NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|16128759|ref|NP_415312|]
View 

inner membrane protein YbhQ [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

YbhQ family protein( domain architecture ID 10567428)

YbhQ family protein similar to putative inner membrane protein YbhQ

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
YbhQ pfam11076
Putative inner membrane protein YbhQ; This family is conserved in Proteobacteria. The function ...
1-132 9.94e-62

Putative inner membrane protein YbhQ; This family is conserved in Proteobacteria. The function is not known but most members are annotated as being inner membrane protein YbhQ.


:

Pssm-ID: 431643  Cd Length: 132  Bit Score: 185.44  E-value: 9.94e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128759     1 MKWQQRVRVATGLSCWQIMLHLLVVALLVVGWMSKTLVHVGVGLCALYCVTVVMMLVFQRHPEQRWREVADVLEELTTTW 80
Cdd:pfam11076   1 MKWQQRVRVATGLSCWQIMLHLLVVALLVWGWMHKALVRVGLGLCVLYAVTLIAMLILQRHPEARWRELGDYLEELTTTW 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 16128759    81 YFGAALIVLWLLSRVLENNFLLAIAGLAILAGPAVVSLLAKDKKLHHLTSKH 132
Cdd:pfam11076  81 YFGAAMIALWLLSRVLHNNLLLALAGLVILAGPALVSLLAKEKARRNLAPKH 132
 
Name Accession Description Interval E-value
YbhQ pfam11076
Putative inner membrane protein YbhQ; This family is conserved in Proteobacteria. The function ...
1-132 9.94e-62

Putative inner membrane protein YbhQ; This family is conserved in Proteobacteria. The function is not known but most members are annotated as being inner membrane protein YbhQ.


Pssm-ID: 431643  Cd Length: 132  Bit Score: 185.44  E-value: 9.94e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128759     1 MKWQQRVRVATGLSCWQIMLHLLVVALLVVGWMSKTLVHVGVGLCALYCVTVVMMLVFQRHPEQRWREVADVLEELTTTW 80
Cdd:pfam11076   1 MKWQQRVRVATGLSCWQIMLHLLVVALLVWGWMHKALVRVGLGLCVLYAVTLIAMLILQRHPEARWRELGDYLEELTTTW 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 16128759    81 YFGAALIVLWLLSRVLENNFLLAIAGLAILAGPAVVSLLAKDKKLHHLTSKH 132
Cdd:pfam11076  81 YFGAAMIALWLLSRVLHNNLLLALAGLVILAGPALVSLLAKEKARRNLAPKH 132
 
Name Accession Description Interval E-value
YbhQ pfam11076
Putative inner membrane protein YbhQ; This family is conserved in Proteobacteria. The function ...
1-132 9.94e-62

Putative inner membrane protein YbhQ; This family is conserved in Proteobacteria. The function is not known but most members are annotated as being inner membrane protein YbhQ.


Pssm-ID: 431643  Cd Length: 132  Bit Score: 185.44  E-value: 9.94e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128759     1 MKWQQRVRVATGLSCWQIMLHLLVVALLVVGWMSKTLVHVGVGLCALYCVTVVMMLVFQRHPEQRWREVADVLEELTTTW 80
Cdd:pfam11076   1 MKWQQRVRVATGLSCWQIMLHLLVVALLVWGWMHKALVRVGLGLCVLYAVTLIAMLILQRHPEARWRELGDYLEELTTTW 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 16128759    81 YFGAALIVLWLLSRVLENNFLLAIAGLAILAGPAVVSLLAKDKKLHHLTSKH 132
Cdd:pfam11076  81 YFGAAMIALWLLSRVLHNNLLLALAGLVILAGPALVSLLAKEKARRNLAPKH 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH