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Conserved domains on  [gi|38704164|ref|NP_312261|]
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DNA catabolic protein [Escherichia coli O157:H7 str. Sakai]

Protein Classification

DUF2531 family protein( domain architecture ID 10566649)

DUF2531 family protein similar to DNA utilization protein HofP, which is required for the use of extracellular DNA as a nutrient

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HofP pfam10748
DNA utilization proteins HofP; This family includes the Escherischia coli protein HofP, one of ...
 3-134 1.86e-87

DNA utilization proteins HofP; This family includes the Escherischia coli protein HofP, one of eight genes shown to be required for the utilization of extracellular DNA as a nutrient source in starving conditions, allowing DNA to be the sole source for carbon and energy. Proteins in this entry appear are found only in Enterobacteriaceae.


:

Pssm-ID: 402399  Cd Length: 132  Bit Score: 250.28  E-value: 1.86e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704164     3 VKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMVGRGERIIGVIKDGQKKWRRVQQNDVLENGWTILQLTLD 82
Cdd:pfam10748   1 VKRWLLACICLLMLTGMRDPFKPPEDRCRIAELSQWRYQGMVGRGERITGILKDSQQKWRRVEQNQVLENGWTILRLTAD 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 38704164    83 VLTLGTGTNCEPPQWLWQRQGDTNEAMDSRTTVDADTRRTGGKAAKSDADGG 134
Cdd:pfam10748  81 VLTLGTGKNCEPPQWRWQRQGDTNEAMDSRTTDDADARRTGGKSAKSDADGG 132
 
Name Accession Description Interval E-value
HofP pfam10748
DNA utilization proteins HofP; This family includes the Escherischia coli protein HofP, one of ...
 3-134 1.86e-87

DNA utilization proteins HofP; This family includes the Escherischia coli protein HofP, one of eight genes shown to be required for the utilization of extracellular DNA as a nutrient source in starving conditions, allowing DNA to be the sole source for carbon and energy. Proteins in this entry appear are found only in Enterobacteriaceae.


Pssm-ID: 402399  Cd Length: 132  Bit Score: 250.28  E-value: 1.86e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704164     3 VKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMVGRGERIIGVIKDGQKKWRRVQQNDVLENGWTILQLTLD 82
Cdd:pfam10748   1 VKRWLLACICLLMLTGMRDPFKPPEDRCRIAELSQWRYQGMVGRGERITGILKDSQQKWRRVEQNQVLENGWTILRLTAD 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 38704164    83 VLTLGTGTNCEPPQWLWQRQGDTNEAMDSRTTVDADTRRTGGKAAKSDADGG 134
Cdd:pfam10748  81 VLTLGTGKNCEPPQWRWQRQGDTNEAMDSRTTDDADARRTGGKSAKSDADGG 132
 
Name Accession Description Interval E-value
HofP pfam10748
DNA utilization proteins HofP; This family includes the Escherischia coli protein HofP, one of ...
 3-134 1.86e-87

DNA utilization proteins HofP; This family includes the Escherischia coli protein HofP, one of eight genes shown to be required for the utilization of extracellular DNA as a nutrient source in starving conditions, allowing DNA to be the sole source for carbon and energy. Proteins in this entry appear are found only in Enterobacteriaceae.


Pssm-ID: 402399  Cd Length: 132  Bit Score: 250.28  E-value: 1.86e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38704164     3 VKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMVGRGERIIGVIKDGQKKWRRVQQNDVLENGWTILQLTLD 82
Cdd:pfam10748   1 VKRWLLACICLLMLTGMRDPFKPPEDRCRIAELSQWRYQGMVGRGERITGILKDSQQKWRRVEQNQVLENGWTILRLTAD 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 38704164    83 VLTLGTGTNCEPPQWLWQRQGDTNEAMDSRTTVDADTRRTGGKAAKSDADGG 134
Cdd:pfam10748  81 VLTLGTGKNCEPPQWRWQRQGDTNEAMDSRTTDDADARRTGGKSAKSDADGG 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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