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Conserved domains on  [gi|15600371|ref|NP_253865|]
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hypothetical protein PA5178 [Pseudomonas aeruginosa PAO1]

Protein Classification

LysM and BON domain-containing protein( domain architecture ID 11485265)

LysM and BON domain-containing protein similar to Escherichia coli potassium binding protein Kbp (YgaU), a highly specific potassium binding protein that is required for normal growth in the presence of high levels of external K(+)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK11198 PRK11198
LysM domain/BON superfamily protein; Provisional
 1-145 9.53e-85

LysM domain/BON superfamily protein; Provisional


:

Pssm-ID: 236880 [Multi-domain]  Cd Length: 147  Bit Score: 244.44  E-value: 9.53e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600371    1 MGIFAFVKEAGEKLWDTLTGH--EAQAAESLKEHVAKVGLGNPNIQVSVEGDKVIASGEVASQEEKEKILLALGNVAGVS 78
Cdd:PRK11198   1 MGLFSFVKEAGEKLFDAVTAQadNEDAADALKEHISKQGLGDADVNVQVEDGKATVSGDAASQEAKEKILLAVGNIQGIA 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15600371   79 SVEDKITVAQAAPEARFVTVKKGDTLSAIAKAEYGNANAYMKIFEANKPMLSHPDKIYPGQVLRIPE 145
Cdd:PRK11198  81 SVDDQVKVATPAPESQFYTVKSGDTLSAIAKKVYGNANKYNKIFEANKPMLKSPDKIYPGQVLRIPE 147
 
Name Accession Description Interval E-value
PRK11198 PRK11198
LysM domain/BON superfamily protein; Provisional
 1-145 9.53e-85

LysM domain/BON superfamily protein; Provisional


Pssm-ID: 236880 [Multi-domain]  Cd Length: 147  Bit Score: 244.44  E-value: 9.53e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600371    1 MGIFAFVKEAGEKLWDTLTGH--EAQAAESLKEHVAKVGLGNPNIQVSVEGDKVIASGEVASQEEKEKILLALGNVAGVS 78
Cdd:PRK11198   1 MGLFSFVKEAGEKLFDAVTAQadNEDAADALKEHISKQGLGDADVNVQVEDGKATVSGDAASQEAKEKILLAVGNIQGIA 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15600371   79 SVEDKITVAQAAPEARFVTVKKGDTLSAIAKAEYGNANAYMKIFEANKPMLSHPDKIYPGQVLRIPE 145
Cdd:PRK11198  81 SVDDQVKVATPAPESQFYTVKSGDTLSAIAKKVYGNANKYNKIFEANKPMLKSPDKIYPGQVLRIPE 147
XkdP COG1652
Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion ...
 85-144 2.49e-25

Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion transport and metabolism];


Pssm-ID: 441258 [Multi-domain]  Cd Length: 163  Bit Score: 94.69  E-value: 2.49e-25
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600371  85 TVAQAAPEARFVTVKKGDTLSAIAKAEYGNANAYMKIFEANKPMLSHPDKIYPGQVLRIP 144
Cdd:COG1652 101 SAELAPDAPKTYTVKPGDTLWGIAKRFYGDPARWPEIAEANRDQIKNPDLIYPGQVLRIP 160
BON pfam04972
BON domain; This domain is found in a family of osmotic shock protection proteins. It is also ...
 21-88 7.98e-12

BON domain; This domain is found in a family of osmotic shock protection proteins. It is also found in some Secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes.


Pssm-ID: 428229 [Multi-domain]  Cd Length: 69  Bit Score: 56.84  E-value: 7.98e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15600371    21 HEAQAAESLKEHVAK-VGLGNPNIQVSVEGDKVIASGEVASQEEKEKILLALGNVAGVSSVEDKITVAQ 88
Cdd:pfam04972   1 DDADIAAKVKAALAKdPGLDAADINVTVENGVVTLSGTVPSEAEKEKAEEIARNVAGVKKVVNQLTVAP 69
LysM cd00118
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain ...
 94-143 2.38e-10

Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.


Pssm-ID: 212030 [Multi-domain]  Cd Length: 45  Bit Score: 52.49  E-value: 2.38e-10
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 15600371  94 RFVTVKKGDTLSAIAKAEYGNANAymkIFEANKpmLSHPDKIYPGQVLRI 143
Cdd:cd00118   1 KTYTVKPGDTLWSIAKKYGVTVEE---LAAANP--LINPDCIYPGQKLKI 45
LysM smart00257
Lysin motif;
95-143 1.37e-08

Lysin motif;


Pssm-ID: 197609 [Multi-domain]  Cd Length: 44  Bit Score: 47.83  E-value: 1.37e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15600371     95 FVTVKKGDTLSAIAKAEYGNANaymKIFEANKpmLSHPDKIYPGQVLRI 143
Cdd:smart00257   1 TYTVKKGDTLSSIARRYGISVS---DLLELNN--ILDPDNLQVGQKLKI 44
 
Name Accession Description Interval E-value
PRK11198 PRK11198
LysM domain/BON superfamily protein; Provisional
 1-145 9.53e-85

LysM domain/BON superfamily protein; Provisional


Pssm-ID: 236880 [Multi-domain]  Cd Length: 147  Bit Score: 244.44  E-value: 9.53e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600371    1 MGIFAFVKEAGEKLWDTLTGH--EAQAAESLKEHVAKVGLGNPNIQVSVEGDKVIASGEVASQEEKEKILLALGNVAGVS 78
Cdd:PRK11198   1 MGLFSFVKEAGEKLFDAVTAQadNEDAADALKEHISKQGLGDADVNVQVEDGKATVSGDAASQEAKEKILLAVGNIQGIA 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15600371   79 SVEDKITVAQAAPEARFVTVKKGDTLSAIAKAEYGNANAYMKIFEANKPMLSHPDKIYPGQVLRIPE 145
Cdd:PRK11198  81 SVDDQVKVATPAPESQFYTVKSGDTLSAIAKKVYGNANKYNKIFEANKPMLKSPDKIYPGQVLRIPE 147
XkdP COG1652
Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion ...
 85-144 2.49e-25

Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion transport and metabolism];


Pssm-ID: 441258 [Multi-domain]  Cd Length: 163  Bit Score: 94.69  E-value: 2.49e-25
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600371  85 TVAQAAPEARFVTVKKGDTLSAIAKAEYGNANAYMKIFEANKPMLSHPDKIYPGQVLRIP 144
Cdd:COG1652 101 SAELAPDAPKTYTVKPGDTLWGIAKRFYGDPARWPEIAEANRDQIKNPDLIYPGQVLRIP 160
BON pfam04972
BON domain; This domain is found in a family of osmotic shock protection proteins. It is also ...
 21-88 7.98e-12

BON domain; This domain is found in a family of osmotic shock protection proteins. It is also found in some Secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes.


Pssm-ID: 428229 [Multi-domain]  Cd Length: 69  Bit Score: 56.84  E-value: 7.98e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15600371    21 HEAQAAESLKEHVAK-VGLGNPNIQVSVEGDKVIASGEVASQEEKEKILLALGNVAGVSSVEDKITVAQ 88
Cdd:pfam04972   1 DDADIAAKVKAALAKdPGLDAADINVTVENGVVTLSGTVPSEAEKEKAEEIARNVAGVKKVVNQLTVAP 69
LysM cd00118
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain ...
 94-143 2.38e-10

Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.


Pssm-ID: 212030 [Multi-domain]  Cd Length: 45  Bit Score: 52.49  E-value: 2.38e-10
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 15600371  94 RFVTVKKGDTLSAIAKAEYGNANAymkIFEANKpmLSHPDKIYPGQVLRI 143
Cdd:cd00118   1 KTYTVKPGDTLWSIAKKYGVTVEE---LAAANP--LINPDCIYPGQKLKI 45
LysM pfam01476
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ...
 96-144 1.56e-09

LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.


Pssm-ID: 396179 [Multi-domain]  Cd Length: 43  Bit Score: 50.09  E-value: 1.56e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 15600371    96 VTVKKGDTLSAIAKAeYGnaNAYMKIFEANKpmLShPDKIYPGQVLRIP 144
Cdd:pfam01476   1 YTVKKGDTLSSIAKR-YG--ITVEQLAELNG--LS-SPNLYVGQKLKIP 43
LysM smart00257
Lysin motif;
95-143 1.37e-08

Lysin motif;


Pssm-ID: 197609 [Multi-domain]  Cd Length: 44  Bit Score: 47.83  E-value: 1.37e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15600371     95 FVTVKKGDTLSAIAKAEYGNANaymKIFEANKpmLSHPDKIYPGQVLRI 143
Cdd:smart00257   1 TYTVKKGDTLSSIARRYGISVS---DLLELNN--ILDPDNLQVGQKLKI 44
LysM COG1388
LysM repeat [Cell wall/membrane/envelope biogenesis];
87-144 4.85e-07

LysM repeat [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440998 [Multi-domain]  Cd Length: 156  Bit Score: 46.63  E-value: 4.85e-07
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 15600371  87 AQAAPEARFVTVKKGDTLSAIAKaEYG-NANAymkIFEANKpmLShPDKIYPGQVLRIP 144
Cdd:COG1388 103 AAAAPSPVTYTVKKGDTLWSIAR-RYGvSVEE---LKRWNG--LS-SDTIRPGQKLKIP 154
OsmY COG2823
Osmotically-inducible protein OsmY, contains BON domain [Cell wall/membrane/envelope ...
 37-90 4.17e-06

Osmotically-inducible protein OsmY, contains BON domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442071 [Multi-domain]  Cd Length: 157  Bit Score: 43.89  E-value: 4.17e-06
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 15600371  37 GLGNPNIQVSVEGDKVIASGEVASQEEKEKILLALGNVAGVSSVEDKITVAQAA 90
Cdd:COG2823  36 GLDAADINVTVYNGVVTLTGQVPSEAEKDRAEEIARGVPGVKSVVNELRVGPPS 89
CpaC COG4964
Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular ...
 26-87 1.75e-05

Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443990 [Multi-domain]  Cd Length: 456  Bit Score: 42.93  E-value: 1.75e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15600371  26 AESLKEHVAKVgLGNPNIQVSVEGDKVIASGEVASQEEKEKILLALGNVAGVSSVEDKITVA 87
Cdd:COG4964 112 LAGLRERLRRL-LPGEGIRVRAVGDRVVLSGTVSSAADADRAVDLAEAYAGGGKVINLLTVG 172
OapA COG3061
Cell division protein YtfB/OapA (opacity-associated protein A) [Cell cycle control, cell ...
 87-143 2.78e-04

Cell division protein YtfB/OapA (opacity-associated protein A) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442295 [Multi-domain]  Cd Length: 425  Bit Score: 39.65  E-value: 2.78e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600371  87 AQAAPEARFVTVKKGDTLSAI---AKAEYGNANAYMKIFEANKPmLSHpdkIYPGQVLRI 143
Cdd:COG3061  63 AAPEGEWQEYTVQSGDTLSQIfrrLGLSASDLYALLAAEGDAKP-LSR---LKPGQELRF 118
gpX COG5004
P2-like prophage tail protein X [Mobilome: prophages, transposons];
96-145 2.33e-03

P2-like prophage tail protein X [Mobilome: prophages, transposons];


Pssm-ID: 444028  Cd Length: 69  Bit Score: 34.85  E-value: 2.33e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 15600371  96 VTVKKGDTLSAIAKAEYGNANAYM-KIFEANkPMLSHPDKIYP-GQVLRIPE 145
Cdd:COG5004   5 YRTRQGDTLDALCWRYYGRTAGVVeAVLAAN-PGLAALGPVLPaGTVVTLPD 55
PRK10568 PRK10568
molecular chaperone OsmY;
42-86 3.08e-03

molecular chaperone OsmY;


Pssm-ID: 182556 [Multi-domain]  Cd Length: 203  Bit Score: 36.30  E-value: 3.08e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 15600371   42 NIQVSVEGDKVIASGEVASQEEKEKILLALGNVAGVSSVEDKITV 86
Cdd:PRK10568  79 DISVKTHQKVVTLSGFVESQAQAEEAVKVAKGVEGVTSVSDKLHV 123
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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