|
Name |
Accession |
Description |
Interval |
E-value |
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
1-531 |
0e+00 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 1041.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 1 MKRTVAIGFIGATLDRLGKGAARWQKWRPSIGLCQQPDLLIDRLELIHgnDARDLGLAERIRADIAAVSPHTEVRLQQME 80
Cdd:COG4650 2 MKKTVVIGFLGTTLDRRGKGPNRWEKWRPTVSLCQQEDLLVDRLELLH--DPRDRALAEQVAEDIAQVSPETEVRLHEVD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 81 LRNPWDFEEVYGALHDFVSAYPFDTEREDYLVHITTGTHVAQICWFLLTEARYLPARLVQTSPSRRKDEArhPEGSATLI 160
Cdd:COG4650 80 LADPWDFEEVYAALLDFARAYPFDPEREDYLVHITTGTHVAQICWFLLTEARYLPGRLLQTSPPRKRRAG--AAGSYTII 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 161 DLDLSRYDRIASRFRREQEESLALLKSGIATRNAAFNRSIEQIERVAVRSRAPMLLVGPTGAGKSFLARRIYELKRSRHQ 240
Cdd:COG4650 158 DLDLSRYDAIASRFAQEQQEAVSFLKSGIATRNAAFNRLIEQIERVAIRSRAPILLTGPTGAGKSQLARRIYELKKARHQ 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 241 LDGRFVEVNCATLRGDGAMSALFGHVKGAFTGAQNAREGLLRAADGGMLFLDEIGELGADEQAMLLKAIEEKRFFPLGSD 320
Cdd:COG4650 238 VSGRFVEVNCATLRGDGAMSALFGHVKGAFTGAVSDRAGLLRSADGGVLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSD 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 321 REVESDFQLIAGTHRDLRGRVAEGLFREDLFARINLWTFELPGLAGRREDIEPNIDFELERHAREQGRQVRFNLEAKRRY 400
Cdd:COG4650 318 KEVSSDFQLIAGTNRDLRQEVAEGRFREDLLARINLWTFRLPGLAERREDIEPNLDYELARFAREQGRRVRFNKEARARY 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 401 LAFAGSSEARWAGNFRELSASITRMATLADSGRIDEALVEEEILRLRQAWGLDAGREP---LADLLGQ-RVEALDLFDRL 476
Cdd:COG4650 398 LAFATSPEALWSGNFRDLNASVTRMATLAEGGRITVALVDEEIARLRRLWQRAEAATGddlLAELLGAeQAAELDLFDRV 477
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 15599777 477 QLQAVLEVCRGAKTLSEAGRRLFAVSRQDKRNPNDADRLRKYLARFGLDWAQIRA 531
Cdd:COG4650 478 QLAAVIRVCRRSRSLSEAGRTLFAVSRQQKASPNDADRLRKYLARFGLSWDQVKA 532
|
|
| RNA_repair_RtcR |
NF038308 |
RNA repair transcriptional activator RtcR; |
1-531 |
0e+00 |
|
RNA repair transcriptional activator RtcR;
Pssm-ID: 468466 [Multi-domain] Cd Length: 527 Bit Score: 947.39 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 1 MKRTVAIGFIGATLDRlGKGAARWQKWRPSIGLCQQPDLLIDRLELIHgnDARDLGLAERIRADIAAVSPHTEVRLQQME 80
Cdd:NF038308 1 MKKTVVIGFLGTTLDQ-GKGAKRWQKWRPTVALCQQPDLPVDRLELLH--DRRDRALAERVAADIEEVSPETEVRLVPVV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 81 LRNPWDFEEVYGALHDFVSAYPFDTEREDYLVHITTGTHVAQICWFLLTEARYLPARLVQTSPSRRKdearhPEGSATLI 160
Cdd:NF038308 78 LRDPWDFEEVYGALLDFARAYPFDTENEDYLVHITTGTHVAQICWFLLVEARYLPARLLQTSPPRDK-----EEGTYEII 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 161 DLDLSRYDRIASRFRREQEESLALLKSGIATRNAAFNRSIEQIERVAVRSRAPMLLVGPTGAGKSFLARRIYELKRSRHQ 240
Cdd:NF038308 153 DLDLSRYDALAQRFAREQAEAVSFLKSGIATRNAAFNRLIEQIERVALRSRAPILLTGPTGAGKSFLARRIYELKKRRHQ 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 241 LDGRFVEVNCATLRGDGAMSALFGHVKGAFTGAQNAREGLLRAADGGMLFLDEIGELGADEQAMLLKAIEEKRFFPLGSD 320
Cdd:NF038308 233 VSGPFVEVNCATLRGDLAMSELFGHVKGAFTGAQADRAGLLRAADGGTLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSD 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 321 REVESDFQLIAGTHRDLRGRVAEGLFREDLFARINLWTFELPGLAGRREDIEPNIDFELERHAREQGRQVRFNLEAKRRY 400
Cdd:NF038308 313 KEVSSDFQLIAGTNRDLRQEVAEGRFREDLYARINLWTFRLPGLRERREDIEPNLDYELDRFARELGRQVRFNKEARFRY 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 401 LAFAGSSEARWAGNFRELSASITRMATLADSGRIDEALVEEEILRLRQAW----GLDAGREPLADLLGQRVEALDLFDRL 476
Cdd:NF038308 393 LAFATSPEALWPGNFRELSASVTRMATLADGGRITEELVEEEIARLRAAWqsapAAADDDALADLLGGEQLAELDLFDRV 472
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 15599777 477 QLQAVLEVCRGAKTLSEAGRRLFAVSRQDKRNPNDADRLRKYLARFGLDWAQIRA 531
Cdd:NF038308 473 QLAAVLRVCRQSRSLSAAGRRLFGVSRQQKASPNDADRLRKYLARFGLSWEDIKA 527
|
|
| RtcR |
pfam06956 |
Regulator of RNA terminal phosphate cyclase; RtcR is a sigma54-dependent enhancer binding ... |
2-188 |
7.97e-124 |
|
Regulator of RNA terminal phosphate cyclase; RtcR is a sigma54-dependent enhancer binding protein that activates transcription of the rtcBA operon. The product of the rtcA gene is an RNA 3'-terminal phosphate cyclase. This domain is found at the N terminus of the RtcR sequence. RtcR, and other sigma54-dependent activators, contain pfam00158 in the central region of the protein sequence.
Pssm-ID: 429211 [Multi-domain] Cd Length: 183 Bit Score: 360.38 E-value: 7.97e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 2 KRTVAIGFIGATLDRLGKGAARWQKWRPSIGLCQQPDLLIDRLELIHgnDARDLGLAERIRADIAAVSPHTEVRLQQMEL 81
Cdd:pfam06956 1 KKTVVIGFLGTTLDRRGKGAKRWERWRPTVSLCQQPDLLVDRLELLH--DRRDRALAERVRADIAQVSPETEVRLHEVNF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 82 RNPWDFEEVYGALHDFVSAYPFDTEREDYLVHITTGTHVAQICWFLLTEARYLPARLVQTSPSRRKDeaRHPEGSATLID 161
Cdd:pfam06956 79 RDPWDFEEVYGALHDFARAYPFDPEQEDYLVHITTGTHVAQICWFLLTEARYIPGRLLQTSPPRRRE--RGAAGSYTIID 156
|
170 180
....*....|....*....|....*..
gi 15599777 162 LDLSRYDRIASRFRREQEESLALLKSG 188
Cdd:pfam06956 157 LDLSRYDAIASRFAQEQQEGTSFLKSG 183
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
130-436 |
2.91e-57 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 199.56 E-value: 2.91e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 130 EARYLP--ARLV-QTSPSRRKDEARHPEGSATLIDLDLSRYDRIASRFRREQeeslaLLKSGIATRNAAFNRSIEQIERV 206
Cdd:TIGR01817 141 EVRFLEmvANLIgQTVRLHRLVAQRRERLIAEAVQLSKQLRDKAPEIARRRS-----GKEDGIIGKSPAMRQVVDQARVV 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 207 AvRSRAPMLLVGPTGAGKSFLARRIYELKRSRHqldGRFVEVNCATLRGDGAMSALFGHVKGAFTGAQNAREGLLRAADG 286
Cdd:TIGR01817 216 A-RSNSTVLLRGESGTGKELIAKAIHYLSPRAK---RPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADG 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 287 GMLFLDEIGELGADEQAMLLKAIEEKRFFPLGSDREVESDFQLIAGTHRDLRGRVAEGLFREDLFARINLWTFELPGLAG 366
Cdd:TIGR01817 292 GTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRE 371
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 367 RREDIEPNIDFELERHAREQGRQVRFNLEAKRRYlafagsSEARWAGNFRELSASITRMATLADSGRIDE 436
Cdd:TIGR01817 372 RREDIPLLAEAFLEKFNRENGRPLTITPSAIRVL------MSCKWPGNVRELENCLERTATLSRSGTITR 435
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
189-525 |
6.56e-49 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 175.03 E-value: 6.56e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 189 IATRNAAFNRSIEQIERVAvRSRAPMLLVGPTGAGKSFLARRIYelkRSRHQLDGRFVEVNCATLRGDGAMSALFGHVKG 268
Cdd:PRK15115 136 IVTRSPLMLRLLEQARMVA-QSDVSVLINGQSGTGKEILAQAIH---NASPRASKPFIAINCGALPEQLLESELFGHARG 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 269 AFTGAQNAREGLLRAADGGMLFLDEIGELGADEQAMLLKAIEEKRFFPLGSDREVESDFQLIAGTHRDLRGRVAEGLFRE 348
Cdd:PRK15115 212 AFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFRE 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 349 DLFARINLWTFELPGLAGRREDIePNIDFELERHAREQGR-QVR-FNLEAKRRYLAfagsseARWAGNFRELSASITRMA 426
Cdd:PRK15115 292 DLYYRLNVVSLKIPALAERTEDI-PLLANHLLRQAAERHKpFVRaFSTDAMKRLMT------ASWPGNVRQLVNVIEQCV 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 427 TLADSGRIDEALVEEEIlrlrqawgldAGREplaDLLGQRVEALDLFDRLQLQAVLEVCRGAKTlseagrrlfAVSRQDK 506
Cdd:PRK15115 365 ALTSSPVISDALVEQAL----------EGEN---TALPTFVEARNQFELNYLRKLLQITKGNVT---------HAARMAG 422
|
330
....*....|....*....
gi 15599777 507 RNPNDadrLRKYLARFGLD 525
Cdd:PRK15115 423 RNRTE---FYKLLSRHELD 438
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
203-356 |
1.94e-18 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 82.19 E-value: 1.94e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 203 IERVAVRSRAPMLLVGPTGAGKSFLARRI-YELKRSRHqldgRFVEVNCATLRGDGAMSALFGHVkgaftgAQNAREGLL 281
Cdd:cd00009 11 REALELPPPKNLLLYGPPGTGKTTLARAIaNELFRPGA----PFLYLNASDLLEGLVVAELFGHF------LVRLLFELA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15599777 282 RAADGGMLFLDEIGELGADEQAMLLKAIEEKRFFplgsdREVESDFQLIAGTHRDLrgrvaEGLFREDLFARINL 356
Cdd:cd00009 81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDL-----RIDRENVRVIGATNRPL-----LGDLDRALYDRLDI 145
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
213-353 |
6.96e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 57.77 E-value: 6.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 213 PMLLVGPTGAGKSFLARRI-YELKRSrhqlDGRFVEVNCATLR---GDGAMSALFGHVKGAFTGAQNAREG--LLRAADG 286
Cdd:smart00382 4 VILIVGPPGSGKTTLARALaRELGPP----GGGVIYIDGEDILeevLDQLLLIIVGGKKASGSGELRLRLAlaLARKLKP 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15599777 287 GMLFLDEIGELGADEQAMLLKAIEEKRffpLGSDREVESDFQLIAGTHR--DLRGRVAEGLFREDLFAR 353
Cdd:smart00382 80 DVLILDEITSLLDAEQEALLLLLEELR---LLLLLKSEKNLTVILTTNDekDLGPALLRRRFDRRIVLL 145
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
1-531 |
0e+00 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 1041.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 1 MKRTVAIGFIGATLDRLGKGAARWQKWRPSIGLCQQPDLLIDRLELIHgnDARDLGLAERIRADIAAVSPHTEVRLQQME 80
Cdd:COG4650 2 MKKTVVIGFLGTTLDRRGKGPNRWEKWRPTVSLCQQEDLLVDRLELLH--DPRDRALAEQVAEDIAQVSPETEVRLHEVD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 81 LRNPWDFEEVYGALHDFVSAYPFDTEREDYLVHITTGTHVAQICWFLLTEARYLPARLVQTSPSRRKDEArhPEGSATLI 160
Cdd:COG4650 80 LADPWDFEEVYAALLDFARAYPFDPEREDYLVHITTGTHVAQICWFLLTEARYLPGRLLQTSPPRKRRAG--AAGSYTII 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 161 DLDLSRYDRIASRFRREQEESLALLKSGIATRNAAFNRSIEQIERVAVRSRAPMLLVGPTGAGKSFLARRIYELKRSRHQ 240
Cdd:COG4650 158 DLDLSRYDAIASRFAQEQQEAVSFLKSGIATRNAAFNRLIEQIERVAIRSRAPILLTGPTGAGKSQLARRIYELKKARHQ 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 241 LDGRFVEVNCATLRGDGAMSALFGHVKGAFTGAQNAREGLLRAADGGMLFLDEIGELGADEQAMLLKAIEEKRFFPLGSD 320
Cdd:COG4650 238 VSGRFVEVNCATLRGDGAMSALFGHVKGAFTGAVSDRAGLLRSADGGVLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSD 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 321 REVESDFQLIAGTHRDLRGRVAEGLFREDLFARINLWTFELPGLAGRREDIEPNIDFELERHAREQGRQVRFNLEAKRRY 400
Cdd:COG4650 318 KEVSSDFQLIAGTNRDLRQEVAEGRFREDLLARINLWTFRLPGLAERREDIEPNLDYELARFAREQGRRVRFNKEARARY 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 401 LAFAGSSEARWAGNFRELSASITRMATLADSGRIDEALVEEEILRLRQAWGLDAGREP---LADLLGQ-RVEALDLFDRL 476
Cdd:COG4650 398 LAFATSPEALWSGNFRDLNASVTRMATLAEGGRITVALVDEEIARLRRLWQRAEAATGddlLAELLGAeQAAELDLFDRV 477
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 15599777 477 QLQAVLEVCRGAKTLSEAGRRLFAVSRQDKRNPNDADRLRKYLARFGLDWAQIRA 531
Cdd:COG4650 478 QLAAVIRVCRRSRSLSEAGRTLFAVSRQQKASPNDADRLRKYLARFGLSWDQVKA 532
|
|
| RNA_repair_RtcR |
NF038308 |
RNA repair transcriptional activator RtcR; |
1-531 |
0e+00 |
|
RNA repair transcriptional activator RtcR;
Pssm-ID: 468466 [Multi-domain] Cd Length: 527 Bit Score: 947.39 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 1 MKRTVAIGFIGATLDRlGKGAARWQKWRPSIGLCQQPDLLIDRLELIHgnDARDLGLAERIRADIAAVSPHTEVRLQQME 80
Cdd:NF038308 1 MKKTVVIGFLGTTLDQ-GKGAKRWQKWRPTVALCQQPDLPVDRLELLH--DRRDRALAERVAADIEEVSPETEVRLVPVV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 81 LRNPWDFEEVYGALHDFVSAYPFDTEREDYLVHITTGTHVAQICWFLLTEARYLPARLVQTSPSRRKdearhPEGSATLI 160
Cdd:NF038308 78 LRDPWDFEEVYGALLDFARAYPFDTENEDYLVHITTGTHVAQICWFLLVEARYLPARLLQTSPPRDK-----EEGTYEII 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 161 DLDLSRYDRIASRFRREQEESLALLKSGIATRNAAFNRSIEQIERVAVRSRAPMLLVGPTGAGKSFLARRIYELKRSRHQ 240
Cdd:NF038308 153 DLDLSRYDALAQRFAREQAEAVSFLKSGIATRNAAFNRLIEQIERVALRSRAPILLTGPTGAGKSFLARRIYELKKRRHQ 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 241 LDGRFVEVNCATLRGDGAMSALFGHVKGAFTGAQNAREGLLRAADGGMLFLDEIGELGADEQAMLLKAIEEKRFFPLGSD 320
Cdd:NF038308 233 VSGPFVEVNCATLRGDLAMSELFGHVKGAFTGAQADRAGLLRAADGGTLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSD 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 321 REVESDFQLIAGTHRDLRGRVAEGLFREDLFARINLWTFELPGLAGRREDIEPNIDFELERHAREQGRQVRFNLEAKRRY 400
Cdd:NF038308 313 KEVSSDFQLIAGTNRDLRQEVAEGRFREDLYARINLWTFRLPGLRERREDIEPNLDYELDRFARELGRQVRFNKEARFRY 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 401 LAFAGSSEARWAGNFRELSASITRMATLADSGRIDEALVEEEILRLRQAW----GLDAGREPLADLLGQRVEALDLFDRL 476
Cdd:NF038308 393 LAFATSPEALWPGNFRELSASVTRMATLADGGRITEELVEEEIARLRAAWqsapAAADDDALADLLGGEQLAELDLFDRV 472
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 15599777 477 QLQAVLEVCRGAKTLSEAGRRLFAVSRQDKRNPNDADRLRKYLARFGLDWAQIRA 531
Cdd:NF038308 473 QLAAVLRVCRQSRSLSAAGRRLFGVSRQQKASPNDADRLRKYLARFGLSWEDIKA 527
|
|
| RtcR |
pfam06956 |
Regulator of RNA terminal phosphate cyclase; RtcR is a sigma54-dependent enhancer binding ... |
2-188 |
7.97e-124 |
|
Regulator of RNA terminal phosphate cyclase; RtcR is a sigma54-dependent enhancer binding protein that activates transcription of the rtcBA operon. The product of the rtcA gene is an RNA 3'-terminal phosphate cyclase. This domain is found at the N terminus of the RtcR sequence. RtcR, and other sigma54-dependent activators, contain pfam00158 in the central region of the protein sequence.
Pssm-ID: 429211 [Multi-domain] Cd Length: 183 Bit Score: 360.38 E-value: 7.97e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 2 KRTVAIGFIGATLDRLGKGAARWQKWRPSIGLCQQPDLLIDRLELIHgnDARDLGLAERIRADIAAVSPHTEVRLQQMEL 81
Cdd:pfam06956 1 KKTVVIGFLGTTLDRRGKGAKRWERWRPTVSLCQQPDLLVDRLELLH--DRRDRALAERVRADIAQVSPETEVRLHEVNF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 82 RNPWDFEEVYGALHDFVSAYPFDTEREDYLVHITTGTHVAQICWFLLTEARYLPARLVQTSPSRRKDeaRHPEGSATLID 161
Cdd:pfam06956 79 RDPWDFEEVYGALHDFARAYPFDPEQEDYLVHITTGTHVAQICWFLLTEARYIPGRLLQTSPPRRRE--RGAAGSYTIID 156
|
170 180
....*....|....*....|....*..
gi 15599777 162 LDLSRYDRIASRFRREQEESLALLKSG 188
Cdd:pfam06956 157 LDLSRYDAIASRFAQEQQEGTSFLKSG 183
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
168-523 |
1.80e-70 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 231.39 E-value: 1.80e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 168 DRIASRFRREQEESLAllkSGIATRNAAFNRSIEQIERVAvRSRAPMLLVGPTGAGKSFLARRIYELKRSRhqlDGRFVE 247
Cdd:COG2204 115 ERALERRRLRRENAED---SGLIGRSPAMQEVRRLIEKVA-PSDATVLITGESGTGKELVARAIHRLSPRA---DGPFVA 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 248 VNCATLRGDGAMSALFGHVKGAFTGAQNAREGLLRAADGGMLFLDEIGELGADEQAMLLKAIEEKRFFPLGSDREVESDF 327
Cdd:COG2204 188 VNCAAIPEELLESELFGHEKGAFTGAVARRIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDV 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 328 QLIAGTHRDLRGRVAEGLFREDLFARINLWTFELPGLAGRREDIEPNIDFELERHAREQGRQVRFNLEAKRRYLAFAgss 407
Cdd:COG2204 268 RVIAATNRDLEELVEEGRFREDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKPVKLSPEALEALLAYD--- 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 408 earWAGNFRELSASITRMATLADSGRIDEALVEeeilrlrqawgldagrepladllgqrvEALDLFDRLQLQAVLEVCRG 487
Cdd:COG2204 345 ---WPGNVRELENVIERAVILADGEVITAEDLP---------------------------EALEEVERELIERALEETGG 394
|
330 340 350
....*....|....*....|....*....|....*.
gi 15599777 488 AKTlsEAGRRLfAVSRQdkrnpndadRLRKYLARFG 523
Cdd:COG2204 395 NVS--RAAELL-GISRR---------TLYRKLKKYG 418
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
163-504 |
8.55e-69 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 227.73 E-value: 8.55e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 163 DLSRYDRIASRFRREQEESLALLK---SGIATRNAAFNRSIEQIERVAvRSRAPMLLVGPTGAGKSFLARRIYEL-KRSr 238
Cdd:COG3829 111 DITELKRLERKLREEELERGLSAKytfDDIIGKSPAMKELLELAKRVA-KSDSTVLILGESGTGKELFARAIHNAsPRR- 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 239 hqlDGRFVEVNCAtlrgdgAM------SALFGHVKGAFTGA-QNAREGLLRAADGGMLFLDEIGELGADEQAMLLKAIEE 311
Cdd:COG3829 189 ---DGPFVAVNCA------AIpenlleSELFGYEKGAFTGAkKGGKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQE 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 312 KRFFPLGSDREVESDFQLIAGTHRDLRGRVAEGLFREDLFARINLWTFELPGLAGRREDIEPNIDFELERHAREQGRQV- 390
Cdd:COG3829 260 KEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIk 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 391 RFNLEAKRRYLAFagsseaRWAGNFRELSASITRMATLADSGRIDEALVEEEILRLRQAwGLDAGREPLAdllgqrvEAL 470
Cdd:COG3829 340 GISPEALELLLAY------DWPGNVRELENVIERAVVLSEGDVITPEHLPEYLLEEAEA-ASAAEEGSLK-------EAL 405
|
330 340 350
....*....|....*....|....*....|....
gi 15599777 471 DLFDRLQLQAVLEVCRGakTLSEAGRRLfAVSRQ 504
Cdd:COG3829 406 EEVEKELIEEALEKTGG--NKSKAAKAL-GISRS 436
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
189-355 |
4.01e-63 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 203.79 E-value: 4.01e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 189 IATRNAAFNRSIEQIERVAvRSRAPMLLVGPTGAGKSFLARRIYELKRSRhqlDGRFVEVNCATLRGDGAMSALFGHVKG 268
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVA-PTDAPVLITGESGTGKELFARAIHQLSPRA---DGPFVAVNCAAIPEELLESELFGHEKG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 269 AFTGAQNAREGLLRAADGGMLFLDEIGELGADEQAMLLKAIEEKRFFPLGSDREVESDFQLIAGTHRDLRGRVAEGLFRE 348
Cdd:pfam00158 77 AFTGADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFRE 156
|
....*..
gi 15599777 349 DLFARIN 355
Cdd:pfam00158 157 DLYYRLN 163
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
187-503 |
4.90e-59 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 206.29 E-value: 4.90e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 187 SGIATRNAAFNRSIEQIERVAvRSRAPMLLVGPTGAGKSFLARRIYELKRSRhqlDGRFVEVNCATLRGDGAMSALFGHV 266
Cdd:COG3284 321 AALAGGDPAMRRALRRARRLA-DRDIPVLILGETGTGKELFARAIHAASPRA---DGPFVAVNCAAIPEELIESELFGYE 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 267 KGAFTGAQ-NAREGLLRAADGGMLFLDEIGELGADEQAMLLKAIEEKRFFPLGSDREVESDFQLIAGTHRDLRGRVAEGL 345
Cdd:COG3284 397 PGAFTGARrKGRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAGR 476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 346 FREDLFARINLWTFELPGLAgRREDIEPNIDFELERHAREQGRqVRFNLEAKRRYLAFagsseaRWAGNFRELSASITRM 425
Cdd:COG3284 477 FREDLYYRLNGLTLTLPPLR-EREDLPALIEHLLRELAAGRGP-LRLSPEALALLAAY------PWPGNVRELRNVLRTA 548
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15599777 426 ATLADSGRIDEALVEEEILRLRQAwgldagREPLADLLGQRVEALdlfDRLQLQAVLEVCRGakTLSEAGRRLfAVSR 503
Cdd:COG3284 549 LALADGGVITVEDLPDELRAELAA------AAPAAAAPLTSLEEA---ERDAILRALRACGG--NVSAAARAL-GISR 614
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
130-436 |
2.91e-57 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 199.56 E-value: 2.91e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 130 EARYLP--ARLV-QTSPSRRKDEARHPEGSATLIDLDLSRYDRIASRFRREQeeslaLLKSGIATRNAAFNRSIEQIERV 206
Cdd:TIGR01817 141 EVRFLEmvANLIgQTVRLHRLVAQRRERLIAEAVQLSKQLRDKAPEIARRRS-----GKEDGIIGKSPAMRQVVDQARVV 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 207 AvRSRAPMLLVGPTGAGKSFLARRIYELKRSRHqldGRFVEVNCATLRGDGAMSALFGHVKGAFTGAQNAREGLLRAADG 286
Cdd:TIGR01817 216 A-RSNSTVLLRGESGTGKELIAKAIHYLSPRAK---RPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADG 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 287 GMLFLDEIGELGADEQAMLLKAIEEKRFFPLGSDREVESDFQLIAGTHRDLRGRVAEGLFREDLFARINLWTFELPGLAG 366
Cdd:TIGR01817 292 GTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRE 371
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 367 RREDIEPNIDFELERHAREQGRQVRFNLEAKRRYlafagsSEARWAGNFRELSASITRMATLADSGRIDE 436
Cdd:TIGR01817 372 RREDIPLLAEAFLEKFNRENGRPLTITPSAIRVL------MSCKWPGNVRELENCLERTATLSRSGTITR 435
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
189-525 |
6.56e-49 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 175.03 E-value: 6.56e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 189 IATRNAAFNRSIEQIERVAvRSRAPMLLVGPTGAGKSFLARRIYelkRSRHQLDGRFVEVNCATLRGDGAMSALFGHVKG 268
Cdd:PRK15115 136 IVTRSPLMLRLLEQARMVA-QSDVSVLINGQSGTGKEILAQAIH---NASPRASKPFIAINCGALPEQLLESELFGHARG 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 269 AFTGAQNAREGLLRAADGGMLFLDEIGELGADEQAMLLKAIEEKRFFPLGSDREVESDFQLIAGTHRDLRGRVAEGLFRE 348
Cdd:PRK15115 212 AFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFRE 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 349 DLFARINLWTFELPGLAGRREDIePNIDFELERHAREQGR-QVR-FNLEAKRRYLAfagsseARWAGNFRELSASITRMA 426
Cdd:PRK15115 292 DLYYRLNVVSLKIPALAERTEDI-PLLANHLLRQAAERHKpFVRaFSTDAMKRLMT------ASWPGNVRQLVNVIEQCV 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 427 TLADSGRIDEALVEEEIlrlrqawgldAGREplaDLLGQRVEALDLFDRLQLQAVLEVCRGAKTlseagrrlfAVSRQDK 506
Cdd:PRK15115 365 ALTSSPVISDALVEQAL----------EGEN---TALPTFVEARNQFELNYLRKLLQITKGNVT---------HAARMAG 422
|
330
....*....|....*....
gi 15599777 507 RNPNDadrLRKYLARFGLD 525
Cdd:PRK15115 423 RNRTE---FYKLLSRHELD 438
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
200-435 |
3.10e-45 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 166.52 E-value: 3.10e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 200 IEQIERVAVrSRAPMLLVGPTGAGKSFLARriyelkrSRHQLDGR----FVEVNCATLRGDGAMSALFGHVKGAFTGAQN 275
Cdd:COG3283 217 IRQAKKMAM-LDAPLLIQGETGTGKELLAR-------ACHLASPRgdkpFLALNCAALPDDVAESELFGYAPGAFGNARE 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 276 AREGLLRAADGGMLFLDEIGELGADEQAMLLKAIEEKRFFPLGSDREVESDFQLIAGTHRDLRGRVAEGLFREDLFARIN 355
Cdd:COG3283 289 GKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFREDLYYRLN 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 356 LWTFELPGLAGRREDIEPNIDFELERHAREQGR-QVRFNLEAKRRYLAFagsseaRWAGNFRELSASITRMATLADSGRI 434
Cdd:COG3283 369 VLTLTLPPLRERKSDILPLAEHFVARFSQQLGRpRPRLSPDLVDFLQSY------PWPGNVRQLENALYRAVSLLEGDEL 442
|
.
gi 15599777 435 D 435
Cdd:COG3283 443 T 443
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
186-498 |
9.11e-45 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 163.66 E-value: 9.11e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 186 KSGIATRNAAFNRSIEQIERVAvRSRAPMLLVGPTGAGKSFLARRIYElkrSRHQLDGRFVEVNCATLRGDGAMSALFGH 265
Cdd:PRK10365 138 QFGMVGKSPAMQHLLSEIALVA-PSEATVLIHGDSGTGKELVARAIHA---SSARSEKPLVTLNCAALNESLLESELFGH 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 266 VKGAFTGAQNAREGLLRAADGGMLFLDEIGELGADEQAMLLKAIEEKRFFPLGSDREVESDFQLIAGTHRDLRGRVAEGL 345
Cdd:PRK10365 214 EKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGR 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 346 FREDLFARINLWTFELPGLAGRREDIEPNIDFELERHAREQGRQVR-FNLEAKRRYLAFAgssearWAGNFRELSASITR 424
Cdd:PRK10365 294 FRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKgFTPQAMDLLIHYD------WPGNIRELENAVER 367
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15599777 425 MATLADSGRIDEalveeeilrlrQAWGLDAGREPLADLLGQRVEALDLFDRLQLQAVLEVCRGAKTlsEAGRRL 498
Cdd:PRK10365 368 AVVLLTGEYISE-----------RELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKT--EAARQL 428
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
171-487 |
8.35e-43 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 158.37 E-value: 8.35e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 171 ASRFRREQEESLALLKS-------GIATRNAAFNRSIEQIERVAvRSRAPMLLVGPTGAGKSFLARRIYELKRSRhqlDG 243
Cdd:TIGR02915 116 AFHLYTLETENRRLQSAlggtalrGLITSSPGMQKICRTIEKIA-PSDITVLLLGESGTGKEVLARALHQLSDRK---DK 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 244 RFVEVNCATLRGDGAMSALFGHVKGAFTGAQNAREGLLRAADGGMLFLDEIGELGADEQAMLLKAIEEKRFFPLGSDREV 323
Cdd:TIGR02915 192 RFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEI 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 324 ESDFQLIAGTHRDLRGRVAEGLFREDLFARINLWTFELPGLAGRREDIEPNIDFELERHAREQGRQVRFNLEAKRRYLaf 403
Cdd:TIGR02915 272 PVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRAL-- 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 404 agssEA-RWAGNFRELSASITRMATLADSGRIDEALVeeeilrlrqawGLDAGREPLADLLGQRVEALDLFDRLQLQAVL 482
Cdd:TIGR02915 350 ----EAhAWPGNVRELENKVKRAVIMAEGNQITAEDL-----------GLDARERAETPLEVNLREVRERAEREAVRKAI 414
|
....*
gi 15599777 483 EVCRG 487
Cdd:TIGR02915 415 ARVDG 419
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
188-490 |
2.02e-42 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 157.32 E-value: 2.02e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 188 GIATRNAAFNRSIEQIERVAvRSRAPMLLVGPTGAGKSFLARRI-YELKRSrhqlDGRFVEVNCATLRGDGAMSALFGHV 266
Cdd:PRK11361 144 HILTNSPAMMDICKDTAKIA-LSQASVLISGESGTGKELIARAIhYNSRRA----KGPFIKVNCAALPESLLESELFGHE 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 267 KGAFTGAQNAREGLLRAADGGMLFLDEIGELGADEQAMLLKAIEEKRFFPLGSDREVESDFQLIAGTHRDLRGRVAEGLF 346
Cdd:PRK11361 219 KGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTF 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 347 REDLFARINLWTFELPGLAGRREDIEPNIDFELERHAREQGRQVR-FNLEAKRRYLAFAgssearWAGNFRELSASITRm 425
Cdd:PRK11361 299 REDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIdIDPMAMSLLTAWS------WPGNIRELSNVIER- 371
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15599777 426 ATLADSGRIdeALVEEEILRLRQAWGLDAGREPLADllGQR--VEALDLFDRLQLQAVLEVCRGAKT 490
Cdd:PRK11361 372 AVVMNSGPI--IFSEDLPPQIRQPVCNAGEVKTAPV--GERnlKEEIKRVEKRIIMEVLEQQEGNRT 434
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
201-487 |
1.30e-41 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 156.10 E-value: 1.30e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 201 EQIERVAVrSRAPMLLVGPTGAGKSFLARRIYEL-KRSRHQLdgrfVEVNCATLRGDGAMSALFGHVKGAFTGAQNAREG 279
Cdd:PRK05022 201 KEIEVVAA-SDLNVLILGETGVGKELVARAIHAAsPRADKPL----VYLNCAALPESLAESELFGHVKGAFTGAISNRSG 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 280 LLRAADGGMLFLDEIGELGADEQAMLLKAIEEKRFFPLGSDREVESDFQLIAGTHRDLRGRVAEGLFREDLFARINLWTF 359
Cdd:PRK05022 276 KFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPL 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 360 ELPGLAGRREDIEPNIDFELERHAREQG-RQVRFNLEAKRRYLAFagsseaRWAGNFRELSASITRMATLADSGRIDEAL 438
Cdd:PRK05022 356 SVPPLRERGDDVLLLAGYFLEQNRARLGlRSLRLSPAAQAALLAY------DWPGNVRELEHVISRAALLARARGAGRIV 429
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 15599777 439 V-EEEILRLRQAWGLDAGREPLADLLGQRV---EALDLFDRLQLQAVLEVCRG 487
Cdd:PRK05022 430 TlEAQHLDLPAEVALPPPEAAAAPAAVVSQnlrEATEAFQRQLIRQALAQHQG 482
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
209-498 |
3.68e-41 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 154.13 E-value: 3.68e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 209 RSRAPMLLVGPTGAGKSFLARRIY-ELKRSRhqldGRFVEVNCATLRGDGAMSALFGHVKGAFTGAQNAREGLLRAADGG 287
Cdd:TIGR01818 155 RSDITVLINGESGTGKELVARALHrHSPRAN----GPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGG 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 288 MLFLDEIGELGADEQAMLLKAIEEKRFFPLGSDREVESDFQLIAGTHRDLRGRVAEGLFREDLFARINLWTFELPGLAGR 367
Cdd:TIGR01818 231 TLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRER 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 368 REDIEPNIDFELERHAREQGRQVRF----NLEAKRRYlafagsseaRWAGNFRELSAS---ITRMAT------------L 428
Cdd:TIGR01818 311 REDIPRLARHFLALAARELDVEPKLldpeALERLKQL---------RWPGNVRQLENLcrwLTVMASgdevlvsdlpaeL 381
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15599777 429 ADSGRIDEALVEEEILRLRQA---WGLDAGREPLADLLGqrvEALDLFDRLQLQAVLEVCRGAKtlSEAGRRL 498
Cdd:TIGR01818 382 ALTGRPASAPDSDGQDSWDEAleaWAKQALSRGEQGLLD---RALPEFERPLLEAALQHTRGHK--QEAAALL 449
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
189-428 |
1.39e-39 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 153.06 E-value: 1.39e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 189 IATRNAAFNRSIEQIERVAvRSRAPMLLVGPTGAGKSFLARRIYELKRSRHQldgRFVEVNCATLRGDGAMSALFGHVKG 268
Cdd:PRK15429 378 IIGRSEAMYSVLKQVEMVA-QSDSTVLILGETGTGKELIARAIHNLSGRNNR---RMVKMNCAAMPAGLLESDLFGHERG 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 269 AFTGAQNAREGLLRAADGGMLFLDEIGELGADEQAMLLKAIEEKRFFPLGSDREVESDFQLIAGTHRDLRGRVAEGLFRE 348
Cdd:PRK15429 454 AFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 349 DLFARINLWTFELPGLAGRREDIEPNIDFELERHAREQGRQVRFNLEAKRRYLafagsSEARWAGNFRELSASITRMATL 428
Cdd:PRK15429 534 DLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTL-----SNMEWPGNVRELENVIERAVLL 608
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
209-498 |
1.29e-37 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 144.24 E-value: 1.29e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 209 RSRAPMLLVGPTGAGKSFLArriYELKRSRHQLDGRFVEVNCATLRGDGAMSALFGHVKGAFTGAQNAREGLLRAADGGM 288
Cdd:PRK10923 159 RSSISVLINGESGTGKELVA---HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 289 LFLDEIGELGADEQAMLLKAIEEKRFFPLGSDREVESDFQLIAGTHRDLRGRVAEGLFREDLFARINLWTFELPGLAGRR 368
Cdd:PRK10923 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERR 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 369 EDIEPNIDFELERHAREQGrqvrfnLEAKRRYL-AFAGSSEARWAGNFRELSaSITRMATLADSGRidEALVEEEILRLR 447
Cdd:PRK10923 316 EDIPRLARHFLQVAARELG------VEAKLLHPeTEAALTRLAWPGNVRQLE-NTCRWLTVMAAGQ--EVLIQDLPGELF 386
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15599777 448 QA--------------------WGLDAGREPLADLLGqrvEALDLFDRLQLQAVLEVCRGAKtlSEAGRRL 498
Cdd:PRK10923 387 EStvpestsqmqpdswatllaqWADRALRSGHQNLLS---EAQPELERTLLTTALRHTQGHK--QEAARLL 452
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
200-427 |
5.86e-35 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 137.51 E-value: 5.86e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 200 IEQIERVAVRSrAPMLLVGPTGAGKSFLARRIYeLKRSRhqldGR--FVEVNCATLRGDGAMSALFGHVKGAFTGAQNAR 277
Cdd:PRK10820 217 VEQARKLAMLD-APLLITGDTGTGKDLLAYACH-LRSPR----GKkpFLALNCASIPDDVVESELFGHAPGAYPNALEGK 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 278 EGLLRAADGGMLFLDEIGELGADEQAMLLKAIEEKRFFPLGSDREVESDFQLIAGTHRDLRGRVAEGLFREDLFARINLW 357
Cdd:PRK10820 291 KGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVL 370
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15599777 358 TFELPGLAGRREDIEPNIDFELERHAREQGrQVRFNLEAK-RRYLAFAGssearWAGNFRELSASITRMAT 427
Cdd:PRK10820 371 TLNLPPLRDRPQDIMPLTELFVARFADEQG-VPRPKLAADlNTVLTRYG-----WPGNVRQLKNAIYRALT 435
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
209-503 |
1.95e-33 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 133.69 E-value: 1.95e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 209 RSRAPMLLVGPTGAGKSFLARRI-------YELKRSRHQldGRFVEVNCATLRGDGAMSALFGHVKGAFTGAQ-NAREGL 280
Cdd:PRK15424 240 RSSAAVLIQGETGTGKELAAQAIhreyfarHDARQGKKS--HPFVAVNCGAIAESLLEAELFGYEEGAFTGSRrGGRAGL 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 281 LRAADGGMLFLDEIGELGADEQAMLLKAIEEKRFFPLGSDREVESDFQLIAGTHRDLRGRVAEGLFREDLFARINLWTFE 360
Cdd:PRK15424 318 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQ 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 361 LPGLAGRREDIEPNIDFELERHAReqGRQVRFNLEAKRRYLAFAGSSEA-RWAGNFRELSASITRMATLADSGRIDeALV 439
Cdd:PRK15424 398 LPPLRERVADILPLAESFLKQSLA--ALSAPFSAALRQGLQQCETLLLHyDWPGNVRELRNLMERLALFLSVEPTP-DLT 474
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15599777 440 EEEILRLRQAWGLDAgreplADLLGQRVEAldlfdrLQLQAVLEVCRGAKtlsEAGRRLFAVSR 503
Cdd:PRK15424 475 PQFLQLLLPELARES-----AKTPAPRLLA------ATLQQALERFNGDK---TAAANYLGISR 524
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
200-426 |
2.34e-31 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 127.28 E-value: 2.34e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 200 IEQIERVAVRSRAPMLLVGPTGAGKSFLARRIYELKRSRhqlDGRFVEVNCATLRGDGAMSALFGHVKGAFTGA-QNARE 278
Cdd:TIGR02329 224 VRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRR---DFPFVAINCGAIAESLLEAELFGYEEGAFTGArRGGRT 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 279 GLLRAADGGMLFLDEIGELGADEQAMLLKAIEEKRFFPLGSDREVESDFQLIAGTHRDLRGRVAEGLFREDLFARINLWT 358
Cdd:TIGR02329 301 GLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILR 380
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 359 FELPGLAGRREDIEPNIDFELERHAREQGRQVRfnlEAKRRYLAFAGSSEAR--WAGNFRELSASITRMA 426
Cdd:TIGR02329 381 IALPPLRERPGDILPLAAEYLVQAAAALRLPDS---EAAAQVLAGVADPLQRypWPGNVRELRNLVERLA 447
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
213-333 |
2.85e-29 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 122.52 E-value: 2.85e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 213 PMLLVGPTGAGKSFLARRIYE--LKRSRHQLDGRFVEVNCAtlrgDGA------MSALFGHVKGAFTGAQNAREGLLRAA 284
Cdd:COG1221 132 HTLILGPTGVGKSFFAELMYEyaIEIGVLPEDAPFVVFNCA----DYAnnpqllMSQLFGYVKGAFTGADKDKEGLIEKA 207
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 15599777 285 DGGMLFLDEIGELGADEQAMLLKAIEEKRFFPLG-SDREVESDFQLIAGT 333
Cdd:COG1221 208 DGGILFLDEVHRLPPEGQEMLFTFMDKGIYRRLGeTEKTRKANVRIIFAT 257
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
195-424 |
1.01e-28 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 116.31 E-value: 1.01e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 195 AFNRSIEQIERVAVRSRaPMLLVGPTGAGKSFLARRIYELKrSRHQldGRFVEVNCATLRGDGAMSALFGHVKGAFTGAQ 274
Cdd:PRK11608 14 SFLEVLEQVSRLAPLDK-PVLIIGERGTGKELIASRLHYLS-SRWQ--GPFISLNCAALNENLLDSELFGHEAGAFTGAQ 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 275 NAREGLLRAADGGMLFLDEIGELGADEQAMLLKAIEEKRFFPLGSDREVESDFQLIAGTHRDLRGRVAEGLFREDLFARI 354
Cdd:PRK11608 90 KRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15599777 355 NLWTFELPGLAGRREDIEPNIDFELERHAREQGRQV--RFNLEAKRRYLAFagsseaRWAGNFRELSASITR 424
Cdd:PRK11608 170 AFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLfpGFTERARETLLNY------RWPGNIRELKNVVER 235
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
205-487 |
1.38e-27 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 117.09 E-value: 1.38e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 205 RVAVRSRAPMLLVGPTGAGKSFLARRIYElkrSRHQLDGRFVEVNCATLRGDGAMSALFGhvkGAFTGAQNAREGLLRAA 284
Cdd:PRK11388 342 RQAAKSSFPVLLCGEEGVGKALLAQAIHN---ESERAAGPYIAVNCQLYPDEALAEEFLG---SDRTDSENGRLSKFELA 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 285 DGGMLFLDEIGELGADEQAMLLKAIEEKRFFPLGSDREVESDFQLIAGTHRDLRGRVAEGLFREDLFARINLWTFELPGL 364
Cdd:PRK11388 416 HGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPL 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 365 AGRREDIEPNIDFELERHAREQGRQVRFNLEAKRRYLAFagsseaRWAGNFRELSASITRMATLADSGRID-EALveEEI 443
Cdd:PRK11388 496 RMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSY------RWPGNDFELRSVIENLALSSDNGRIRlSDL--PEH 567
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 15599777 444 LRLRQAwGLDAGREPLADLLGqrvealdlFDRLQLQAVLE---VCRG 487
Cdd:PRK11388 568 LFTEQA-TDDVSATRLSTSLS--------LAELEKEAIINaaqVCGG 605
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
198-498 |
1.19e-25 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 107.63 E-value: 1.19e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 198 RSIEQIERVAvrSRAPMLLVGPTGAGKSFLARRIYELKRSRhqlDGRFVEVNCATLrgdgamsalfghvkgaftgaqnar 277
Cdd:COG3604 104 EDLRLLETLA--SLAAVAILGETGTGKELVANAIHELSPRA---DKPFVKVNCAAL------------------------ 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 278 egllraadggmlfldeigelgadeQAMLLKAIEEKRFFPLGSDREVESDFQLIAGTHRDLRGRVAEGLFREDLFARINLW 357
Cdd:COG3604 155 ------------------------PESLLESLQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVF 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 358 TFELPGLAGRREDIEPNIDFELERHAREQGRQV-RFNLEAKRRYLAFAgssearWAGNFRELSASITRMATLADSGRIDe 436
Cdd:COG3604 211 PIRLPPLRERREDIPLLAEHFLEKFSRRLGKPIlRLSPEALEALMAYP------WPGNVRELENVIERAVILAEGGVLD- 283
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15599777 437 alveeeilrlrqawgldagrepLADLLGQRVEALDLFDRLQLQAVLEVCRGAKtlSEAGRRL 498
Cdd:COG3604 284 ----------------------ADDLAPGSREALEEVEREHILEALERTGGNI--AGAARLL 321
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
203-356 |
1.94e-18 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 82.19 E-value: 1.94e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 203 IERVAVRSRAPMLLVGPTGAGKSFLARRI-YELKRSRHqldgRFVEVNCATLRGDGAMSALFGHVkgaftgAQNAREGLL 281
Cdd:cd00009 11 REALELPPPKNLLLYGPPGTGKTTLARAIaNELFRPGA----PFLYLNASDLLEGLVVAELFGHF------LVRLLFELA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15599777 282 RAADGGMLFLDEIGELGADEQAMLLKAIEEKRFFplgsdREVESDFQLIAGTHRDLrgrvaEGLFREDLFARINL 356
Cdd:cd00009 81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDL-----RIDRENVRVIGATNRPL-----LGDLDRALYDRLDI 145
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
194-364 |
1.13e-12 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 65.44 E-value: 1.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 194 AAFNRSIEQIervaVRSRAPMLLVGPTGAGKSFLARRIyelkrsrHQLDGRFVE-VNCATLrgdgamsalfghvkgaftg 272
Cdd:pfam14532 8 QEIKRRLEQA----AQSTLPVFLTGEPGSGKEFCARYL-------HNPSTPWVQpFDIEYL------------------- 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 273 aQNAREGLLRAADGGMLFLDEIGELGADEQAMLLKAIeekrffplgsDREVESDFQLIAGTHRDLRGRVAEGLFREDLFA 352
Cdd:pfam14532 58 -AHAPLELLEQAKGGTLYLKDIADLSKALQKGLLLLL----------AKAEGYRVRLVCTSSKDLPQLAAAGLFDEQLYF 126
|
170
....*....|..
gi 15599777 353 RINLWTFELPGL 364
Cdd:pfam14532 127 ELSALRLHVPPL 138
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
213-353 |
6.96e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 57.77 E-value: 6.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 213 PMLLVGPTGAGKSFLARRI-YELKRSrhqlDGRFVEVNCATLR---GDGAMSALFGHVKGAFTGAQNAREG--LLRAADG 286
Cdd:smart00382 4 VILIVGPPGSGKTTLARALaRELGPP----GGGVIYIDGEDILeevLDQLLLIIVGGKKASGSGELRLRLAlaLARKLKP 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15599777 287 GMLFLDEIGELGADEQAMLLKAIEEKRffpLGSDREVESDFQLIAGTHR--DLRGRVAEGLFREDLFAR 353
Cdd:smart00382 80 DVLILDEITSLLDAEQEALLLLLEELR---LLLLLKSEKNLTVILTTNDekDLGPALLRRRFDRRIVLL 145
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
213-335 |
4.39e-06 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 46.13 E-value: 4.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 213 PMLLVGPTGAGKSFLARRIyelkrSRHQLDGRFVEVNCatlRGDGAMSALFGHVKGAFTGAQNAREGLLRAA-DGGMLFL 291
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERL-----AAALSNRPVFYVQL---TRDTTEEDLFGRRNIDPGGASWVDGPLVRAArEGEIAVL 72
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 15599777 292 DEIGELGADEQAMLLKAIEEKRFFPLGSDREV---ESDFQLIAGTHR 335
Cdd:pfam07728 73 DEINRANPDVLNSLLSLLDERRLLLPDGGELVkaaPDGFRLIATMNP 119
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
31-314 |
1.54e-04 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 44.13 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 31 IGLCQQPDLLIDRLELIHGNDARDLGLAERIRADIAAVSPHTEVRLQQMELRNPWDFEEVYGALHDFVSAYPFDTEREDY 110
Cdd:COG0464 2 AELLALAVALALALLLLDDAALRLLLLLLLALAAALLLLLLLLLLLLLALLLVELLLLLLSGALAALLLLALLLLALLAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 111 LVHITTGTHVAQICWFLLTEARYLPARLVQTSPSRRKDEARHPEGSATLIDLDLSRYDRIASRFRREQEES--------- 181
Cdd:COG0464 82 LAALLSALELLLLGELLLLLLLLLLLLLLLLDLERALLELLRESAEALALAAPLVTYEDIGGLEEELLELReailddlgg 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 182 LALLKSGIATRNAAFNRSIEQIERVAVRSRAPMLLVGPTGAGKSFLARRIyelkrsRHQLDGRFVEVNCATLrgdgaMSA 261
Cdd:COG0464 162 LEEVKEELRELVALPLKRPELREEYGLPPPRGLLLYGPPGTGKTLLARAL------AGELGLPLIEVDLSDL-----VSK 230
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15599777 262 LFGHvkgaftGAQNAREgLLRAADG---GMLFLDEIGELGAD-----------EQAMLLKAIEEKRF 314
Cdd:COG0464 231 YVGE------TEKNLRE-VFDKARGlapCVLFIDEADALAGKrgevgdgvgrrVVNTLLTEMEELRS 290
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
210-341 |
3.95e-04 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 40.40 E-value: 3.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 210 SRAPMLLVGPTGAGKSFLARRiyeLKRSRHQLDGRFVEVNCAtlrGDGAMSALFGHVKGAFTGAQNAR-----------E 278
Cdd:pfam13401 4 GAGILVLTGESGTGKTTLLRR---LLEQLPEVRDSVVFVDLP---SGTSPKDLLRALLRALGLPLSGRlskeellaalqQ 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15599777 279 GLLRAADGGMLFLDEIgelgadeQAMLLKAIEEKRFFplgsDREVESDFQLI-AGTHrDLRGRV 341
Cdd:pfam13401 78 LLLALAVAVVLIIDEA-------QHLSLEALEELRDL----LNLSSKLLQLIlVGTP-ELRELL 129
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
214-340 |
5.40e-04 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 40.27 E-value: 5.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 214 MLLVGPTGAGKSFLARRIYelkrsrHQLDGRFVEVNCATLRgDGAMSALFGHVKGAFTGAQNAREGLlraadggmLFLDE 293
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVA------KELGAPFIEISGSELV-SKYVGESEKRLRELFEAAKKLAPCV--------IFIDE 65
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15599777 294 I-----------GELGADEQAMLLKAIEEKrffplgsdREVESDFQLIAGTHR------DLRGR 340
Cdd:pfam00004 66 IdalagsrgsggDSESRRVVNQLLTELDGF--------TSSNSKVIVIAATNRpdkldpALLGR 121
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
214-300 |
6.00e-03 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 38.71 E-value: 6.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599777 214 MLLVGPTGAGKSFLARRIyelkrsRHQLDGRFVEVNCATLrgdgaMSALFGhvkgafTGAQNAREGLLRAA-DGGMLFLD 292
Cdd:COG1223 38 ILFYGPPGTGKTMLAEAL------AGELKLPLLTVRLDSL-----IGSYLG------ETARNLRKLFDFARrAPCVIFFD 100
|
....*...
gi 15599777 293 EIGELGAD 300
Cdd:COG1223 101 EFDAIAKD 108
|
|
| |
