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Conserved domains on  [gi|15600268|ref|NP_253762|]
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ABC transporter permease [Pseudomonas aeruginosa PAO1]

Protein Classification

amino acid ABC transporter permease( domain architecture ID 11433582)

amino acid ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter which binds and transports amino acids

Gene Ontology:  GO:0140359|GO:0042626|GO:0006865
PubMed:  25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 113-320 1.75e-84

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


:

Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 253.46  E-value: 1.75e-84
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268 113 WAAGPLLW-GLWTTLWLSLVSGAIGLAIGLVAGLCRLSKNPTLHDLSTIYVELVRGTPLLVQIFIFYFFIGTV-LNLSRE 190
Cdd:COG0765   9 LDYLPLLLeGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPLLgIDLSPF 88

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268 191 FAGVAALALFTGAYVAEIIRAGVQSIARGQNEAARSLGLNAGQSMRYVILPQAFKRVLPPLAGQFISLVKDTSLVSVIAI 270
Cdd:COG0765  89 VAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDTSLVSVIGV 168

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|
gi 15600268 271 TELTKSGREAITTSFSTFEIWFCVAALYLLLNLPLSHMASRLERRLGQSD 320
Cdd:COG0765 169 PELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERRLARGR 218
 
Name Accession Description Interval E-value
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 113-320 1.75e-84

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 253.46  E-value: 1.75e-84
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268 113 WAAGPLLW-GLWTTLWLSLVSGAIGLAIGLVAGLCRLSKNPTLHDLSTIYVELVRGTPLLVQIFIFYFFIGTV-LNLSRE 190
Cdd:COG0765   9 LDYLPLLLeGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPLLgIDLSPF 88

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268 191 FAGVAALALFTGAYVAEIIRAGVQSIARGQNEAARSLGLNAGQSMRYVILPQAFKRVLPPLAGQFISLVKDTSLVSVIAI 270
Cdd:COG0765  89 VAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDTSLVSVIGV 168

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|
gi 15600268 271 TELTKSGREAITTSFSTFEIWFCVAALYLLLNLPLSHMASRLERRLGQSD 320
Cdd:COG0765 169 PELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERRLARGR 218
glnP PRK09494
glutamine ABC transporter permease protein; Reviewed
 113-316 5.91e-48

glutamine ABC transporter permease protein; Reviewed


Pssm-ID: 181907 [Multi-domain]  Cd Length: 219  Bit Score: 160.22  E-value: 5.91e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268  113 WAAGP-LLWGLWTTLWLSLVSGAIGLAIGLVAGLCRLSKNPTLHDLSTIYVELVRGTPLLVQIFIFYFFIGTVLNLSR-- 189
Cdd:PRK09494   9 WPAIPlLLEGAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFIYFALPMAFNDLRid 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268  190 -EFAGVAALALFTGAYVAEIIRAGVQSIARGQNEAARSLGLNAGQSMRYVILPQAFKRVLPPLAGQFISLVKDTSLVSVI 268
Cdd:PRK09494  89 pFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIKDTSLFIVI 168

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 15600268  269 AITELTKSGREAITTSFSTFEIWFCVAALYLLLNLPLSHMASRLERRL 316
Cdd:PRK09494 169 GVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFILRRLERRM 216
ectoine_ehuC TIGR03004
ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are ...
 117-316 5.19e-34

ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologous.


Pssm-ID: 132049 [Multi-domain]  Cd Length: 214  Bit Score: 123.81  E-value: 5.19e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268   117 PLLW-GLWTTLWLSLVSGAIGLAIGLVAGLCRLSKNPTLHDLSTIYVELVRGTPLLVQIFIFYF---FIGtvLNLSREFA 192
Cdd:TIGR03004   5 PLLLqGAWVTMQITLAGSVLATVLAFFAGLGRVSGGPILRTVALCYIEVFRGTSLLVQLFWFYFvlpLIG--LSLDPVTT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268   193 GVAALALFTGAYVAEIIRAGVQSIARGQNEAARSLGLNAGQSMRYVILPQAFKRVLPPLAGQFISLVKDTSLVSVIAITE 272
Cdd:TIGR03004  83 GVMVLGLHAGAYGAEIVRGALSSVSVQQLEACRALNFTRFQTLRRISLPQALVEMMPAFGNLAIELLKLTSLVSLISLAD 162

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 15600268   273 LTKSGREAITTSFSTFEIWFCVAALYLLLNLPLSHMASRLERRL 316
Cdd:TIGR03004 163 LTFAAQSIRNLTLDTLSIFAITLLCYFVMALIIMLIMRVLERVV 206
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 122-269 3.24e-25

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 100.05  E-value: 3.24e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268 122 LWTTLWLSLVSGAIGLAIGLVAGLCRLSKNPTLHDLSTIYVELVRGTPLLVQIFIFYFFIGTVLNLSRE----FAGVAAL 197
Cdd:cd06261   1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILpglgLPALILA 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15600268 198 ALFTGAYVAEIIRAGVQSIARGQNEAARSLGLNAGQSMRYVILPQAFKRVLPPLAGQFISLVKDTSLVSVIA 269
Cdd:cd06261  81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLG 152
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 136-269 5.73e-16

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 74.64  E-value: 5.73e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268   136 GLAIGLVAGLcrlSKNPTLHDLSTIYVELVRGTPLLVQIFIFYFFIGTVLNLSREFAGVAALALFTGAYVAEIIRAGVQS 215
Cdd:pfam00528   1 GIPLGIIAAL---RRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRS 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 15600268   216 IARGQNEAARSLGLNAGQSMRYVILPQAFKRVLPPLAGQFISLVKDTSLVSVIA 269
Cdd:pfam00528  78 LPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLG 131
 
Name Accession Description Interval E-value
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 113-320 1.75e-84

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 253.46  E-value: 1.75e-84
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268 113 WAAGPLLW-GLWTTLWLSLVSGAIGLAIGLVAGLCRLSKNPTLHDLSTIYVELVRGTPLLVQIFIFYFFIGTV-LNLSRE 190
Cdd:COG0765   9 LDYLPLLLeGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPLLgIDLSPF 88

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268 191 FAGVAALALFTGAYVAEIIRAGVQSIARGQNEAARSLGLNAGQSMRYVILPQAFKRVLPPLAGQFISLVKDTSLVSVIAI 270
Cdd:COG0765  89 VAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDTSLVSVIGV 168

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|
gi 15600268 271 TELTKSGREAITTSFSTFEIWFCVAALYLLLNLPLSHMASRLERRLGQSD 320
Cdd:COG0765 169 PELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERRLARGR 218
ArtM COG4160
ABC-type arginine/histidine transport system, permease component [Amino acid transport and ...
 113-316 3.84e-53

ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443325 [Multi-domain]  Cd Length: 229  Bit Score: 173.74  E-value: 3.84e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268 113 WAAGPLLW-GLWTTLWLSLVSGAIGLAIGLVAGLCRLSKNPTLHDLSTIYVELVRGTPLLVQIFIFYFFIG-------TV 184
Cdd:COG4160   7 FEYLPLLLsGLPLTLQLLALSLLLGFLLAVPLALARASGNRLLRWPARGYIYVFRGTPLLVQLFLIYYGLGqfewvreSW 86

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268 185 L-NLSRE--FAGVAALALFTGAYVAEIIRAGVQSIARGQNEAARSLGLNAGQSMRYVILPQAFKRVLPPLAGQFISLVKD 261
Cdd:COG4160  87 LwPLLRDpwFCALLALTLNTAAYTAEIFRGAIRAVPKGEIEAARALGMSRWQTFRRIILPSALRRALPAYSNEVILMLKA 166

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*
gi 15600268 262 TSLVSVIAITELTKSGREAITTSFSTFEIWFCVAALYLLLNLPLSHMASRLERRL 316
Cdd:COG4160 167 TALASTITVMDLTGVARRIYSRTYDPFEPFLIAALIYLVITFLLTRLFRLLERRL 221
glnP PRK09494
glutamine ABC transporter permease protein; Reviewed
 113-316 5.91e-48

glutamine ABC transporter permease protein; Reviewed


Pssm-ID: 181907 [Multi-domain]  Cd Length: 219  Bit Score: 160.22  E-value: 5.91e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268  113 WAAGP-LLWGLWTTLWLSLVSGAIGLAIGLVAGLCRLSKNPTLHDLSTIYVELVRGTPLLVQIFIFYFFIGTVLNLSR-- 189
Cdd:PRK09494   9 WPAIPlLLEGAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFIYFALPMAFNDLRid 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268  190 -EFAGVAALALFTGAYVAEIIRAGVQSIARGQNEAARSLGLNAGQSMRYVILPQAFKRVLPPLAGQFISLVKDTSLVSVI 268
Cdd:PRK09494  89 pFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIKDTSLFIVI 168

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 15600268  269 AITELTKSGREAITTSFSTFEIWFCVAALYLLLNLPLSHMASRLERRL 316
Cdd:PRK09494 169 GVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFILRRLERRM 216
PRK15100 PRK15100
cystine ABC transporter permease;
118-320 2.80e-42

cystine ABC transporter permease;


Pssm-ID: 185055 [Multi-domain]  Cd Length: 220  Bit Score: 145.66  E-value: 2.80e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268  118 LLWGLWTTLWLSLVSGAIGLAIGLVAGLCRLSKNPTLHDLSTIYVELVRGTPLLVQIFIFYFFIGTV-LNLSREFAGVAA 196
Cdd:PRK15100  15 LLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYVSIFRGTPLIAQLFMIYYGLPQFgIELDPIPAAMIG 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268  197 LALFTGAYVAEIIRAGVQSIARGQNEAARSLGLNAGQSMRYVILPQAFKRVLPPLAGQFISLVKDTSLVSVIAITELTKS 276
Cdd:PRK15100  95 LSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVKDTSLAATIQVPELFRQ 174

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 15600268  277 GREAITTSFSTFEIWFCVAALYLLLNLPLSHMASRLERRLGQSD 320
Cdd:PRK15100 175 AQLITSRTLEVFTMYLAASLIYWIMATVLSALQNRFENQLNRQE 218
ectoine_ehuC TIGR03004
ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are ...
 117-316 5.19e-34

ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologous.


Pssm-ID: 132049 [Multi-domain]  Cd Length: 214  Bit Score: 123.81  E-value: 5.19e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268   117 PLLW-GLWTTLWLSLVSGAIGLAIGLVAGLCRLSKNPTLHDLSTIYVELVRGTPLLVQIFIFYF---FIGtvLNLSREFA 192
Cdd:TIGR03004   5 PLLLqGAWVTMQITLAGSVLATVLAFFAGLGRVSGGPILRTVALCYIEVFRGTSLLVQLFWFYFvlpLIG--LSLDPVTT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268   193 GVAALALFTGAYVAEIIRAGVQSIARGQNEAARSLGLNAGQSMRYVILPQAFKRVLPPLAGQFISLVKDTSLVSVIAITE 272
Cdd:TIGR03004  83 GVMVLGLHAGAYGAEIVRGALSSVSVQQLEACRALNFTRFQTLRRISLPQALVEMMPAFGNLAIELLKLTSLVSLISLAD 162

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 15600268   273 LTKSGREAITTSFSTFEIWFCVAALYLLLNLPLSHMASRLERRL 316
Cdd:TIGR03004 163 LTFAAQSIRNLTLDTLSIFAITLLCYFVMALIIMLIMRVLERVV 206
BatB COG4597
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 118-279 1.95e-33

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443651 [Multi-domain]  Cd Length: 397  Bit Score: 126.80  E-value: 1.95e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268 118 LLWGLWTTLWLSLVsgAIGLA--IGLVAGLCRLSKNPTLHDLSTIYVELVRGTPLLVQIFIFYFFIGTVL---------- 185
Cdd:COG4597  88 FLVGLLNTLLVAVL--GIVLAtiLGFLVGIARLSSNWLVSKLATVYVEIFRNIPLLLQIFFWYFAVLEALpsprqslslf 165

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268     --------------------------------------------------------------------------------
Cdd:COG4597 166 dgvflnnrglylpapvfepgfgwvlaallaaivaafvlrrwarrrqeatgqrfpvwwislallvglpllaflllgaplsl 245

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268 186 --------------NLSREF-AGVAALALFTGAYVAEIIRAGVQSIARGQNEAARSLGLNAGQSMRYVILPQAFKRVLPP 250
Cdd:COG4597 246 dypelkgfnfrgglTLSPEFvALLLALSLYTAAFIAEIVRAGIQAVSKGQTEAARALGLRPGQTLRLVVLPQALRVIIPP 325

                       250       260       270
                ....*....|....*....|....*....|....*...
gi 15600268 251 LAGQFISLVKDTSL---------VSVIAITELTKSGRE 279
Cdd:COG4597 326 LTSQYLNLTKNSSLavaigypdlVSVFAGTTLNQTGQA 363
ectoine_ehuD TIGR03003
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ...
 118-316 1.18e-30

ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.


Pssm-ID: 132048 [Multi-domain]  Cd Length: 212  Bit Score: 114.95  E-value: 1.18e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268   118 LLWGLWTTLWLSLVSGAIGLAIGLVAGLCRLSKNPTLHDLSTIYVELVRGTPLLVQI-FIFYFFIGTVLNLSREFAGVAA 196
Cdd:TIGR03003  13 LIEGLKITILATALGFAIAAVLGLVFAILRRSAPTPISWPTSFVVEFIRGTPLLVQLyFLYYVLPDIGIRLPALVAGVLG 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268   197 LALFTGAYVAEIIRAGVQSIARGQNEAARSLGLNAGQSMRYVILPQAFKRVLPPLAGQFISLVKDTSLVSVIAITELTKS 276
Cdd:TIGR03003  93 LGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRHIILPQAIPPIIPALGNYLVAMFKETPVLSAITVLELMNQ 172

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 15600268   277 GREAITTSFSTFEIWFCVAALYLLLNLPLSHMASRLERRL 316
Cdd:TIGR03003 173 AKSIGNSTFRYLEPMTLVGVFFLILSIISVFFLRRLEARL 212
PRK15107 PRK15107
glutamate/aspartate ABC transporter permease GltK;
118-276 5.44e-29

glutamate/aspartate ABC transporter permease GltK;


Pssm-ID: 185062 [Multi-domain]  Cd Length: 224  Bit Score: 111.07  E-value: 5.44e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268  118 LLWGLWTTLWLSLVSGAIGLAIGLVAGLCRLSKNPTLHDLSTIYVELVRGTPLLVQIFIFYF----FIGTVLNLS----- 188
Cdd:PRK15107  16 LLDGLVITLKITVTAVVIGILWGTILAVMRLSSFKPVAWFAKAYVNVFRSIPLVMVLLWFYLivpgFLQNVLGLSpktdi 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268  189 REFAGVAALALFTGAYVAEIIRAGVQSIARGQNEAARSLGLNAGQSMRYVILPQAFKRVLPPLAGQFISLVKDTSLVSVI 268
Cdd:PRK15107  96 RLISAMVAFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLTQGIVLFQDTSLVYVL 175


                 ....*...
gi 15600268  269 AITELTKS 276
Cdd:PRK15107 176 SLADFFRT 183
HEQRo_perm_3TM TIGR01726
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This ...
 116-211 3.21e-27

amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 130787 [Multi-domain]  Cd Length: 99  Bit Score: 102.23  E-value: 3.21e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268   116 GPLLWGLWTTLWLSLVSGAIGLAIGLVAGLCRLSKNPTLHDLSTIYVELVRGTPLLVQIFIFYFFIGTV-LNLSREFAGV 194
Cdd:TIGR01726   3 PFLLKGLLLTLLLSVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFIYFGLPLIgIRLSPLTAAV 82

                          90
                  ....*....|....*..
gi 15600268   195 AALALFTGAYVAEIIRA 211
Cdd:TIGR01726  83 IALTLFYGAYLAEIFRG 99
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 122-269 3.24e-25

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 100.05  E-value: 3.24e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268 122 LWTTLWLSLVSGAIGLAIGLVAGLCRLSKNPTLHDLSTIYVELVRGTPLLVQIFIFYFFIGTVLNLSRE----FAGVAAL 197
Cdd:cd06261   1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILpglgLPALILA 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15600268 198 ALFTGAYVAEIIRAGVQSIARGQNEAARSLGLNAGQSMRYVILPQAFKRVLPPLAGQFISLVKDTSLVSVIA 269
Cdd:cd06261  81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLG 152
artM PRK11122
arginine ABC transporter permease ArtM;
118-273 1.08e-23

arginine ABC transporter permease ArtM;


Pssm-ID: 182978 [Multi-domain]  Cd Length: 222  Bit Score: 96.57  E-value: 1.08e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268  118 LLWGLWTTLWLSLVSGAIGLAIGLVAGLCRLSKNPTLHDLSTIYVELVRGTPLLVQIFIFYFFIGTVLNLSRE------- 190
Cdd:PRK11122   8 LLKGLHTSLTLTVASLLVALVLALIFTIILTLKTPVLVWLVRGYITLFTGTPLLVQIFLIYYGPGQFPWLQEYpwlwhll 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268  191 ----FAGVAALALFTGAYVAEIIRAGVQSIARGQNEAARSLGLNAGQSMRyVILPQAFKRVLPPLAGQFISLVKDTSLVS 266
Cdd:PRK11122  88 sqpwLCAMLALALNSAAYSTQLFYGAVRAIPEGQWQSCAALGMSKKQTLR-ILLPYAFKRALSSYSNEVVLVFKSTSLAY 166


                 ....*..
gi 15600268  267 VIAITEL 273
Cdd:PRK11122 167 TITLMDV 173
PRK11123 PRK11123
arginine ABC transporter permease ArtQ;
117-296 2.90e-23

arginine ABC transporter permease ArtQ;


Pssm-ID: 182979 [Multi-domain]  Cd Length: 238  Bit Score: 95.90  E-value: 2.90e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268  117 PLLWGLWTTLWLSLVSGAIGLAIGLVAGLCRLSKNPTLHDLSTIYVELVRGTP-LLVQIFIFYFFIGTVLNLSREFA--- 192
Cdd:PRK11123   6 PLASAAGMTVGLAVCALIVGLALAMLFAVWESAKWRPVAWPGTALVTLLRGLPeILVVLFIYFGSSQLLLTLSDGFTlnl 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268  193 ---------------------GVAALALFTGAYVAEIIRAGVQSIARGQNEAARSLGLNAGQSMRYVILPQAFKRVLPPL 251
Cdd:PRK11123  86 gfvqipvqmdienfevspflcGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHALPGL 165

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 15600268  252 AGQFISLVKDTSLVSVIAITELTKSGREAITTSFSTFeIWFCVAA 296
Cdd:PRK11123 166 GNQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPF-TWYIIAA 209
PRK15069 PRK15069
histidine ABC transporter permease HisM;
113-296 1.51e-21

histidine ABC transporter permease HisM;


Pssm-ID: 185029 [Multi-domain]  Cd Length: 234  Bit Score: 91.27  E-value: 1.51e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268  113 WAAGPLLWGLWTTLWLSLVSGAIGLAIGLVAGLCRLSKNPTLHDLSTIYVELVRGTPLLVQIFIFYFFIGTvLNLSREFA 192
Cdd:PRK15069  14 WTDGYRFTGLAITLWLLVASVVIGFVLAVPLAIARVSSNKWIRFPVWLYTYVFRGTPLYVQLLVFYTGMYS-LEIVRGTD 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268  193 ------------GVAALALFTGAYVAEIIRAGVQSIARGQNEAARSLGLNAGQSMRYVILPQAFKRVLPPLAGQFISLVK 260
Cdd:PRK15069  93 lldaffrsglncTILAFTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGMSTFKLYRRIILPSALRRALPAYSNEVILMLH 172

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 15600268  261 DTSLVSVIAITELTKSGREAITTSFSTFEIwFCVAA 296
Cdd:PRK15069 173 ATTLAFTATVPDILKIARDINSATYQPFQA-FGIAA 207
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 136-269 5.73e-16

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 74.64  E-value: 5.73e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268   136 GLAIGLVAGLcrlSKNPTLHDLSTIYVELVRGTPLLVQIFIFYFFIGTVLNLSREFAGVAALALFTGAYVAEIIRAGVQS 215
Cdd:pfam00528   1 GIPLGIIAAL---RRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRS 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 15600268   216 IARGQNEAARSLGLNAGQSMRYVILPQAFKRVLPPLAGQFISLVKDTSLVSVIA 269
Cdd:pfam00528  78 LPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLG 131
PRK15135 PRK15135
histidine ABC transporter permease HisQ;
118-296 1.77e-15

histidine ABC transporter permease HisQ;


Pssm-ID: 185089 [Multi-domain]  Cd Length: 228  Bit Score: 74.44  E-value: 1.77e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268  118 LLWGLWTTLWLSLVSGAIGLAIGLVAGLCRLSKNPTLHDLSTIYVELVRGTPLLVQIFIFYFFIGTVLNLSREF------ 191
Cdd:PRK15135   9 ILQGALVTLELALSSVVLAVIIGLIGAGGKLSQNRLLGLIFEGYTTLIRGVPDLVLMLLIFYGLQIALNSVTEAlgvgqi 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268  192 ------AGVAALALFTGAYVAEIIRAGVQSIARGQNEAARSLGLNAGQSMRYVILPQAFKRVLPPLAGQFISLVKDTSLV 265
Cdd:PRK15135  89 didpmvAGIITLGFIYGAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPAMMRYALPGIGNNWQVILKATALV 168

                        170       180       190
                 ....*....|....*....|....*....|.
gi 15600268  266 SVIAITELTKSGREAITTSFSTFeiWFCVAA 296
Cdd:PRK15135 169 SLLGLEDVVKATQLAGKSTWEPF--YFAIVC 197
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 111-269 6.19e-12

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 64.40  E-value: 6.19e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268 111 RHWAAGPLLWGLWTTLWLSLVSGAIGLAIGLVAGLCrLSKNPTLHDLSTIYVELVRGTPLLVQIFIFYFFIGTVlnlsrE 190
Cdd:COG0600  52 ELLASGELWEHLLASLLRVLLGFALAALLGVPLGLL-LGLSRLLRRLLDPLLVFLRPIPPLALAPLLILWFGIG-----E 125

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15600268 191 FAGVAALALFTGAYVAEIIRAGVQSIARGQNEAARSLGLNAGQSMRYVILPQAFKRVlppLAGQFISLVkdTSLVSVIA 269
Cdd:COG0600 126 ASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYI---FTGLRIALG--LAWIGLVV 199
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 118-254 2.40e-11

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 62.79  E-value: 2.40e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268 118 LLWGLWTTLWLSLVSGAIGLAIGLVAGLC---RLSKNPTLHDLSTIYVELVRGTPLLV--QIFIFYFFIGTvlnlsreFA 192
Cdd:COG3639  49 LLSALLETLAIALLGTLLGAVLALPLAFLaarNLAPNPWVRLLARRLLNVLRAIPELVwaLIFVAAVGLGP-------FA 121

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15600268 193 GVAALALFTGAYVAEIIRAGVQSIARGQNEAARSLGLNAGQSMRYVILPQafkrVLPPLAGQ 254
Cdd:COG3639 122 GVLALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQ----VLPQFLSY 179
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 113-254 2.81e-10

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 59.48  E-value: 2.81e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268   113 WAAGPLLW-GLWTTLWLSLVSGAIGLAIGLVAGLC---RLSKNPTLHDLSTIYVELVRGTPLLV--QIFIFYFFIGTvln 186
Cdd:TIGR01097  50 WSYLPRILkALLETLAMAILGTVLAAVLAVPLALLaarNITPSPWLYGLARLLLNFLRAIPELVwaLIFVAAVGLGP--- 126

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15600268   187 lsreFAGVAALALFTGAYVAEIIRAGVQSIARGQNEAARSLGLNAGQSMRYVILPQafkrVLPPLAGQ 254
Cdd:TIGR01097 127 ----FAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQ----VLPQFLSY 186
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
118-259 4.33e-08

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 52.81  E-value: 4.33e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268  118 LLWGLWTTLWLSLVSGAIGLAIGLVAGLC-------RLSKNPTLHDLSTIYVELVRGTP---LLVQIFIFYFFI-GTVLN 186
Cdd:PRK10782   9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLlyvtrpgQIIANAKLYRTLSALVNIFRSIPfiiLLVWMIPFTRVIvGTSIG 88

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15600268  187 LSrefAGVAALALFTGAYVAEIIRAGVQSIARGQNEAARSLGLNAGQSMRYVILPQAFKRVLPPLAGQFISLV 259
Cdd:PRK10782  89 LQ---AAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLV 158
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 113-243 5.01e-07

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 50.11  E-value: 5.01e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268 113 WAAGPLLWGLWTTLWLSLVSGAIGLAIGLVAGLcrlsknpTLHDLSTIYVELVRG---TPLLVQ-----IFIFYFFIGtv 184
Cdd:COG1177  54 FSDPRLLDALLNSLLIALLSTLLATVLGTPAAL-------ALARYRFRGRRLLLAlllLPLVVPgivlgVALLLLFSA-- 124

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268 185 LNLSREFAGV-AALALFTGAYVAEIIRAGVQSIARGQNEAARSLGLNAGQSMRYVILPQA 243
Cdd:COG1177 125 LGLSGGLWGLiLAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLI 184
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
122-274 6.38e-06

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 47.46  E-value: 6.38e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268 122 LWTTLWLSLVSGAIGLAIGLVAGLC-RLSKNPTLHDLSTIyVELVRGTPLLVQ----IFIFYFFIGTVLNLSReFAGVAA 196
Cdd:COG1178 340 LLNSLLLALLAALLAVLLALLLAYLvRRRRGRLARLLDRL-AMLPYAVPGIVLglglLLLFNRPLPLLLYGTL-AILVLA 417

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15600268 197 LALFTGAYVAEIIRAGVQSIARGQNEAARSLGLNAGQSMRYVILPqafkRVLPPLAGQFIslvkdtsLVSVIAITELT 274
Cdd:COG1178 418 YVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLP----LLRPGLLAAAL-------LVFVTSMKELS 484
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 118-259 1.01e-05

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 46.26  E-value: 1.01e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268 118 LLWGLWTTLWLSLVSGAIGLAIGLVAGLC-------------RLsknptlhdlstiyVELVRGTP-LLVQIFIFYFFIGT 183
Cdd:COG1173  74 LLYGARISLLVGLLAVLIALVIGVLLGLLagyfggwvdavlmRL-------------VDVLLAFPsLLLAIALVAVLGPG 140

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15600268 184 VLNLsrefagVAALALFTGAYVAEIIRAGVQSIaRGQN--EAARSLGLNAGQSMRYVILPQafkrVLPPLAGQFISLV 259
Cdd:COG1173 141 LLNV------ILALGLTGWPGYARLVRAQVLSL-REREyvEAARALGASPLRIIFRHILPN----VLPPLIVQATLGI 207
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
108-243 1.29e-04

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 43.61  E-value: 1.29e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268 108 GVTRHWAAGPLLWGLWTTLWLSLVSG----AIGLAIGLVAGLCRLSKNPTLHDLSTIyvelvrgtPLLVQIFI------- 176
Cdd:COG1178  42 NFWALLSDPYLWRALGNTLLLALLVTllslLLGVPLAWLLARTDFPGRRLLRWLLLL--------PLALPPYVvalawia 113

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15600268 177 FYFFIGTVLNLSREFAG------------VAALALFTGAYVAEIIRAGVQSIARGQNEAARSLGLNAGQSMRYVILPQA 243
Cdd:COG1178 114 LFGPNGLLNTLLRALFGleppdiyglggiILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLL 192
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
114-248 1.45e-04

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 42.61  E-value: 1.45e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268  114 AAGPLLWGLWTTLWLSLVS----GAIGLAIGLVAGLCRLSKNptLHDLStiyVELVRGTPLLVQIFIFYFFIGTvlnlsR 189
Cdd:PRK11365  54 ASGELWQHLAISSWRALIGfsigGSLGLILGLISGLSRWGER--LLDTS---IQMLRNVPHLALIPLVILWFGI-----D 123

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 15600268  190 EFAGVAALALFTGAYVAEIIRAGVQSIARGQNEAARSLGLNAGQSMRYVILPQAFKRVL 248
Cdd:PRK11365 124 ESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIM 182
PRK10160 PRK10160
taurine ABC transporter permease TauC;
130-248 1.78e-04

taurine ABC transporter permease TauC;


Pssm-ID: 182276  Cd Length: 275  Bit Score: 42.46  E-value: 1.78e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600268  130 LVSGAIGLAIGLVAGLcrlskNPTLHDLSTIYVELVRGTPLL--VQIFIFYFFIGtvlnlsrEFAGVAALALFTGAYVAE 207
Cdd:PRK10160  92 LAAVVIGIPVGIAMGL-----SPTVRGILDPLIELYRPVPPLayLPLMVIWFGIG-------ETSKILLIYLAIFAPVAM 159

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 15600268  208 IIRAGVQSIARGQNEAARSLGLNAGQSMRYVILPQAFKRVL 248
Cdd:PRK10160 160 SALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEIL 200
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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