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Conserved domains on  [gi|1447699691|ref|NP_311394|]
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outer membrane integrity lipoprotein [Escherichia coli O157:H7 str. Sakai]

Protein Classification

SlyB family protein( domain architecture ID 10006953)

SlyB family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SlyB COG3133
Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis];
4-164 4.87e-17

Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442367  Cd Length: 152  Bit Score: 73.32  E-value: 4.87e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699691   4 KKCLLPVAMLASFTLAGCqsNADDHAADVYQTDQLNTKQETKTVNIISILPAKVAVDNSqnkrnaqAFGALIGAVAGGVI 83
Cdd:COG3133     2 KKLLLAAALLAALLLAGC--ANSSYSGDVYSRGQARQVQTVEYGTVVSVRPVTIQGSNS-------GLGTVGGAVLGGVA 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699691  84 GHNVGSGSNSGTTAGAVGGG--AVGAAAGSMVNDKTLVEgvsLTYK-EGTKVYTSTQvGKECQFTTGLAVVITTTYNETR 160
Cdd:COG3133    73 GSQVGGGRGRALATVAGAVAggVAGNAIEKGVTRTQGVE---ITVRlDNGETIAVVQ-EADPQFRVGQRVRVVGGGGTTR 148


                  ....
gi 1447699691 161 IQPN 164
Cdd:COG3133   149 VSPR 152
 
Name Accession Description Interval E-value
SlyB COG3133
Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis];
4-164 4.87e-17

Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442367  Cd Length: 152  Bit Score: 73.32  E-value: 4.87e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699691   4 KKCLLPVAMLASFTLAGCqsNADDHAADVYQTDQLNTKQETKTVNIISILPAKVAVDNSqnkrnaqAFGALIGAVAGGVI 83
Cdd:COG3133     2 KKLLLAAALLAALLLAGC--ANSSYSGDVYSRGQARQVQTVEYGTVVSVRPVTIQGSNS-------GLGTVGGAVLGGVA 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699691  84 GHNVGSGSNSGTTAGAVGGG--AVGAAAGSMVNDKTLVEgvsLTYK-EGTKVYTSTQvGKECQFTTGLAVVITTTYNETR 160
Cdd:COG3133    73 GSQVGGGRGRALATVAGAVAggVAGNAIEKGVTRTQGVE---ITVRlDNGETIAVVQ-EADPQFRVGQRVRVVGGGGTTR 148


                  ....
gi 1447699691 161 IQPN 164
Cdd:COG3133   149 VSPR 152
Rick_17kDa_Anti pfam05433
Glycine zipper 2TM domain; This family includes a putative two transmembrane alpha-helical ...
 72-92 2.90e-03

Glycine zipper 2TM domain; This family includes a putative two transmembrane alpha-helical region that contains glycine zipper motifs. This family includes several Rickettsia genus specific 17 kDa surface antigen proteins.


Pssm-ID: 428470 [Multi-domain]  Cd Length: 43  Bit Score: 33.97  E-value: 2.90e-03
                          10        20
                  ....*....|....*....|.
gi 1447699691  72 GALIGAVAGGVIGHNVGSGSN 92
Cdd:pfam05433   2 GALVGAAAGGVAGAAIGGGGN 22
PRK11280 PRK11280
hypothetical protein; Provisional
 72-91 8.89e-03

hypothetical protein; Provisional


Pssm-ID: 183072 [Multi-domain]  Cd Length: 170  Bit Score: 34.99  E-value: 8.89e-03
                          10        20
                  ....*....|....*....|
gi 1447699691  72 GALIGAVAGGVIGHNVGSGS 91
Cdd:PRK11280   67 GSVLGAVAGGVLGHQFGGGR 86
 
Name Accession Description Interval E-value
SlyB COG3133
Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis];
4-164 4.87e-17

Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442367  Cd Length: 152  Bit Score: 73.32  E-value: 4.87e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699691   4 KKCLLPVAMLASFTLAGCqsNADDHAADVYQTDQLNTKQETKTVNIISILPAKVAVDNSqnkrnaqAFGALIGAVAGGVI 83
Cdd:COG3133     2 KKLLLAAALLAALLLAGC--ANSSYSGDVYSRGQARQVQTVEYGTVVSVRPVTIQGSNS-------GLGTVGGAVLGGVA 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699691  84 GHNVGSGSNSGTTAGAVGGG--AVGAAAGSMVNDKTLVEgvsLTYK-EGTKVYTSTQvGKECQFTTGLAVVITTTYNETR 160
Cdd:COG3133    73 GSQVGGGRGRALATVAGAVAggVAGNAIEKGVTRTQGVE---ITVRlDNGETIAVVQ-EADPQFRVGQRVRVVGGGGTTR 148


                  ....
gi 1447699691 161 IQPN 164
Cdd:COG3133   149 VSPR 152
YcfJ COG3134
Uncharacterized conserved protein YcfJ, contains glycine zipper 2TM domain [Function unknown];
4-92 2.51e-06

Uncharacterized conserved protein YcfJ, contains glycine zipper 2TM domain [Function unknown];


Pssm-ID: 442368 [Multi-domain]  Cd Length: 176  Bit Score: 45.28  E-value: 2.51e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699691   4 KKCLLPVAMLASFTLAGCQSNADDHAADVYQT--DQLNTKQETKTVNIisilPAKVAVD-----NSQNKRNAQAFGALIG 76
Cdd:COG3134     2 KKSLLVGAVLAALAAAGAAAAAGYAAADSFPDyaRVVSVTPIYETVRT----PRQECWDetvteRAPVQDGNSIAGTVIG 77

                          90
                  ....*....|....*.
gi 1447699691  77 AVAGGVIGHNVGSGSN 92
Cdd:COG3134    78 AIAGGVLGNQVGGGSG 93
Rick_17kDa_Anti pfam05433
Glycine zipper 2TM domain; This family includes a putative two transmembrane alpha-helical ...
 72-92 2.90e-03

Glycine zipper 2TM domain; This family includes a putative two transmembrane alpha-helical region that contains glycine zipper motifs. This family includes several Rickettsia genus specific 17 kDa surface antigen proteins.


Pssm-ID: 428470 [Multi-domain]  Cd Length: 43  Bit Score: 33.97  E-value: 2.90e-03
                          10        20
                  ....*....|....*....|.
gi 1447699691  72 GALIGAVAGGVIGHNVGSGSN 92
Cdd:pfam05433   2 GALVGAAAGGVAGAAIGGGGN 22
PRK11280 PRK11280
hypothetical protein; Provisional
 72-91 8.89e-03

hypothetical protein; Provisional


Pssm-ID: 183072 [Multi-domain]  Cd Length: 170  Bit Score: 34.99  E-value: 8.89e-03
                          10        20
                  ....*....|....*....|
gi 1447699691  72 GALIGAVAGGVIGHNVGSGS 91
Cdd:PRK11280   67 GSVLGAVAGGVLGHQFGGGR 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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