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Conserved domains on  [gi|16128314|ref|NP_414863|]
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DUF1471 domain-containing protein YahO [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

DUF1471 domain-containing protein( domain architecture ID 10013378)

DUF1471 domain-containing protein similar to Escherichia coli protein YahO

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK09929 PRK09929
hypothetical protein; Provisional
 1-91 4.00e-45

hypothetical protein; Provisional


:

Pssm-ID: 182151  Cd Length: 91  Bit Score: 140.05  E-value: 4.00e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128314   1 MKIISKMLVGALALAVTNVYAAELMTKAEFEKVESQYEKIGDISTSNEMSTADAKEDLIKKADEKGADVLVLTSGQTDNK 80
Cdd:PRK09929  1 MKIISKMLLGALAFAVTNVYAAELMTKAEFEKVESQYEKIGTISTSNEMSTADAKEDLIKKADEKGADVLVLTSGQTDNK 80

                        90
                ....*....|.
gi 16128314  81 IHGTANIYKKK 91
Cdd:PRK09929 81 IHGTADIYKKK 91
 
Name Accession Description Interval E-value
PRK09929 PRK09929
hypothetical protein; Provisional
 1-91 4.00e-45

hypothetical protein; Provisional


Pssm-ID: 182151  Cd Length: 91  Bit Score: 140.05  E-value: 4.00e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128314   1 MKIISKMLVGALALAVTNVYAAELMTKAEFEKVESQYEKIGDISTSNEMSTADAKEDLIKKADEKGADVLVLTSGQTDNK 80
Cdd:PRK09929  1 MKIISKMLLGALAFAVTNVYAAELMTKAEFEKVESQYEKIGTISTSNEMSTADAKEDLIKKADEKGADVLVLTSGQTDNK 80

                        90
                ....*....|.
gi 16128314  81 IHGTANIYKKK 91
Cdd:PRK09929 81 IHGTADIYKKK 91
YdgH_BhsA-like pfam07338
YdgH/BhsA/McbA-like domain; This domain is found in several Enterobacterial proteins of around ...
 37-88 3.48e-09

YdgH/BhsA/McbA-like domain; This domain is found in several Enterobacterial proteins of around 90 residues in length, including E. coli YdgH, YhcN, BhsA and McbA, which play a role in stress response, biofilm formation and pathogenesis. BhsA (also known as ComC) reduces the permeability of the outer membrane to copper and may decrease biofilm formation by repressing cell-cell interaction and cell surface interaction. Members of this entry have one copy of this domain with the exception of YdgH, which has three copies. The function of this domain is unknown, however, it is suggested to be directly involved in host-pathogen interaction.


Pssm-ID: 429417 [Multi-domain]  Cd Length: 55  Bit Score: 47.90  E-value: 3.48e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 16128314   37 YEKIGDISTSNEMST-ADAKEDLIKKADEKGAD--VLVLTSGQTDNKIHGTANIY 88
Cdd:pfam07338  1 LQPIGTVSVSGVFGSpSDAEAALSKKADAKGAKsyRIISADEPNGGNWHGTAELY 55
 
Name Accession Description Interval E-value
PRK09929 PRK09929
hypothetical protein; Provisional
 1-91 4.00e-45

hypothetical protein; Provisional


Pssm-ID: 182151  Cd Length: 91  Bit Score: 140.05  E-value: 4.00e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128314   1 MKIISKMLVGALALAVTNVYAAELMTKAEFEKVESQYEKIGDISTSNEMSTADAKEDLIKKADEKGADVLVLTSGQTDNK 80
Cdd:PRK09929  1 MKIISKMLLGALAFAVTNVYAAELMTKAEFEKVESQYEKIGTISTSNEMSTADAKEDLIKKADEKGADVLVLTSGQTDNK 80

                        90
                ....*....|.
gi 16128314  81 IHGTANIYKKK 91
Cdd:PRK09929 81 IHGTADIYKKK 91
YdgH_BhsA-like pfam07338
YdgH/BhsA/McbA-like domain; This domain is found in several Enterobacterial proteins of around ...
 37-88 3.48e-09

YdgH/BhsA/McbA-like domain; This domain is found in several Enterobacterial proteins of around 90 residues in length, including E. coli YdgH, YhcN, BhsA and McbA, which play a role in stress response, biofilm formation and pathogenesis. BhsA (also known as ComC) reduces the permeability of the outer membrane to copper and may decrease biofilm formation by repressing cell-cell interaction and cell surface interaction. Members of this entry have one copy of this domain with the exception of YdgH, which has three copies. The function of this domain is unknown, however, it is suggested to be directly involved in host-pathogen interaction.


Pssm-ID: 429417 [Multi-domain]  Cd Length: 55  Bit Score: 47.90  E-value: 3.48e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 16128314   37 YEKIGDISTSNEMST-ADAKEDLIKKADEKGAD--VLVLTSGQTDNKIHGTANIY 88
Cdd:pfam07338  1 LQPIGTVSVSGVFGSpSDAEAALSKKADAKGAKsyRIISADEPNGGNWHGTAELY 55
PRK10259 PRK10259
hypothetical protein; Provisional
 1-89 8.70e-04

hypothetical protein; Provisional


Pssm-ID: 137782  Cd Length: 86  Bit Score: 35.08  E-value: 8.70e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128314   1 MKIIsKMLVGALALAVTN--VYAAELMTKAEFEKVEsqyeKIGDISTSNEMSTADAKEDLIKKADEKGADVLVLTSGQTD 78
Cdd:PRK10259  1 MKTI-NTVVAAMALSTLSfgVFAAEPVTASQAQNMN----KIGVVSADGASTLDALEAKLAEKAAAAGASGYSITSATNN 75

                        90
                ....*....|.
gi 16128314  79 NKIHGTANIYK 89
Cdd:PRK10259 76 NKLSGTAVIYK 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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