALVVCGDI 147
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH