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Conserved domains on  [gi|15598449|ref|NP_251943|]
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ABC transporter permease [Pseudomonas aeruginosa PAO1]

Protein Classification

ABC transporter permease( domain architecture ID 11439530)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0140359|GO:0042626|GO:0016020
PubMed:  18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 6-265 6.20e-62

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


:

Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 195.72  E-value: 6.20e-62
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449   6 RRPAALYHRLVVCALFLILVLPLAATLLYSLATQWSATLLPDGLTLKWYLTLWSDQRFLLAFARSLLVCFGALAFSVLLI 85
Cdd:COG1177   2 SRLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLG 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449  86 LPLMFVIHYHFPRLDGVMNVLILLPFAVPPIVSSVGLLQLYASgpLEMIGTPWVLVGCYFTIALPFMYRAITNNLQAINl 165
Cdd:COG1177  82 TPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSA--LGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFD- 158

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449 166 RDLMDAAHLLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIGEFVFANLLVGTRYETLQVFL-NNMRNSSGHYTSAVVV 244
Cdd:COG1177 159 PSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIySMIRRGISPEINALST 238

                       250       260
                ....*....|....*....|.
gi 15598449 245 SYFVFVLVLTWAANRLNKDKA 265
Cdd:COG1177 239 LLILLSLLLLLLAERLRRRGE 259
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 6-265 6.20e-62

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 195.72  E-value: 6.20e-62
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449   6 RRPAALYHRLVVCALFLILVLPLAATLLYSLATQWSATLLPDGLTLKWYLTLWSDQRFLLAFARSLLVCFGALAFSVLLI 85
Cdd:COG1177   2 SRLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLG 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449  86 LPLMFVIHYHFPRLDGVMNVLILLPFAVPPIVSSVGLLQLYASgpLEMIGTPWVLVGCYFTIALPFMYRAITNNLQAINl 165
Cdd:COG1177  82 TPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSA--LGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFD- 158

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449 166 RDLMDAAHLLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIGEFVFANLLVGTRYETLQVFL-NNMRNSSGHYTSAVVV 244
Cdd:COG1177 159 PSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIySMIRRGISPEINALST 238

                       250       260
                ....*....|....*....|.
gi 15598449 245 SYFVFVLVLTWAANRLNKDKA 265
Cdd:COG1177 239 LLILLSLLLLLLAERLRRRGE 259
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 67-255 2.14e-11

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 61.14  E-value: 2.14e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449  67 FARSLLVCFGALAFSVLLILPLMFVIHYHFPRLDGVMNVLILLPFAVPPIVSSVGLLQLYASGPLEMIGTPWVLVG--CY 144
Cdd:cd06261   1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPAliLA 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449 145 FTIALPFMYRAITNNLQAINlRDLMDAAHLLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIGEFVFANLLVGTRYETL 224
Cdd:cd06261  81 LLLIAPFARLIRRAALESIP-KDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP 159

                       170       180       190
                ....*....|....*....|....*....|.
gi 15598449 225 QVFLNNMRNSSGHYTSAVVVSYFVFVLVLTW 255
Cdd:cd06261 160 GTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
permease_CysW TIGR02140
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ...
 20-253 2.58e-09

sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 162725  Cd Length: 261  Bit Score: 56.24  E-value: 2.58e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449    20 LFLILVLPLAATLLYSLATQWSAtllpdgltlkwYLTLWSDQRFLLAFARSLLVCFGALAFSVLLILPLMFVIHYHFPRL 99
Cdd:TIGR02140  13 LFLLLLLPLALIFQEAFEKGFGV-----------FFAAISDPDALSAIKLTLLVALIVVPLNTVFGVCAAWVLTRFQFPG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449   100 DGVMNVLILLPFAVPPIVSSVGLLQLYAS----GPLE-------MIGTPWVLVGCYFtIALPFMYRAITNNLQAINlRDL 168
Cdd:TIGR02140  82 KRLLLTIIDLPFSVSPVVAGLIFVLLYGSqgwlGPWLedldikiIFSLPGIVLATMF-VTCPFVARELIPVMEEQG-TEQ 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449   169 MDAAHLLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIGEF-----VFANLLVGTRYETLQV-FLNNMRNSSGHYTSAV 242
Cdd:TIGR02140 160 EEAALTLGASWWQTFWRVTLPNIKWGLLYGVILCNARAMGEFgavsvVSGHIRGKTNTLPLHVeLLYNEYQSYAAFAAAS 239

                         250
                  ....*....|..
gi 15598449   243 VVSYF-VFVLVL 253
Cdd:TIGR02140 240 LLALLaLVTLVL 251
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 14-224 2.92e-09

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 56.15  E-value: 2.92e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449   14 RLVVCALFLILVLPLAATLLYSL-----ATQWSatllpdGLTLKWYLTLWSDQRFLLAFARSLLV-CFGALAFSVLLILP 87
Cdd:PRK09500   7 GGFMTLVYAYLYIPIIILIVNSFnssrfGINWK------GFTTKWYELLFNNDSLLQAAQHSLTMaVFSATFATLIGSLT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449   88 LMFVIHYHFpRLDGVMNVLILLPFAVPPIVSSVGLLQLYAsgpleMIGTP---WVLVGCYFTIALPFMYRAITNNLQAIN 164
Cdd:PRK09500  81 AVALYRYRF-RGKKFVSGMLFVVMMSPDIVMAISLLVLFM-----LLGIQlgfWSLLFAHITFCLPFVVVTVYSRLKGFD 154

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449  165 LRdLMDAAHLLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIGEFVFANLLVGTRYETL 224
Cdd:PRK09500 155 VR-MLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEIL 213
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 94-262 1.04e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 47.68  E-value: 1.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449    94 YHFPRLDGVMNVLILLPFAVPPIVssVGLLQLYASGPLEMIGTPWVLVGCYFTIALPFMYRAITNNLQAINlRDLMDAAH 173
Cdd:pfam00528  11 RRGRRLDRLLRPLIDLLQALPSFV--LAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLP-SDLVEAAR 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449   174 LLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIGEFVFANLL---VGTRYETLQVFLNNMRNSSGHYTSAVVVSYFVFV 250
Cdd:pfam00528  88 ALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLN 167

                         170
                  ....*....|..
gi 15598449   251 LVLTWAANRLNK 262
Cdd:pfam00528 168 LLVDILQRLLDP 179
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 6-265 6.20e-62

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 195.72  E-value: 6.20e-62
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449   6 RRPAALYHRLVVCALFLILVLPLAATLLYSLATQWSATLLPDGLTLKWYLTLWSDQRFLLAFARSLLVCFGALAFSVLLI 85
Cdd:COG1177   2 SRLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLG 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449  86 LPLMFVIHYHFPRLDGVMNVLILLPFAVPPIVSSVGLLQLYASgpLEMIGTPWVLVGCYFTIALPFMYRAITNNLQAINl 165
Cdd:COG1177  82 TPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSA--LGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFD- 158

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449 166 RDLMDAAHLLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIGEFVFANLLVGTRYETLQVFL-NNMRNSSGHYTSAVVV 244
Cdd:COG1177 159 PSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIySMIRRGISPEINALST 238

                       250       260
                ....*....|....*....|.
gi 15598449 245 SYFVFVLVLTWAANRLNKDKA 265
Cdd:COG1177 239 LLILLSLLLLLLAERLRRRGE 259
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
15-264 3.81e-28

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 112.18  E-value: 3.81e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449  15 LVVCALFLILVLPLAATLLYSLATqwsatLLPDGLTLKWYLTLWSDQRFLLAFARSLLVCFGALAFSVLLILPLMFVIHY 94
Cdd:COG1178 293 LCLLLVLLGLLLPLLALLLWSLTK-----ALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRR 367

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449  95 HFPRLDGVMNVLILLPFAVPPIVSSVGLLQLYAS-GPLEMIGTPWVLVGCYFTIALPFMYRAITNNLQAINlRDLMDAAH 173
Cdd:COG1178 368 RRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRpLPLLLYGTLAILVLAYVVRFLPFALRSLEAALAQID-PSLEEAAR 446

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449 174 LLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIGEFVFANLLVGTRYETLQVFLNNMrNSSGHYTSAVVVS--YFVFVL 251
Cdd:COG1178 447 SLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIYQL-ASSGRYGEAAALAllLVLVSL 525

                       250
                ....*....|...
gi 15598449 252 VLTWAANRLNKDK 264
Cdd:COG1178 526 LPVLLLERLLGRR 538
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 1-262 6.94e-28

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 107.93  E-value: 6.94e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449   1 MSRADRRPAALYHRLVVCALFLIL--VLPLAATLLYSLATQWSATLLPDGLTLKWYLTLWSDQRFLLAFARSLLVCFGAL 78
Cdd:COG1176   1 MSAALRRRLRPLLLLLPALLWLLLffVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTT 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449  79 AFSVLLILPLMFVIHYHFPRLDGVMNVLILLPFAVPPIVSSVGLLQLYA---------------SGPLEMIGTPWVLVGC 143
Cdd:COG1176  81 LICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGrngllnslllalgliDEPLRLLYTEFAVVIG 160

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449 144 YFTIALPFMYRAITNNLQAINlRDLMDAAHLLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIGEFVFANLLVGTRYET 223
Cdd:COG1176 161 LVYVYLPFMVLPLYAALEKID-PSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLM 239

                       250       260       270       280
                ....*....|....*....|....*....|....*....|.
gi 15598449 224 LQVFLNNMRNSSGHYT--SAVVVSYFVFVLVLTWAANRLNK 262
Cdd:COG1176 240 IGNLIYQQFLSALNWPlaAALAVVLLLIVLLVLLLYLRLLR 280
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 1-210 2.61e-21

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 89.81  E-value: 2.61e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449   1 MSRADRRPAALYHRLVVCALFLILVLPLAATLLYSLATQWSAtllpdgltlkwYLTLWSDQRFLLAFARSLLVCFGALAF 80
Cdd:COG0555   1 MSRRVLPGFGLTLGLTLLYLSLIVLLPLAALVLKAAGLGWAE-----------FWAVLTSPRVLAALKLSLGTALIAALI 69

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449  81 SVLLILPLMFVIH-YHFPrLDGVMNVLILLPFAVPPIVSSVGLLQLYAS-----GPLEMIG-----TPWVLVGCYFTIAL 149
Cdd:COG0555  70 NLVFGLPLAWVLVrYRFP-GKRLVDALVDLPFALPTAVAGIALLLLFGPngwlgQLLAPLGikvafTPLGIVLAQTFVSL 148

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15598449 150 PFMYRAITNNLQAINlRDLMDAAHLLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIGEF 210
Cdd:COG0555 149 PFVVRTVQPVLEELD-PELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEF 208
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 1-259 1.55e-18

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 82.84  E-value: 1.55e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449   1 MSRADRRPAALYHR----LVVCALFLILVLPLAATLLYSLATQ-----WSATLLPDGLTLKWYLTLWSDQRFLLAFARSL 71
Cdd:COG0395   1 MSATARRRRRRLGRillyLLLILLALLFLFPLYWMVVTSFKPPaeifsGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449  72 LVCFGALAFSVLLILPLMFVIHYHFPRLDGVMNVLILLPFAVPPIVSSVGLLQLYASgpLEMIGTPWVLVGCYFTIALPF 151
Cdd:COG0395  81 IVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQ--LGLLNTYWGLILPYLAFGLPF 158

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449 152 ---MYRaitNNLQAINlRDLMDAAHLLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIGEFVFANLLVGTR-YETLQVF 227
Cdd:COG0395 159 gifLLR---QFFRSIP-RELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPdLRTLPVG 234

                       250       260       270
                ....*....|....*....|....*....|....*
gi 15598449 228 LNNMRNSSG---HYTSAVVVSYFVFVLVLTWAANR 259
Cdd:COG0395 235 LASFQGQYGtdwGLLMAAAVIATLPVLILFLFLQR 269
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
1-265 1.62e-18

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 84.44  E-value: 1.62e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449   1 MSRADRRPAALYHRLVVCALFLILVLPLAATLLYSLATQWSatllpdgltlkWYLTLWSDQRFLLAFARSLLVCFGALAF 80
Cdd:COG1178   1 MSTRPRRRPRLLLLLLALLLALLVLLPLLALLLRAFTDGLA-----------NFWALLSDPYLWRALGNTLLLALLVTLL 69

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449  81 SVLLILPLMFVIHYHFPRLDGVMNVLILLPFAVPPIVSSVGLLQLYA-SGPLEMIGTPWV---------LVGCYFTIAL- 149
Cdd:COG1178  70 SLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGpNGLLNTLLRALFgleppdiygLGGIILVLVLf 149

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449 150 --PFMYRAITNNLQAINlRDLMDAAHLLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIGEFVfANLLVGTRYETLQVF 227
Cdd:COG1178 150 nyPYVYLLLRAALRSID-ASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFG-TPLVLGGGYTTLTTA 227

                       250       260       270       280
                ....*....|....*....|....*....|....*....|
gi 15598449 228 LNNMRNSSGHYTSAVVVSY--FVFVLVLTWAANRLNKDKA 265
Cdd:COG1178 228 IYQAWLGDFDLGAAAALALvlLLLVLLLLLLERRLRRRRR 267
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 63-210 5.18e-15

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 72.00  E-value: 5.18e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449  63 FLLAFARSLLVCFGALAFSVLLILPLMFVIHYHFPRLDGVMNVLILLPFAVPPIVssVGLLQLYASGPLEMIGTPW---- 138
Cdd:COG4149   5 DWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTV--LGFYLLLLFGRNGPLGQLLeelf 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449 139 ----------VLVGCYFtIALPFMYRAITNNLQAINlRDLMDAAHLLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIG 208
Cdd:COG4149  83 gislvftwtgAVLASVV-VSLPLMVQPLRAAFEAVD-PRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALG 160


                ..
gi 15598449 209 EF 210
Cdd:COG4149 161 EF 162
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
20-264 2.54e-13

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 68.24  E-value: 2.54e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449  20 LFLILVLPLAATLLYSLaTQWSATLLPDGLT-LKWYLTLWSDQRFLLAFARSLLVCFGALAFSVLLILPLMFVIHYHFpR 98
Cdd:COG1175  31 LLVFVLYPLLYTLYLSF-TDWNLLGPPPEFVgLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNRKL-R 108

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449  99 LDGVMNVLILLPFAVPPIVSSVGLLQLYASGP------LEMIGTP------------WVLVGCYFTIALPFMYRAITNNL 160
Cdd:COG1175 109 GRGFFRTLFFLPWVISPVVVALIWKWLFNPDYgllnalLGALGLEpinwlgdpslalPAVIIVTVWKGTGFNMLIFLAGL 188

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449 161 QAINlRDLMDAAHLLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIGEFVFANLLVG----TRYETLQVFLNNMRNSSG 236
Cdd:COG1175 189 QSIP-RELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGggpgNSTTTLVLYIYQTAFQQF 267

                       250       260       270
                ....*....|....*....|....*....|
gi 15598449 237 H--YTSAVVVSYFVFVLVLTWAANRLNKDK 264
Cdd:COG1175 268 DfgYASAIAVVLFLIILVLTLLQLRLLRRR 297
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 67-255 2.14e-11

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 61.14  E-value: 2.14e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449  67 FARSLLVCFGALAFSVLLILPLMFVIHYHFPRLDGVMNVLILLPFAVPPIVSSVGLLQLYASGPLEMIGTPWVLVG--CY 144
Cdd:cd06261   1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPAliLA 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449 145 FTIALPFMYRAITNNLQAINlRDLMDAAHLLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIGEFVFANLLVGTRYETL 224
Cdd:cd06261  81 LLLIAPFARLIRRAALESIP-KDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP 159

                       170       180       190
                ....*....|....*....|....*....|.
gi 15598449 225 QVFLNNMRNSSGHYTSAVVVSYFVFVLVLTW 255
Cdd:cd06261 160 GTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
permease_CysW TIGR02140
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ...
 20-253 2.58e-09

sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 162725  Cd Length: 261  Bit Score: 56.24  E-value: 2.58e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449    20 LFLILVLPLAATLLYSLATQWSAtllpdgltlkwYLTLWSDQRFLLAFARSLLVCFGALAFSVLLILPLMFVIHYHFPRL 99
Cdd:TIGR02140  13 LFLLLLLPLALIFQEAFEKGFGV-----------FFAAISDPDALSAIKLTLLVALIVVPLNTVFGVCAAWVLTRFQFPG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449   100 DGVMNVLILLPFAVPPIVSSVGLLQLYAS----GPLE-------MIGTPWVLVGCYFtIALPFMYRAITNNLQAINlRDL 168
Cdd:TIGR02140  82 KRLLLTIIDLPFSVSPVVAGLIFVLLYGSqgwlGPWLedldikiIFSLPGIVLATMF-VTCPFVARELIPVMEEQG-TEQ 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449   169 MDAAHLLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIGEF-----VFANLLVGTRYETLQV-FLNNMRNSSGHYTSAV 242
Cdd:TIGR02140 160 EEAALTLGASWWQTFWRVTLPNIKWGLLYGVILCNARAMGEFgavsvVSGHIRGKTNTLPLHVeLLYNEYQSYAAFAAAS 239

                         250
                  ....*....|..
gi 15598449   243 VVSYF-VFVLVL 253
Cdd:TIGR02140 240 LLALLaLVTLVL 251
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 14-224 2.92e-09

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 56.15  E-value: 2.92e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449   14 RLVVCALFLILVLPLAATLLYSL-----ATQWSatllpdGLTLKWYLTLWSDQRFLLAFARSLLV-CFGALAFSVLLILP 87
Cdd:PRK09500   7 GGFMTLVYAYLYIPIIILIVNSFnssrfGINWK------GFTTKWYELLFNNDSLLQAAQHSLTMaVFSATFATLIGSLT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449   88 LMFVIHYHFpRLDGVMNVLILLPFAVPPIVSSVGLLQLYAsgpleMIGTP---WVLVGCYFTIALPFMYRAITNNLQAIN 164
Cdd:PRK09500  81 AVALYRYRF-RGKKFVSGMLFVVMMSPDIVMAISLLVLFM-----LLGIQlgfWSLLFAHITFCLPFVVVTVYSRLKGFD 154

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449  165 LRdLMDAAHLLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIGEFVFANLLVGTRYETL 224
Cdd:PRK09500 155 VR-MLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEIL 213
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 5-210 6.98e-09

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 56.00  E-value: 6.98e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449    5 DRRPAALYHRLVVCALFLILVLPLAATllyslatqwsatlLPDGLTLKWyLTLWSDQRFLLAFARSLLVCFGALAFSVLL 84
Cdd:PRK09433 273 DSLWSRLWDGLLIVLALLLLLPPLLAV-------------VVSGLNASL-LRVLAQPALWQALWTSLRIALAAALLAVVL 338

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449   85 ILPLMF----VIHYHFPRLDGVMNVLILLPFAVPPIVSSVGL-LQLYASGPLEMIGtPWVLVGCYFTIALPFMYRAITNN 159
Cdd:PRK09433 339 TMMLLWssreLRLRQRKLAAQALELSGMLILAMPGIVLATGLfLLLRNTTDLPASA-LGIVILTNALMALPYALRVLEPP 417

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 15598449  160 LQAINLRDLMDAAHlLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIGEF 210
Cdd:PRK09433 418 MRDIAARYGRLCQS-LGIRGWSRLRLIELRALRRPLAQAFAFACALSLGDF 467
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 1-224 1.80e-07

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 51.80  E-value: 1.80e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449   1 MSRADRRPAALYHRLVVCALFLILVLP---LAATLLYSLATQWS-ATLLPDGLTLKWYLTLWSDqrFLLAFARSLLVCFG 76
Cdd:COG4135 290 SSGRRGLGDPALRRLGLALMLLIALLSllgLALLLLWSFAGRWRfPDALPSSWTLRFWQRAAPG--LLEPLGNTLLLALA 367

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449  77 ALAFSVLLILPLMFVIHYHFPRLDGVMNVLILLPFAVPPIVSSVGLLQLYASGPLEmiGTPWVLVGCYFTIALPFMYRAI 156
Cdd:COG4135 368 SALIALVLVLACLEAEARRGRRPGRRALWLLYLPLLVPQIAFLFGLQVLLLRLGLD--GTWLAVIWAHLVFVLPYVFLSL 445

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15598449 157 TNNLQAINLRdLMDAAHLLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIGEFVFANLLVGTRYETL 224
Cdd:COG4135 446 AGPWRALDPR-YAQVAASLGASPWRVFWRVKLPLLLRPILTAAAVGFAVSVAQYLPTLLIGAGRVATL 512
modB PRK09421
molybdate ABC transporter permease subunit;
66-210 8.87e-07

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 48.38  E-value: 8.87e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449   66 AFARSLLVCFGALAFSvlliLPLMFVIHYHFPRLD----GVMNVLILLPFAVPPIVssVGLLQLYASGPLEMIGTP-WVL 140
Cdd:PRK09421  10 AVLLSLKVSSVAVLFS----LPFGILVAWLLARCRfpgkSLLDSLLHLPLVLPPVV--TGYLLLISMGRRGFIGQWlYEW 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449  141 VGCYFT------------IALPFMYRAITNNLQAINLRdLMDAAHLLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIG 208
Cdd:PRK09421  84 FGISFAfswrgaalaaavMAFPLMVRAIRLSLEAVDRK-LEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLG 162


                 ..
gi 15598449  209 EF 210
Cdd:PRK09421 163 EF 164
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 94-262 1.04e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 47.68  E-value: 1.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449    94 YHFPRLDGVMNVLILLPFAVPPIVssVGLLQLYASGPLEMIGTPWVLVGCYFTIALPFMYRAITNNLQAINlRDLMDAAH 173
Cdd:pfam00528  11 RRGRRLDRLLRPLIDLLQALPSFV--LAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLP-SDLVEAAR 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449   174 LLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIGEFVFANLL---VGTRYETLQVFLNNMRNSSGHYTSAVVVSYFVFV 250
Cdd:pfam00528  88 ALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLN 167

                         170
                  ....*....|..
gi 15598449   251 LVLTWAANRLNK 262
Cdd:pfam00528 168 LLVDILQRLLDP 179
cysT CHL00187
sulfate transport protein; Provisional
 20-210 1.38e-06

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 48.09  E-value: 1.38e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449   20 LFLILVLPLAATLLYSLATQWSatllpDGLTLKW-YLTLWSdqrFLLAFARSLLVC-----FGALAFSVLlilplmfvIH 93
Cdd:CHL00187  21 IIFLLVLPILALLIKASQQPWS-----DFLQKATePIALSA---YSLTLSMALIAAlingfFGLLIAWVL--------VR 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449   94 YHFP--RLdgvMNVLILLPFAVPPIVSSVGLLQLYA-SGPL---------EMIGTPWVLVGCYFTIALPFMYRAITNNLQ 161
Cdd:CHL00187  85 YNFPgkRL---LDAAVDLPFALPTSVAGLTLATVYGdNGWIghllshlgiQIVFTKLGVLLAMIFVSFPFVVRTIQPVLQ 161

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 15598449  162 AINlRDLMDAAHLLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIGEF 210
Cdd:CHL00187 162 EIE-KELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEY 209
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
22-210 6.17e-06

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 46.29  E-value: 6.17e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449   22 LILVLPLAAtllysLATQWSAtllpdgLTLKWYLTLWSDQRFLLAFARSLLVCFGALAFSVLLILPLMFVI-HYHFP--- 97
Cdd:PRK10971  26 LILLLPLSA-----LVMQLSQ------MSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILtRYRFPgrt 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449   98 RLDGVMNvlilLPFAVPPIVSSVGLLQLYAS--------GPLEM-IGTPW--VLVGCYFTiALPFMYRAITNNLQAINlR 166
Cdd:PRK10971  95 LLDALMD----LPFALPTAVAGLTLASLFSVngwygewlAKFDIkVTYTWlgIAVAMAFT-SIPFVVRTVQPVLEELG-P 168

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 15598449  167 DLMDAAHLLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIGEF 210
Cdd:PRK10971 169 EYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEF 212
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 15-210 6.80e-05

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 43.90  E-value: 6.80e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449    15 LVVCALFLILVLPLAATLLYSLATQwsatllpDG--LTLKWYLTLWSDQRFLLAFARSLLVCfgalAFSVLLILPLMFVI 92
Cdd:TIGR03262   9 GMILALLLFLLLPLLALLTKSVYDS-------DGdfIGLANFAEYFATPGLLQSLGNSLTVS----AIVTAIVVPLAFAF 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449    93 HYHFPR----LDGVMNVLILLPFAVPPIVSSVGLLQLYASGPL--EMIGT-----PW--VLVGCYFTiaLPFMYRAITNN 159
Cdd:TIGR03262  78 AYALTRsripGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLlkGLLGGfsiygFWgiVIGEVFYT--FPHALMILVTA 155

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15598449   160 LQAINLRdLMDAAHLLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIGEF 210
Cdd:TIGR03262 156 LSLADGR-LYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDF 205
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
106-241 1.23e-03

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 39.35  E-value: 1.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449  106 LILLPFAVPPIVSSVGLLQLYAS-GPLE----------MIGTP-WVLVGCYFTIalPFMYRAITNNLQAINLRDlMDAAH 173
Cdd:PRK11602 105 LLDIPFAVSPVVAGLVYLLFYGSnGPLGgwldehnlqlMFSWPgMVLVTIFVTC--PFVVRELVPVMLSQGSQE-DEAAI 181

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15598449  174 LLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIGEFVFANLLVGT-RYET----LQV-FLNNMRNSSGHYTSA 241
Cdd:PRK11602 182 LLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSiRGETlslpLQIeLLEQDYNTVGSFTAA 255
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 21-214 1.75e-03

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 38.98  E-value: 1.75e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449  21 FLILVLPLAATLLYSLATQWSATLLPD-GLTLKWYLTLWSDQRFLLAFARSLLVCFGALAFSVLLILPLMFVIHYhFPRL 99
Cdd:COG0600  16 LLSLALLLALWELAARLGLVPPFLLPSpSAVLAALVELLASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGL-SRLL 94

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449 100 DGVMNVLILLPFAVPPIvssvgllqlyASGPLEMI---GTPWVLVGCYFTIALPFMYRAITNNLQAINlRDLMDAAHLLG 176
Cdd:COG0600  95 RRLLDPLLVFLRPIPPL----------ALAPLLILwfgIGEASKIFVIFLGAFFPILLNTAAGVRSVD-PELLELARSLG 163

                       170       180       190       200
                ....*....|....*....|....*....|....*....|...
gi 15598449 177 ASTWKAALLVVLPNLRKGVMVALLLSFSF-----LIGEFVFAN 214
Cdd:COG0600 164 ASRWQILRKVVLPAALPYIFTGLRIALGLawiglVVAELLGAS 206
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 34-218 2.52e-03

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 38.54  E-value: 2.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449   34 YSLATQWSATLLPDGLTLKWYLTLWSDQRFLLAFARSLLVCFGALAFSVLLILPLMFVIHYHFPRLDGVMNVLILLP--- 110
Cdd:PRK10683  66 YTDLMEWADGQLSITLNLGNFLQLTDDPLYFDAYLQSLQVAAISTLCCLLIGYPLAWAVAHSKPSTRNILLLLVILPswt 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449  111 ------FAVPPIVSSVGLLQ--LYASG----PLEMIGTPW-VLVGCYFTIaLPFMYRAITNNLQAINLrDLMDAAHLLGA 177
Cdd:PRK10683 146 sflirvYAWMGILKNNGVLNnfLLWLGvidqPLTILHTNLaVYIGIVYAY-LPFMVLPIYTALTRIDY-SLVEAALDLGA 223

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 15598449  178 STWKAALLVVLPNLRKGVMVALLLSFSFLIGEFVFANLLVG 218
Cdd:PRK10683 224 RPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGG 264
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 70-207 3.00e-03

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 38.17  E-value: 3.00e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449  70 SLLVCFGALAFSVLLILPLMFVIHYHFPRLDGVMNVLILLPFAVPPIVSSVGLLQLYASGPLEMIgtpwvlvgcyFTIAL 149
Cdd:COG1173  81 SLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVI----------LALGL 150

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15598449 150 ---PFMYRAITNNLQAINLRDLMDAAHLLGASTWKAALLVVLPNLRKGVMVALLLSFSFLI 207
Cdd:COG1173 151 tgwPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAI 211
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 3-210 3.55e-03

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 38.06  E-value: 3.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449    3 RADRRPAALYHRLVVCALFLILVLPLAATLLYSLATqwsatllPDGLTLKWYLTLWSDQRFLLAFARSLLVCF----GAL 78
Cdd:PRK15050  18 RRRRLRPLLWLLLPLLVLAPLVVYPLVRVVLQSLTG-------EHGLGLATYRAVLGSPDFRGALLTTLQIAFastaGCL 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598449   79 AFSVLLILPLMFVihyHFPRLDGVMNVL--------ILLPFAVPPIVSSVGLLQL-------YASGPLEMIGTPWVLVGC 143
Cdd:PRK15050  91 VLGVLLALVLAFV---PFPGASLVGRFIdtfvafpsFLITLAFTFLYGSAGSVNIalqrlfgLEAPPLDFLYSPGGVILA 167

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15598449  144 YFTIALPFMYRAITNNLQAINLRdLMDAAHLLGASTWKAALLVVLPNLRKGVMVALLLSFSFLIGEF 210
Cdd:PRK15050 168 EITFYTPFVVRPLLAAFAQLDAR-QLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEF 233
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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