NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15599699|ref|NP_253193|]
View 

ABC transporter permease [Pseudomonas aeruginosa PAO1]

Protein Classification

ABC transporter permease( domain architecture ID 30)

ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters which generally bind type 2 PBPs

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TM_PBP2 super family cl00427
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 1-336 1.18e-162

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


The actual alignment was detected with superfamily member PRK10914:

Pssm-ID: 444901 [Multi-domain]  Cd Length: 339  Bit Score: 457.35  E-value: 1.18e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699    1 MLSFIARRLGLLIPTFFGVTLLTFALIRLIPGDPVEVMMGERRVDPQMHAEALHRLGLDKPLYQQYLDYVGNLAQGNLGK 80
Cdd:PRK10914   1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699   81 SIRTHEPVWNEFLTLFSATLELSFAAMLFAGTLGLLAGVVAALKRGSIFDHGVMTISLAGYSMPIFWWGLLLIMLFSVSL 160
Cdd:PRK10914  81 SLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699  161 GWTPVSDRIG---VLYEVEPKTGFMLIDTLLSDEEGAFLDAVRHLILPAIVLGTIPLAVIARMTRSAMLEVLREDYVRTA 237
Cdd:PRK10914 161 NLTPVSGRVSdmvFLDDSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTA 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699  238 RAKGLSPARVVFVHALRNALIPVLTVLGLQVGTLLAGAVLTETIFSWPGIGKWLIDAISARDYPVVQNGILLVATLVILV 317
Cdd:PRK10914 241 RAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILV 320

                        330
                 ....*....|....*....
gi 15599699  318 NFVVDILYGLANPRIRHQR 336
Cdd:PRK10914 321 NLLVDLLYGVVNPRIRHKK 339
 
Name Accession Description Interval E-value
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
1-336 1.18e-162

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 457.35  E-value: 1.18e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699    1 MLSFIARRLGLLIPTFFGVTLLTFALIRLIPGDPVEVMMGERRVDPQMHAEALHRLGLDKPLYQQYLDYVGNLAQGNLGK 80
Cdd:PRK10914   1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699   81 SIRTHEPVWNEFLTLFSATLELSFAAMLFAGTLGLLAGVVAALKRGSIFDHGVMTISLAGYSMPIFWWGLLLIMLFSVSL 160
Cdd:PRK10914  81 SLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699  161 GWTPVSDRIG---VLYEVEPKTGFMLIDTLLSDEEGAFLDAVRHLILPAIVLGTIPLAVIARMTRSAMLEVLREDYVRTA 237
Cdd:PRK10914 161 NLTPVSGRVSdmvFLDDSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTA 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699  238 RAKGLSPARVVFVHALRNALIPVLTVLGLQVGTLLAGAVLTETIFSWPGIGKWLIDAISARDYPVVQNGILLVATLVILV 317
Cdd:PRK10914 241 RAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILV 320

                        330
                 ....*....|....*....
gi 15599699  318 NFVVDILYGLANPRIRHQR 336
Cdd:PRK10914 321 NLLVDLLYGVVNPRIRHKK 339
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-335 1.08e-146

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 416.01  E-value: 1.08e-146
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699   1 MLSFIARRLGLLIPTFFGVTLLTFALIRLIPGDPVEVMMGERrVDPQMHAEALHRLGLDKPLYQQYLDYVGNLAQGNLGK 80
Cdd:COG0601   1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGPR-ATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGT 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699  81 SIRTHEPVWNEFLTLFSATLELSFAAMLFAGTLGLLAGVVAALKRGSIFDHGVMTISLAGYSMPIFWWGLLLIMLFSVSL 160
Cdd:COG0601  80 SFVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKL 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699 161 GWTPVSDRIGVLyevepktgfmlidtllsdeeGAFLDAVRHLILPAIVLGTIPLAVIARMTRSAMLEVLREDYVRTARAK 240
Cdd:COG0601 160 GWLPVSGRVSPW--------------------EDFLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAK 219

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699 241 GLSPARVVFVHALRNALIPVLTVLGLQVGTLLAGAVLTETIFSWPGIGKWLIDAISARDYPVVQNGILLVATLVILVNFV 320
Cdd:COG0601 220 GLSERRVLLRHALRNALIPVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLL 299

                       330
                ....*....|....*
gi 15599699 321 VDILYGLANPRIRHQ 335
Cdd:COG0601 300 VDLLYALLDPRIRLG 314
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 1-333 4.02e-75

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 233.88  E-value: 4.02e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699     1 MLSFIARRLGLLIPTFFGVTLLTFALIRLIPGDPVEVMMGERRVDP--QMHAEALHRLGLDKPLYQQYLDYVGNLAQGNL 78
Cdd:TIGR02789   1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDPAEDYLRLSHIPPtdEAIADMRHSLGLDQPLYVQYFHWLWNALHLDF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699    79 GKSIRTHEPVWNEFLTLFSATLELSFAAMLFAGTLGLLAGVVAALKRGSIFDHGVMTISLAGYSMPIFWWGLLLIMLFSV 158
Cdd:TIGR02789  81 GISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699   159 SLGWTPVSDRIGVlyevepktgfmlidtllsdeegafldavRHLILPAIVLGTIPLAVIARMTRSAMLEVLREDYVRTAR 238
Cdd:TIGR02789 161 YLNLLPTNGAGTW----------------------------QHLVLPAVTLALMSVSIYARLLRASMLDNMQERYVTYAR 212

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699   239 AKGLSPARVVFVHALRNALIPVLTVLGLQVGTLLAGAVLTETIFSWPGIGKWLIDAISARDYPVVQNGILLVATLVILVN 318
Cdd:TIGR02789 213 VRGIKERWVIRRHILRNAILPMITALGMHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCN 292

                         330
                  ....*....|....*
gi 15599699   319 FVVDILYGLANPRIR 333
Cdd:TIGR02789 293 LIVDLFQALLDPRIR 307
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 114-334 9.39e-30

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 112.01  E-value: 9.39e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699   114 GLLAGVVAALKRGSIFDHGVMTISLAGYSMPIFWWGLLLIMLFsvslgwtpvsdrigvlyevepktgfmlidtllsdeeg 193
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA------------------------------------- 43

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699   194 aFLDAVRHLILPAIVLGTIPLAVIARMTRSAMLEVLREDYVRTARAKGLSPARVVFVHALRNALIPVLTVLGLQVGTLLA 273
Cdd:pfam00528  44 -ILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALG 122

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15599699   274 GAVLTETIFSWPGIGKWLIDAISARDYPVVQNGILLVATLVILVNFVVDILYGLANPRIRH 334
Cdd:pfam00528 123 GAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 99-316 1.72e-20

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 87.33  E-value: 1.72e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699  99 TLELSFAAMLFAGTLGLLAGVVAALKRGSIfDHGVMTISLAGYSMPIFWWGLLLIMLFSVSLGWtpvsdrigvlyevepk 178
Cdd:cd06261   4 TLLLALIATLLALVLGLLLGIILARKRGKL-DRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW---------------- 66

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699 179 tgfmlidtllsdeegaflDAVRHLILPAIVLGTIPLAVIARMTRSAMLEVLREDYVRTARAKGLSPARVVFVHALRNALI 258
Cdd:cd06261  67 ------------------GILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALP 128

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15599699 259 PVLTVLGLQVGTLLAGAVLTETIFS----WPGIGKWLIDAISARDYPVVQNGILLVATLVIL 316
Cdd:cd06261 129 PILTGLVLAFARALGEFALVSFLGGgeapGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
 
Name Accession Description Interval E-value
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
1-336 1.18e-162

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 457.35  E-value: 1.18e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699    1 MLSFIARRLGLLIPTFFGVTLLTFALIRLIPGDPVEVMMGERRVDPQMHAEALHRLGLDKPLYQQYLDYVGNLAQGNLGK 80
Cdd:PRK10914   1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699   81 SIRTHEPVWNEFLTLFSATLELSFAAMLFAGTLGLLAGVVAALKRGSIFDHGVMTISLAGYSMPIFWWGLLLIMLFSVSL 160
Cdd:PRK10914  81 SLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699  161 GWTPVSDRIG---VLYEVEPKTGFMLIDTLLSDEEGAFLDAVRHLILPAIVLGTIPLAVIARMTRSAMLEVLREDYVRTA 237
Cdd:PRK10914 161 NLTPVSGRVSdmvFLDDSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTA 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699  238 RAKGLSPARVVFVHALRNALIPVLTVLGLQVGTLLAGAVLTETIFSWPGIGKWLIDAISARDYPVVQNGILLVATLVILV 317
Cdd:PRK10914 241 RAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILV 320

                        330
                 ....*....|....*....
gi 15599699  318 NFVVDILYGLANPRIRHQR 336
Cdd:PRK10914 321 NLLVDLLYGVVNPRIRHKK 339
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-335 1.08e-146

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 416.01  E-value: 1.08e-146
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699   1 MLSFIARRLGLLIPTFFGVTLLTFALIRLIPGDPVEVMMGERrVDPQMHAEALHRLGLDKPLYQQYLDYVGNLAQGNLGK 80
Cdd:COG0601   1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGPR-ATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGT 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699  81 SIRTHEPVWNEFLTLFSATLELSFAAMLFAGTLGLLAGVVAALKRGSIFDHGVMTISLAGYSMPIFWWGLLLIMLFSVSL 160
Cdd:COG0601  80 SFVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKL 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699 161 GWTPVSDRIGVLyevepktgfmlidtllsdeeGAFLDAVRHLILPAIVLGTIPLAVIARMTRSAMLEVLREDYVRTARAK 240
Cdd:COG0601 160 GWLPVSGRVSPW--------------------EDFLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAK 219

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699 241 GLSPARVVFVHALRNALIPVLTVLGLQVGTLLAGAVLTETIFSWPGIGKWLIDAISARDYPVVQNGILLVATLVILVNFV 320
Cdd:COG0601 220 GLSERRVLLRHALRNALIPVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLL 299

                       330
                ....*....|....*
gi 15599699 321 VDILYGLANPRIRHQ 335
Cdd:COG0601 300 VDLLYALLDPRIRLG 314
SapB COG4168
ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];
1-334 5.98e-108

ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];


Pssm-ID: 443329 [Multi-domain]  Cd Length: 321  Bit Score: 317.93  E-value: 5.98e-108
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699   1 MLSFIARRLGLLIPTFFGVTLLTFALIRLIPGDPVEvmmgerrvdpqmhaealhrlglDKPLYQQYLDYVGNLAQGNLGK 80
Cdd:COG4168   1 MLIYLLRRLNLLLITLLILSLISFSLLYRDPLNPLS----------------------DASLFSGYLFYLQNLLQGDFGI 58

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699  81 SIRTHEPVWNEFLTLFSATLELSFAAMLFAGTLGLLAGVVAALKRGSIFDHGVMTISLAGYSMPIFWWGLLLIMLFSVSL 160
Cdd:COG4168  59 SSINGEPILEQLLTVFPATLELCFLAFLLALLIGIPLGILAGIYRGKWLDKLISSLSLLGFSIPVFWLALLLILFFSLNL 138

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699 161 GWTPVSDRIGVLYEVEPKTGFMLIDTLLSDE---EGAFLDAVRHLILPAIVLGTIPLAVIARMTRSAMLEVLREDYVRTA 237
Cdd:COG4168 139 GWLPVSGRYNLLYEIPPVTGFALIDAWLSDSpyrLKAIQSALQHLILPTLVLAVAPTTEVIRLTRQSTEEVMNQNYIKAA 218

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699 238 RAKGLSPARVVFVHALRNALIPVLTVLGLQVGTLLAGAVLTETIFSWPGIGKWLIDAISARDYPVVQNGILLVATLVILV 317
Cdd:COG4168 219 ATRGLSRFTIIRRHVLRNALPPIIPQLGLQFSTMLTLAMITEVVFSWPGIGRWLINAIRQQDYAAISAGVIVIGTFVIIV 298

                       330
                ....*....|....*..
gi 15599699 318 NFVVDILYGLANPRIRH 334
Cdd:COG4168 299 NILSDILGALLNPLKRK 315
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 1-335 3.46e-88

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 266.96  E-value: 3.46e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699    1 MLSFIARRLGLLIPTFFGVTLLTFALIRLIPGDPVEVMMGeRRVDPQMHAEALHRLGLDKPLYQQYLDYVGNLAQGNLGK 80
Cdd:PRK15081   1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLAAG-PEADAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGT 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699   81 SIRTHEPVWNEFLTLFSATLELSFAAMLFAGTLGLLAGVVAALKRGSIFDHGVMTISLAGYSMPIFWWGLLLIMLFSVSL 160
Cdd:PRK15081  80 SMVSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSVEL 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699  161 GWTPVSdrigvlyevepktgfmlidtllsdeeGAflDAVRHLILPAIVLGTIPLAVIARMTRSAMLEVLREDYVRTARAK 240
Cdd:PRK15081 160 GWLPTV--------------------------GA--DSWQHYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAK 211

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699  241 GLSPARVVFVHALRNALIPVLTVLGLQVGTLLAGAVLTETIFSWPGIGKWLIDAISARDYPVVQNGILLVATLVILVNFV 320
Cdd:PRK15081 212 GVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLV 291

                        330
                 ....*....|....*
gi 15599699  321 VDILYGLANPRIRHQ 335
Cdd:PRK15081 292 VDVLYAAINPAIRYK 306
PRK10352 PRK10352
nickel transporter permease NikB; Provisional
 1-334 9.39e-78

nickel transporter permease NikB; Provisional


Pssm-ID: 182400 [Multi-domain]  Cd Length: 314  Bit Score: 240.75  E-value: 9.39e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699    1 MLSFIARRLGLLIPTFFGVTLLTFALIRLIPGDPVEVMMGERRVDP--QMHAEALHRLGLDKPLYQQYLDYVGNLAQGNL 78
Cdd:PRK10352   1 MLRYILRRLLLLIPMLLAASVIIFLMLRLGTGDPALDYLRLSNLPPtpEMLASTRTMLGLDQPLYVQYGTWLWKALHLDF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699   79 GKSIRTHEPVWNEFLTLFSATLELSFAAMLFAGTLGLLAGVVAALKRGSIFDHGVMTISLAGYSMPIFWWGLLLIMLFSV 158
Cdd:PRK10352  81 GISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699  159 SLGWTPVSDRIGVlyevepktgfmlidtllsdeegafldavRHLILPAIVLGTIPLAVIARMTRSAMLEVLREDYVRTAR 238
Cdd:PRK10352 161 YLQWLPAMGYGGW----------------------------QHIILPAVSIAFMSLAINARLLRASMLEVAGQRHVTWAR 212

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699  239 AKGLSPARVVFVHALRNALIPVLTVLGLQVGTLLAGAVLTETIFSWPGIGKWLIDAISARDYPVVQNGILLVATLVILVN 318
Cdd:PRK10352 213 LRGLSERQVERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCN 292

                        330
                 ....*....|....*.
gi 15599699  319 FVVDILYGLANPRIRH 334
Cdd:PRK10352 293 LIVDLLNAALDPRIRR 308
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 1-333 4.02e-75

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 233.88  E-value: 4.02e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699     1 MLSFIARRLGLLIPTFFGVTLLTFALIRLIPGDPVEVMMGERRVDP--QMHAEALHRLGLDKPLYQQYLDYVGNLAQGNL 78
Cdd:TIGR02789   1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDPAEDYLRLSHIPPtdEAIADMRHSLGLDQPLYVQYFHWLWNALHLDF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699    79 GKSIRTHEPVWNEFLTLFSATLELSFAAMLFAGTLGLLAGVVAALKRGSIFDHGVMTISLAGYSMPIFWWGLLLIMLFSV 158
Cdd:TIGR02789  81 GISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699   159 SLGWTPVSDRIGVlyevepktgfmlidtllsdeegafldavRHLILPAIVLGTIPLAVIARMTRSAMLEVLREDYVRTAR 238
Cdd:TIGR02789 161 YLNLLPTNGAGTW----------------------------QHLVLPAVTLALMSVSIYARLLRASMLDNMQERYVTYAR 212

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699   239 AKGLSPARVVFVHALRNALIPVLTVLGLQVGTLLAGAVLTETIFSWPGIGKWLIDAISARDYPVVQNGILLVATLVILVN 318
Cdd:TIGR02789 213 VRGIKERWVIRRHILRNAILPMITALGMHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCN 292

                         330
                  ....*....|....*
gi 15599699   319 FVVDILYGLANPRIR 333
Cdd:TIGR02789 293 LIVDLFQALLDPRIR 307
PRK15110 PRK15110
peptide ABC transporter permease SapB;
1-330 4.15e-69

peptide ABC transporter permease SapB;


Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 218.79  E-value: 4.15e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699    1 MLSFIARRLGLLIPTFFGVTLLTFALIRLIPGDPVEvmmgerrvdpqmhaealhrlglDKPLYQQYLDYVGNLAQGNLGK 80
Cdd:PRK15110   1 MIIFTLRRLLLLIVTLFLLTLVGFSLSYFTPHAPLQ----------------------GASLWDAWVFWFNGLLHWDFGV 58

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699   81 SIRTHEPVWNEFLTLFSATLELSFAAMLFAGTLGLLAGVVAALKRGSIFDHGVMTISLAGYSMPIFWWGLLLIMLFSVSL 160
Cdd:PRK15110  59 SSINGQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGVTRHKWQDNLISALALLGFSIPVFWLALLLTLFFSLTL 138

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699  161 GWTPVSDRIGVLYEVEPKTGFMLIDTLLSDE---EGAFLDAVRHLILPAIVLGTIPLAVIARMTRSAMLEVLREDYVRTA 237
Cdd:PRK15110 139 GWLPVSGRFDLLYEVKPVTGFALIDAWLSDSpwrDEMIMSAIRHMILPVITLAVAPTTEVIRLMRISTIEVYDQNYVKAA 218

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699  238 RAKGLSPARVVFVHALRNALIPVLTVLGLQVGTLLAGAVLTETIFSWPGIGKWLIDAISARDYPVVQNGILLVATLVILV 317
Cdd:PRK15110 219 ATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISAGVMVVGSLVIIV 298

                        330
                 ....*....|...
gi 15599699  318 NFVVDILYGLANP 330
Cdd:PRK15110 299 NVLSDILGAMANP 311
oppB PRK09471
oligopeptide ABC transporter permease OppB;
1-334 4.69e-69

oligopeptide ABC transporter permease OppB;


Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 218.01  E-value: 4.69e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699    1 MLSFIARRLGLLIPTFFGVTLLTFALIRLIPGDPvevMMGERRVDPQMHAEALHRLGLDKPLYQQYLDYVGNLAQGNLGK 80
Cdd:PRK09471   1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSP---FTGERTLPPEVMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGP 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699   81 SIRTHEPVWNEFL-TLFSATLELSFAAMLFAGTLGLLAGVVAALKRGSIFDHGVMTISLAGYSMPIFWWGLLLIMLFSVS 159
Cdd:PRK09471  78 SFKYKDYSVNDLVaSSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFAIT 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699  160 LGWTPVsdrigvlyevepktgfmlidtllsdeeGAFLD-AVRHLILPAIVLGTIPLAVIARMTRSAMLEVLREDYVRTAR 238
Cdd:PRK09471 158 LHWLPG---------------------------GGWNGgALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTAR 210

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699  239 AKGLSPARVVFVHALRNALIPVLTVLGLQVGTLLAGAVLTETIFSWPGIGKWLIDAISARDYPVVQNGILLVATLVILVN 318
Cdd:PRK09471 211 AKGLPMRRIILRHALKPALLPVLSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFN 290

                        330
                 ....*....|....*.
gi 15599699  319 FVVDILYGLANPRIRH 334
Cdd:PRK09471 291 AIVDVLYAVIDPKIRY 306
YejB COG4174
ABC-type microcin C transport system, permease component YejB [Secondary metabolites ...
 1-332 1.07e-47

ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443333 [Multi-domain]  Cd Length: 363  Bit Score: 164.20  E-value: 1.07e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699   1 MLSFIARRLGLLIPTFFGVTLLTFALIRLIPGDPVEVMM----------------------------------GERRVDP 46
Cdd:COG4174   1 MGAYILRRLLLMIPTLLGIMLINFVIVQFAPGGPVEQVIaqlqgtgggatgrisggggdagggaaagggskyrGARGLDP 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699  47 QMHAEALHRLGLDKPLYQQYLDYVGNLAQGNLGKSIRTHEPVWNEFLTLFSATLELSFAAMLFAGTLGLLAGVVAALKRG 126
Cdd:COG4174  81 EFIAELEKQYGFDKPAHERFLLMLKNYLRFDFGESYFRDISVIDLILEKLPVSISLGLWSTLLTYLISIPLGIRKAVRDG 160

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699 127 SIFDHGVMTISLAGYSMPIFWWGLLLIMLFSvslGwtpvsdriGVLYEVEPKTGfmlidtLLSD--EE----GAFLDAVR 200
Cdd:COG4174 161 SRFDVWTSTVIIVGYAIPGFLFAILLIVLFA---G--------GSYFDWFPLRG------LTSDnwDQlswwGKILDYLW 223

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699 201 HLILP--AIVLGTipLAVIARMTRSAMLEVLREDYVRTARAKGLSPARVVFVHALRNALIPVLTVL-GLQVGTLLAGAVL 277
Cdd:COG4174 224 HLTLPvtAMVIGG--FATLTLLTKNSFLDEIRKQYVLTARAKGLSERRVLYGHVFRNAMLIVIAGFpAAFIGAFFTGSLL 301

                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 15599699 278 TETIFSWPGIGKWLIDAISARDYPVVQnGILLVATLV-ILVNFVVDILYGLANPRI 332
Cdd:COG4174 302 IETIFSLDGLGLLGFEAVVNRDYPVVF-GTLYIFTLIgLVLKLISDLTYVLVDPRI 356
PRK15133 PRK15133
microcin C ABC transporter permease YejB; Provisional
 1-332 6.26e-35

microcin C ABC transporter permease YejB; Provisional


Pssm-ID: 185087 [Multi-domain]  Cd Length: 364  Bit Score: 130.64  E-value: 6.26e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699    1 MLSFIARRLGLLIPTFFGVTLLTFALIRLIPGDPVEVMM-------------------------------------GERR 43
Cdd:PRK15133   1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIaaiefgqagglpgaggegvrashaqtgvgnisdsnyrGGRG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699   44 VDPQMHAEALHRLGLDKPLYQQYLDYVGNLAQGNLGKSIRTHEPVwnefLTLFSATLELSFAAMLFAGTLGLLA----GV 119
Cdd:PRK15133  81 LDPEVIAEITHRYGFDKPLHERYFKMLWDYIRFDFGDSLFRSASV----LTLIKDSLPVSITLGLWSTLIIYLVsiplGI 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699  120 VAALKRGSIFDHGVMTISLAGYSMPIFWWGLLLIMLFSVS--LGWTPVSDRIGVLYEVEPKTGfmlidtllsdeegAFLD 197
Cdd:PRK15133 157 RKAVRNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGsyFDLFPLRGLVSANFDSLPWYQ-------------KITD 223

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699  198 AVRHLILP--AIVLGTipLAVIARMTRSAMLEVLREDYVRTARAKGLSPARVVFVHALRNALIpvLTVLGLQ---VGTLL 272
Cdd:PRK15133 224 YLWHITLPvlATVIGG--FAALTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAML--LVIAGFPatfISMFF 299

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15599699  273 AGAVLTETIFSWPGIGKWLIDAISARDYPVVqNGILLVATLV-ILVNFVVDILYGLANPRI 332
Cdd:PRK15133 300 TGSLLIEVMFSLNGLGLLGYEATVSRDYPVM-FGTLYIFTLIgLLLNIVSDISYTLVDPRI 359
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 114-334 9.39e-30

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 112.01  E-value: 9.39e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699   114 GLLAGVVAALKRGSIFDHGVMTISLAGYSMPIFWWGLLLIMLFsvslgwtpvsdrigvlyevepktgfmlidtllsdeeg 193
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA------------------------------------- 43

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699   194 aFLDAVRHLILPAIVLGTIPLAVIARMTRSAMLEVLREDYVRTARAKGLSPARVVFVHALRNALIPVLTVLGLQVGTLLA 273
Cdd:pfam00528  44 -ILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALG 122

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15599699   274 GAVLTETIFSWPGIGKWLIDAISARDYPVVQNGILLVATLVILVNFVVDILYGLANPRIRH 334
Cdd:pfam00528 123 GAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 99-316 1.72e-20

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 87.33  E-value: 1.72e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699  99 TLELSFAAMLFAGTLGLLAGVVAALKRGSIfDHGVMTISLAGYSMPIFWWGLLLIMLFSVSLGWtpvsdrigvlyevepk 178
Cdd:cd06261   4 TLLLALIATLLALVLGLLLGIILARKRGKL-DRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW---------------- 66

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699 179 tgfmlidtllsdeegaflDAVRHLILPAIVLGTIPLAVIARMTRSAMLEVLREDYVRTARAKGLSPARVVFVHALRNALI 258
Cdd:cd06261  67 ------------------GILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALP 128

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15599699 259 PVLTVLGLQVGTLLAGAVLTETIFS----WPGIGKWLIDAISARDYPVVQNGILLVATLVIL 316
Cdd:cd06261 129 PILTGLVLAFARALGEFALVSFLGGgeapGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
BPD_transp_1_N pfam19300
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal ...
 1-103 1.44e-13

Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal transmembrane domain of the Binding-protein-dependent transport system inner membrane component.


Pssm-ID: 437132 [Multi-domain]  Cd Length: 114  Bit Score: 66.09  E-value: 1.44e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699     1 MLSFIARRLGLLIPTFFGVTLLTFALIRLIPGDPVEVMMGeRRVDPQMHAEALHRLGLDKPLYQQYLDYVGNL------- 73
Cdd:pfam19300   1 MLRFLVRRTLGAVVILLIISAVTFFLFYAIPRDPARLACG-KNCTPETLALIRHNLGLDKPIPVQYWHFLSGIfagrdfg 79

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 15599699    74 AQGN-----LGKSIRTHEPVWNEFLTLFSATLELS 103
Cdd:pfam19300  80 AVGHcpapcLGYSFANNEPVWDTIMDRFPTTLSLA 114
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 99-288 7.20e-13

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 67.83  E-value: 7.20e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699  99 TLELSFAAMLFAGTLGLLAGVVAALKRGsIFDHGVMTISLAGYSMPifwwGLLLIMLFSVSLGwtpvsdrigvlyevepk 178
Cdd:COG1173  81 SLLVGLLAVLIALVIGVLLGLLAGYFGG-WVDAVLMRLVDVLLAFP----SLLLAIALVAVLG----------------- 138

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15599699 179 TGFMLIdtllsdeegafldavrhlilpAIVLGTIPLAVIARMTRSAMLEVLREDYVRTARAKGLSPARVVFVHALRNALI 258
Cdd:COG1173 139 PGLLNV---------------------ILALGLTGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLP 197

                       170       180       190
                ....*....|....*....|....*....|
gi 15599699 259 PVLTVLGLQVGTllagAVLTETIFSWPGIG 288
Cdd:COG1173 198 PLIVQATLGIAS----AILAEAGLSFLGLG 223
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH