NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15832221|ref|NP_310994|]
View 

phage antirepressor [Escherichia coli O157:H7 str. Sakai]

Protein Classification

phage antirepressor N-terminal domain-containing protein( domain architecture ID 10565717)

phage antirepressor N-terminal domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
P22_AR_N pfam10547
P22_AR N-terminal domain; This domain was identified by Iyer and colleagues.
 6-111 3.36e-57

P22_AR N-terminal domain; This domain was identified by Iyer and colleagues.


:

Pssm-ID: 431351  Cd Length: 110  Bit Score: 175.55  E-value: 3.36e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832221     6 VPFHGNSLYVVNHNGEPYVPMKPVVAGMGLAWQSQLAKLRQ--RFASTITEIVMVAEDGKQRNMVSMPLRKLAGWLQTIN 83
Cdd:pfam10547   3 VPFHGDELLTVEEDGKPYVAMKPIVEAMGLDWSSQHRKLKNddKFSSVVIEITTVGSDGKIREMLCLPLRKLPGWLFTIN 82

                          90       100
                  ....*....|....*....|....*...
gi 15832221    84 PNKVKPEIRDKVIRYQEECDDVLYEYWT 111
Cdd:pfam10547  83 PNKVRPELRDKVIAYQNECDDALWDYWT 110
ORF11CD3 super family cl11180
ORF11CD3 domain; This domain was identified by Iyer and colleagues.
 124-173 8.15e-12

ORF11CD3 domain; This domain was identified by Iyer and colleagues.


The actual alignment was detected with superfamily member pfam10549:

Pssm-ID: 287514  Cd Length: 52  Bit Score: 57.46  E-value: 8.15e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15832221   124 MEELNQACADMKRDKNIASVFATGLNEWKQVKAAHVSKIRTLVNEANMLI 173
Cdd:pfam10549   2 MHEFNEACIELKKQKRIASLAGRGLNEWKQVKPQLTQKVESLEEKLQPTL 51
 
Name Accession Description Interval E-value
P22_AR_N pfam10547
P22_AR N-terminal domain; This domain was identified by Iyer and colleagues.
 6-111 3.36e-57

P22_AR N-terminal domain; This domain was identified by Iyer and colleagues.


Pssm-ID: 431351  Cd Length: 110  Bit Score: 175.55  E-value: 3.36e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832221     6 VPFHGNSLYVVNHNGEPYVPMKPVVAGMGLAWQSQLAKLRQ--RFASTITEIVMVAEDGKQRNMVSMPLRKLAGWLQTIN 83
Cdd:pfam10547   3 VPFHGDELLTVEEDGKPYVAMKPIVEAMGLDWSSQHRKLKNddKFSSVVIEITTVGSDGKIREMLCLPLRKLPGWLFTIN 82

                          90       100
                  ....*....|....*....|....*...
gi 15832221    84 PNKVKPEIRDKVIRYQEECDDVLYEYWT 111
Cdd:pfam10547  83 PNKVRPELRDKVIAYQNECDDALWDYWT 110
ORF11CD3 pfam10549
ORF11CD3 domain; This domain was identified by Iyer and colleagues.
 124-173 8.15e-12

ORF11CD3 domain; This domain was identified by Iyer and colleagues.


Pssm-ID: 287514  Cd Length: 52  Bit Score: 57.46  E-value: 8.15e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15832221   124 MEELNQACADMKRDKNIASVFATGLNEWKQVKAAHVSKIRTLVNEANMLI 173
Cdd:pfam10549   2 MHEFNEACIELKKQKRIASLAGRGLNEWKQVKPQLTQKVESLEEKLQPTL 51
 
Name Accession Description Interval E-value
P22_AR_N pfam10547
P22_AR N-terminal domain; This domain was identified by Iyer and colleagues.
 6-111 3.36e-57

P22_AR N-terminal domain; This domain was identified by Iyer and colleagues.


Pssm-ID: 431351  Cd Length: 110  Bit Score: 175.55  E-value: 3.36e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832221     6 VPFHGNSLYVVNHNGEPYVPMKPVVAGMGLAWQSQLAKLRQ--RFASTITEIVMVAEDGKQRNMVSMPLRKLAGWLQTIN 83
Cdd:pfam10547   3 VPFHGDELLTVEEDGKPYVAMKPIVEAMGLDWSSQHRKLKNddKFSSVVIEITTVGSDGKIREMLCLPLRKLPGWLFTIN 82

                          90       100
                  ....*....|....*....|....*...
gi 15832221    84 PNKVKPEIRDKVIRYQEECDDVLYEYWT 111
Cdd:pfam10547  83 PNKVRPELRDKVIAYQNECDDALWDYWT 110
ORF11CD3 pfam10549
ORF11CD3 domain; This domain was identified by Iyer and colleagues.
 124-173 8.15e-12

ORF11CD3 domain; This domain was identified by Iyer and colleagues.


Pssm-ID: 287514  Cd Length: 52  Bit Score: 57.46  E-value: 8.15e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15832221   124 MEELNQACADMKRDKNIASVFATGLNEWKQVKAAHVSKIRTLVNEANMLI 173
Cdd:pfam10549   2 MHEFNEACIELKKQKRIASLAGRGLNEWKQVKPQLTQKVESLEEKLQPTL 51
FtsQ_DivIB_C pfam03799
Cell division protein FtsQ/DivIB, C-terminal; FtsQ is an essential cell division protein. It ...
 9-62 3.50e-03

Cell division protein FtsQ/DivIB, C-terminal; FtsQ is an essential cell division protein. It may link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. FtsQ may control the correct divisome assembly. DivIB is a cell division protein from Gram-positive bacteria, probably homologous to Escherichia coli FtsQ. DivIB interacts with FtsL, DivIC and PBP-2B. DivIB plays an essential role in division at high temperatures, maybe by protecting FtsL from degradation or by promoting formation of the FtsL-DivIC complex. It is also required for efficient sporulation at all temperatures. FtsQ and DivIB have a short N-terminal cytoplasmic domain and a larger C-terminal periplasmic domain. This entry represents the C-terminal region.


Pssm-ID: 461056  Cd Length: 113  Bit Score: 35.85  E-value: 3.50e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15832221     9 HGNSLYVVNHNGEPYVPMK-----PVVAGMGLAWQS---QLAKLRQRFASTITEIVMVAEDG 62
Cdd:pfam03799   5 QGGYLYLVDADGEVFEAFAdnaglPVLTGPEGSAKEvlaLLAALPPELKPRISEISLSARRR 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH