|
Name |
Accession |
Description |
Interval |
E-value |
| BaeS |
COG0642 |
Signal transduction histidine kinase [Signal transduction mechanisms]; |
129-429 |
1.29e-29 |
|
Signal transduction histidine kinase [Signal transduction mechanisms];
Pssm-ID: 440407 [Multi-domain] Cd Length: 328 Bit Score: 117.70 E-value: 1.29e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 129 LADGKTLYLYDNDAAGSIDTPLSDAIIDARVRQTWIVTLSVTLPSLAAVGLLVWFIVAPLRKLTRWSMTLDDLAPDSQRP 208
Cdd:COG0642 3 LLLLLLVLLLLLLLLLLLALLLLLLLLLLLALLLLLALLLLLLLLLLLLLLLALALLALLLLLLLLLLLLLLLLLLLLLL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 209 RFNYRELNVLADTLWNSVTRIKDFSQREERFLRYASHELRTPLAVIGMNLELLDQPGRAPSPHALQRIRRSALGMQQMTE 288
Cdd:COG0642 83 LLLLLLLLLLLLLLLALLLLLEEANEAKSRFLANVSHELRTPLTAIRGYLELLLEELDEEQREYLETILRSADRLLRLIN 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 289 TLLWLSR-ESGELRDD-GHIEVGRLLEELLEEQQALSQRRGLTFHLDVEPHSLP----QTRARIIIGNLLRNALQYSDEG 362
Cdd:COG0642 163 DLLDLSRlEAGKLELEpEPVDLAELLEEVVELFRPLAEEKGIELELDLPDDLPTvrgdPDRLRQVLLNLLSNAIKYTPEG 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 363 ---VVEIVVRDRSLLIS---NPIGAA------------QGTEESMAFGYGLGLDLVQRLCQKSGWRLHYSSDEQR-FRCE 423
Cdd:COG0642 243 gtvTVSVRREGDRVRISvedTGPGIPpedlerifepffRTDPSRRGGGTGLGLAIVKRIVELHGGTIEVESEPGKgTTFT 322
|
....*.
gi 15598274 424 LLFPAT 429
Cdd:COG0642 323 VTLPLA 328
|
|
| PRK10755 |
PRK10755 |
two-component system sensor histidine kinase PmrB; |
150-405 |
3.36e-15 |
|
two-component system sensor histidine kinase PmrB;
Pssm-ID: 236751 [Multi-domain] Cd Length: 356 Bit Score: 76.55 E-value: 3.36e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 150 LSDAIIDARVRQTWIVT------LSVTLPSLAAVG--LLVWF-----IVAPLRKLTR--WSMTLDDLAPDSQRPrfNYRE 214
Cdd:PRK10755 38 LVQATLSARNNDEHVMKeireavASLLVPSLVMVSltLLICFqavrwITRPLAELQKelEARTADNLTPIAIHS--STLE 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 215 LNVLADTLWNSVTRIKDFSQREERFLRYASHELRTPLAVIGMNLELLDQPGRAPSPHALQRIRRsalgMQQMTETLLWLS 294
Cdd:PRK10755 116 IEAVTSALNQLVSRLTSTLDQERLFTADVAHELRTPLAGIRLHLELLEKQHHIDVAPLIARLDQ----MMHTVEQLLQLA 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 295 RESGELRDDGHIEVGRLLEELLEEQQALS---QRRGLTFHLDVEPHSLP----QTRARIIIGNLLRNALQYSDEGV---- 363
Cdd:PRK10755 192 RAGQSFSSGHYQTVKLLEDVILPSQDELSemlEQRQQTLLLPESAADITvqgdATLLRLLLRNLVENAHRYSPEGStiti 271
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 15598274 364 --------VEIVVRDrsllISNPIGAAQGTEESMAF--------GYGLGLDLVQRLCQ 405
Cdd:PRK10755 272 klsqedggAVLAVED----EGPGIDESKCGELSKAFvrmdsrygGIGLGLSIVSRITQ 325
|
|
| phoR_proteo |
TIGR02966 |
phosphate regulon sensor kinase PhoR; Members of this protein family are the regulatory ... |
226-362 |
2.34e-14 |
|
phosphate regulon sensor kinase PhoR; Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems]
Pssm-ID: 274368 [Multi-domain] Cd Length: 333 Bit Score: 73.78 E-value: 2.34e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 226 VTRIKDFSQREERFLRYASHELRTPLAVIGMNLELLDQPGRAPSP---HALQRIRRSALGMQQMTETLLWLSR-ESGELR 301
Cdd:TIGR02966 104 VTRLRRLEQMRRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEewnRALEIMLEQSQRMQSLVEDLLTLSRlESAASP 183
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15598274 302 -DDGHIEVGRLLEELLEEQQALSQRRGLTFHLDVEPhSLP----QTRARIIIGNLLRNALQYSDEG 362
Cdd:TIGR02966 184 lEDEPVDMPALLDHLRDEAEALSQGKNHQITFEIDG-GVDvlgdEDELRSAFSNLVSNAIKYTPEG 248
|
|
| HisKA |
cd00082 |
Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed ... |
233-295 |
1.01e-11 |
|
Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Pssm-ID: 119399 [Multi-domain] Cd Length: 65 Bit Score: 59.92 E-value: 1.01e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15598274 233 SQREERFLRYASHELRTPLAVIGMNLELLDQPGRAPSPH--ALQRIRRSALGMQQMTETLLWLSR 295
Cdd:cd00082 1 LQAKGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQreYLERIREEAERLLRLINDLLDLSR 65
|
|
| HisKA |
pfam00512 |
His Kinase A (phospho-acceptor) domain; dimerization and phospho-acceptor domain of histidine ... |
237-295 |
7.15e-11 |
|
His Kinase A (phospho-acceptor) domain; dimerization and phospho-acceptor domain of histidine kinases.
Pssm-ID: 459839 [Multi-domain] Cd Length: 66 Bit Score: 57.61 E-value: 7.15e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 237 ERFLRYASHELRTPLAVIGMNLELL-DQPGRAPSPHALQRIRRSALGMQQMTETLLWLSR 295
Cdd:pfam00512 3 SEFLANLSHELRTPLTAIRGYLELLrDEKLDEEQREYLETILRSAERLLRLINDLLDLSR 62
|
|
| HisKA |
smart00388 |
His Kinase A (phosphoacceptor) domain; Dimerisation and phosphoacceptor domain of histidine ... |
237-295 |
3.23e-10 |
|
His Kinase A (phosphoacceptor) domain; Dimerisation and phosphoacceptor domain of histidine kinases.
Pssm-ID: 214644 [Multi-domain] Cd Length: 66 Bit Score: 55.65 E-value: 3.23e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 237 ERFLRYASHELRTPLAVIGMNLELLDQPGRAPSPH-ALQRIRRSALGMQQMTETLLWLSR 295
Cdd:smart00388 3 REFLANLSHELRTPLTAIRGYLELLLDTELSEEQReYLETILREAERLLRLINDLLDLSR 62
|
|
| MtrAB_MtrB |
NF040691 |
MtrAB system histidine kinase MtrB; |
159-368 |
2.05e-08 |
|
MtrAB system histidine kinase MtrB;
Pssm-ID: 468655 [Multi-domain] Cd Length: 507 Bit Score: 56.19 E-value: 2.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 159 VRQTWIVTLsvtLPSLAAVGLLVW----FIVAPLRKLTRWSMTL--------------DDLAPDSqrprfnyRELNVLAD 220
Cdd:NF040691 186 VRGTLLLGG---LALVVLLGLIAWlvtrQVVAPVRSAARTAERFaagdlsermpvkgeDDLARLA-------RSFNQMAD 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 221 TLWNSVTRIKDFSQREERFLRYASHELRTPLAVIGMNLELL-DQ-----PGRAPSPHALQR-IRRsalgMQQMTETLLWL 293
Cdd:NF040691 256 SLQRQIRQLEELSRLQQRFVSDVSHELRTPLTTIRMAADVIhDSrddfdPATARSAELLHTeLDR----FESLLSDLLEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 294 SR----------ESGELRDDGHIEVGRLleelleeqQALSQRRGLTFHLDvephsLPQTRARI---------IIGNLLRN 354
Cdd:NF040691 332 SRfdagaaeldvEPVDLRPLVRRVVDAL--------RQLAERAGVELRVD-----APGTPVVAevdprrverVLRNLVVN 398
|
250
....*....|....
gi 15598274 355 ALQYSDEGVVEIVV 368
Cdd:NF040691 399 AIEHGEGKPVVVTV 412
|
|
| BaeS_SmeS |
NF012163 |
sensor histidine kinase efflux regulator BaeS; |
158-362 |
5.48e-07 |
|
sensor histidine kinase efflux regulator BaeS;
Pssm-ID: 411086 [Multi-domain] Cd Length: 457 Bit Score: 51.75 E-value: 5.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 158 RVRQTWIVTLSVTLPSLAAVGLLVWFIVAPLRKL-------------TRWSMT----LDDLAPDsqrprfnyreLNVLAD 220
Cdd:NF012163 162 QKRASWLIVALALLLAALAAFLLARGLLAPVKRLveathrlaagdytTRVTPTsndeLGKLAQD----------FNQLAS 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 221 TLwnsvtriKDFSQREERFLRYASHELRTPLAVIGMNLELLDQPGRAPSPHALQRIRRSALGMQQMTETLLWLSR-ESGE 299
Cdd:NF012163 232 TL-------EKNEQMRRDFMADISHELRTPLAVLRAELEAIQDGIRKFTPESLDSLQAEVGTLTKLVDDLHDLSMsDEGA 304
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 300 LR----DDGHIEVGRLLEELLEEQQAlsqRRGLTFHLDVEPHSL---PQTRARIIIGNLLRNALQYSDEG 362
Cdd:NF012163 305 LAyqkaSVDLVPLLEVEGGAFRERFA---SAGLELEVSLPDSSLvfgDRDRLMQLFNNLLENSLRYTDSG 371
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| BaeS |
COG0642 |
Signal transduction histidine kinase [Signal transduction mechanisms]; |
129-429 |
1.29e-29 |
|
Signal transduction histidine kinase [Signal transduction mechanisms];
Pssm-ID: 440407 [Multi-domain] Cd Length: 328 Bit Score: 117.70 E-value: 1.29e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 129 LADGKTLYLYDNDAAGSIDTPLSDAIIDARVRQTWIVTLSVTLPSLAAVGLLVWFIVAPLRKLTRWSMTLDDLAPDSQRP 208
Cdd:COG0642 3 LLLLLLVLLLLLLLLLLLALLLLLLLLLLLALLLLLALLLLLLLLLLLLLLLALALLALLLLLLLLLLLLLLLLLLLLLL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 209 RFNYRELNVLADTLWNSVTRIKDFSQREERFLRYASHELRTPLAVIGMNLELLDQPGRAPSPHALQRIRRSALGMQQMTE 288
Cdd:COG0642 83 LLLLLLLLLLLLLLLALLLLLEEANEAKSRFLANVSHELRTPLTAIRGYLELLLEELDEEQREYLETILRSADRLLRLIN 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 289 TLLWLSR-ESGELRDD-GHIEVGRLLEELLEEQQALSQRRGLTFHLDVEPHSLP----QTRARIIIGNLLRNALQYSDEG 362
Cdd:COG0642 163 DLLDLSRlEAGKLELEpEPVDLAELLEEVVELFRPLAEEKGIELELDLPDDLPTvrgdPDRLRQVLLNLLSNAIKYTPEG 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 363 ---VVEIVVRDRSLLIS---NPIGAA------------QGTEESMAFGYGLGLDLVQRLCQKSGWRLHYSSDEQR-FRCE 423
Cdd:COG0642 243 gtvTVSVRREGDRVRISvedTGPGIPpedlerifepffRTDPSRRGGGTGLGLAIVKRIVELHGGTIEVESEPGKgTTFT 322
|
....*.
gi 15598274 424 LLFPAT 429
Cdd:COG0642 323 VTLPLA 328
|
|
| KdpD |
COG2205 |
K+-sensing histidine kinase KdpD [Signal transduction mechanisms]; |
228-424 |
5.50e-23 |
|
K+-sensing histidine kinase KdpD [Signal transduction mechanisms];
Pssm-ID: 441807 [Multi-domain] Cd Length: 239 Bit Score: 96.90 E-value: 5.50e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 228 RIKDFSQREERFLRYASHELRTPLAVIGMNLELL-DQPGRAPSPHA--LQRIRRSALGMQQMTETLLWLSR-ESGELRDD 303
Cdd:COG2205 8 ELEELERLKSEFLANVSHELRTPLTSILGAAELLlDEEDLSPEERRelLEIIRESAERLLRLIEDLLDLSRlESGKLSLE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 304 -GHIEVGRLLEELLEEQQALSQRRGLTFHLDVEPHSLP----QTRARIIIGNLLRNALQYSDEGV------------VEI 366
Cdd:COG2205 88 lEPVDLAELLEEAVEELRPLAEEKGIRLELDLPPELPLvyadPELLEQVLANLLDNAIKYSPPGGtitisarregdgVRI 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15598274 367 VVRDRSLLIS--------NPIgaAQGTEESMAFGYGLGLDLVQRLCQKSGWRLHYSSDEQ---RFRCEL 424
Cdd:COG2205 168 SVSDNGPGIPeeelerifERF--YRGDNSRGEGGTGLGLAIVKRIVEAHGGTIWVESEPGggtTFTVTL 234
|
|
| WalK |
COG5002 |
Sensor histidine kinase WalK [Signal transduction mechanisms]; |
99-424 |
1.08e-20 |
|
Sensor histidine kinase WalK [Signal transduction mechanisms];
Pssm-ID: 444026 [Multi-domain] Cd Length: 390 Bit Score: 93.08 E-value: 1.08e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 99 MQLLGNWDDDDEEEDDDAPSDDAYVVVRQPLADGKTLYLYDNDAAGSIDTPLSDAIIDARVRQTWIVTLSVTLPSLAAVG 178
Cdd:COG5002 28 LLLLLLLLLLLLLLLLLLLLLLLLLALLLLLLLLLLLLLALLLLLLLLLLLLALALLLLALLLLLLLLLLLLALLILLLL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 179 LLVWFIVAPLRKLTRWSMTLDDLAPDSQRPRFNYRELNVLADTLWNSVTRIKDFSQREERFLRYASHELRTPLAVIGMNL 258
Cdd:COG5002 108 LALLILLAALLLLLSELLLLLLLLGRLSLRLSALLLGLLLLAAVERDITELERLEQMRREFVANVSHELRTPLTSIRGYL 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 259 ELLDQPGRAPSP---HALQRIRRSALGMQQMTETLLWLSR-ESGELRDD-GHIEVGRLLEELLEEQQALSQRRGLTFHLD 333
Cdd:COG5002 188 ELLLDGAADDPEerrEYLEIILEEAERLSRLVNDLLDLSRlESGELKLEkEPVDLAELLEEVVEELRPLAEEKGIELELD 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 334 VEPHSLP----QTRARIIIGNLLRNALQYSDEG---VVEIVVRDRSLLIS---NPIG-----------------AAQGTE 386
Cdd:COG5002 268 LPEDPLLvlgdPDRLEQVLTNLLDNAIKYTPEGgtiTVSLREEDDQVRISvrdTGIGipeedlpriferfyrvdKSRSRE 347
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 15598274 387 ESmafGYGLGLDLVQRLCQKSGWRLHYSSDEQ---RFRCEL 424
Cdd:COG5002 348 TG---GTGLGLAIVKHIVEAHGGRIWVESEPGkgtTFTITL 385
|
|
| PRK10755 |
PRK10755 |
two-component system sensor histidine kinase PmrB; |
150-405 |
3.36e-15 |
|
two-component system sensor histidine kinase PmrB;
Pssm-ID: 236751 [Multi-domain] Cd Length: 356 Bit Score: 76.55 E-value: 3.36e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 150 LSDAIIDARVRQTWIVT------LSVTLPSLAAVG--LLVWF-----IVAPLRKLTR--WSMTLDDLAPDSQRPrfNYRE 214
Cdd:PRK10755 38 LVQATLSARNNDEHVMKeireavASLLVPSLVMVSltLLICFqavrwITRPLAELQKelEARTADNLTPIAIHS--STLE 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 215 LNVLADTLWNSVTRIKDFSQREERFLRYASHELRTPLAVIGMNLELLDQPGRAPSPHALQRIRRsalgMQQMTETLLWLS 294
Cdd:PRK10755 116 IEAVTSALNQLVSRLTSTLDQERLFTADVAHELRTPLAGIRLHLELLEKQHHIDVAPLIARLDQ----MMHTVEQLLQLA 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 295 RESGELRDDGHIEVGRLLEELLEEQQALS---QRRGLTFHLDVEPHSLP----QTRARIIIGNLLRNALQYSDEGV---- 363
Cdd:PRK10755 192 RAGQSFSSGHYQTVKLLEDVILPSQDELSemlEQRQQTLLLPESAADITvqgdATLLRLLLRNLVENAHRYSPEGStiti 271
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 15598274 364 --------VEIVVRDrsllISNPIGAAQGTEESMAF--------GYGLGLDLVQRLCQ 405
Cdd:PRK10755 272 klsqedggAVLAVED----EGPGIDESKCGELSKAFvrmdsrygGIGLGLSIVSRITQ 325
|
|
| PRK11100 |
PRK11100 |
sensory histidine kinase CreC; Provisional |
154-371 |
3.44e-15 |
|
sensory histidine kinase CreC; Provisional
Pssm-ID: 236846 [Multi-domain] Cd Length: 475 Bit Score: 77.19 E-value: 3.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 154 IIDARVRQTWIVTLSVTLPSLAAVGLLVWFIVAPLRKLTRW--SMTLDDLAPdsqRPRFNYRELNVLADTLWNSVTRIKD 231
Cdd:PRK11100 176 FIKRSERRILWAGALLLGIALLIGAGVVWWLNRSIRRLTRYadAVTEGKPVP---LPKLGSSELRELAQALESMRVKLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 232 fSQREERFLRYASHELRTPLAVIGMNLELLDQPgraPSPHALQR----IRRSALGMQQMTETLLWLSR-ES-GELRDDGH 305
Cdd:PRK11100 253 -KAYVEQYVQTLTHELKSPLAAIRGAAELLQED---PPPEDRARftgnILTQSARLQQLIDRLLELARlEQrQELEVLEP 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 306 IEVGRLLEELLEEQQALSQRRGLTFHLDVEPHSLPQTRA--RIIIGNLLRNALQYSDEGV------------VEIVVRDR 371
Cdd:PRK11100 329 VALAALLEELVEAREAQAAAKGITLRLRPDDARVLGDPFllRQALGNLLDNAIDFSPEGGtitlsaevdgeqVALSVEDQ 408
|
|
| phoR_proteo |
TIGR02966 |
phosphate regulon sensor kinase PhoR; Members of this protein family are the regulatory ... |
226-362 |
2.34e-14 |
|
phosphate regulon sensor kinase PhoR; Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems]
Pssm-ID: 274368 [Multi-domain] Cd Length: 333 Bit Score: 73.78 E-value: 2.34e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 226 VTRIKDFSQREERFLRYASHELRTPLAVIGMNLELLDQPGRAPSP---HALQRIRRSALGMQQMTETLLWLSR-ESGELR 301
Cdd:TIGR02966 104 VTRLRRLEQMRRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEewnRALEIMLEQSQRMQSLVEDLLTLSRlESAASP 183
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15598274 302 -DDGHIEVGRLLEELLEEQQALSQRRGLTFHLDVEPhSLP----QTRARIIIGNLLRNALQYSDEG 362
Cdd:TIGR02966 184 lEDEPVDMPALLDHLRDEAEALSQGKNHQITFEIDG-GVDvlgdEDELRSAFSNLVSNAIKYTPEG 248
|
|
| PRK10337 |
PRK10337 |
sensor protein QseC; Provisional |
163-418 |
6.53e-14 |
|
sensor protein QseC; Provisional
Pssm-ID: 182388 [Multi-domain] Cd Length: 449 Bit Score: 73.14 E-value: 6.53e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 163 WIVTLSVTLPSLAavgLLVWFIVAPLRKLTRwsmTLDDLAPDSQRPRFNYR---ELNVLADTLWNSVTRIKDFSQREERF 239
Cdd:PRK10337 167 WLVALPIMLIILM---VLLGRELAPLKKLAL---ALRMRDPDSETPLNATGvpsEVRPLVEALNQLFARTHAMMVRERRF 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 240 LRYASHELRTPLAVIGMNLEL--LDQPGRAPSPHALQRIRRSALGMQQMTETLLWLSR-ESGELRDD-GHIEVGRLLEEL 315
Cdd:PRK10337 241 TSDAAHELRSPLAALKVQTEVaqLSDDDPQARKKALLQLHAGIDRATRLVDQLLTLSRlDSLDNLQDvAEIPLEDLLQSA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 316 LEEQQALSQRRGLTFHLDVEPHSLPQTRA----RIIIGNLLRNALQYSDEG-VVEIVVRDRSLLIS-NPIGAAQ------ 383
Cdd:PRK10337 321 VMDIYHTAQQAGIDVRLTLNAHPVIRTGQplllSLLVRNLLDNAIRYSPQGsVVDVTLNARNFTVRdNGPGVTPealari 400
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 15598274 384 --------GTEESmafGYGLGLDLVQRLCQKSGWRLHYSSDEQ 418
Cdd:PRK10337 401 gerfyrppGQEAT---GSGLGLSIVRRIAKLHGMNVSFGNAPE 440
|
|
| HisKA |
cd00082 |
Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed ... |
233-295 |
1.01e-11 |
|
Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Pssm-ID: 119399 [Multi-domain] Cd Length: 65 Bit Score: 59.92 E-value: 1.01e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15598274 233 SQREERFLRYASHELRTPLAVIGMNLELLDQPGRAPSPH--ALQRIRRSALGMQQMTETLLWLSR 295
Cdd:cd00082 1 LQAKGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQreYLERIREEAERLLRLINDLLDLSR 65
|
|
| HisKA |
pfam00512 |
His Kinase A (phospho-acceptor) domain; dimerization and phospho-acceptor domain of histidine ... |
237-295 |
7.15e-11 |
|
His Kinase A (phospho-acceptor) domain; dimerization and phospho-acceptor domain of histidine kinases.
Pssm-ID: 459839 [Multi-domain] Cd Length: 66 Bit Score: 57.61 E-value: 7.15e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 237 ERFLRYASHELRTPLAVIGMNLELL-DQPGRAPSPHALQRIRRSALGMQQMTETLLWLSR 295
Cdd:pfam00512 3 SEFLANLSHELRTPLTAIRGYLELLrDEKLDEEQREYLETILRSAERLLRLINDLLDLSR 62
|
|
| TMAO_torS |
TIGR02956 |
TMAO reductase sytem sensor TorS; This protein, TorS, is part of a regulatory system for the ... |
233-427 |
1.29e-10 |
|
TMAO reductase sytem sensor TorS; This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems]
Pssm-ID: 274362 [Multi-domain] Cd Length: 968 Bit Score: 63.64 E-value: 1.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 233 SQREERFLRYASHELRTPL-AVIGmNLELLDQPGRAPS-PHALQRIRRSALGMQQMTETLLWLSR-ESGELR-DDGHIEV 308
Cdd:TIGR02956 461 NRAKSAFLATMSHEIRTPLnGILG-TLELLGDTGLTSQqQQYLQVINRSGESLLDILNDILDYSKiEAGHLSiSPRPFDL 539
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 309 GRLLEELLEEQQALSQRRGLTFHLDVePHSLPQT------RARIIIGNLLRNALQYSDEGVVEIVVR---DRSLLIS--- 376
Cdd:TIGR02956 540 NALLDDVHHLMVSRAQLKGIQLRLNI-PEQLPNWwqgdgpRIRQVLINLVGNAIKFTDRGSVVLRVSlndDSSLLFEved 618
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15598274 377 NPIGAAQGTEESM--AF----------GYGLGLDLVQRLCQKSGWRLHYSSDEQR---FRCELLFP 427
Cdd:TIGR02956 619 TGCGIAEEEQATLfdAFtqadgrrrsgGTGLGLAISQRLVEAMDGELGVESELGVgscFWFTLPLT 684
|
|
| HisKA |
smart00388 |
His Kinase A (phosphoacceptor) domain; Dimerisation and phosphoacceptor domain of histidine ... |
237-295 |
3.23e-10 |
|
His Kinase A (phosphoacceptor) domain; Dimerisation and phosphoacceptor domain of histidine kinases.
Pssm-ID: 214644 [Multi-domain] Cd Length: 66 Bit Score: 55.65 E-value: 3.23e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 237 ERFLRYASHELRTPLAVIGMNLELLDQPGRAPSPH-ALQRIRRSALGMQQMTETLLWLSR 295
Cdd:smart00388 3 REFLANLSHELRTPLTAIRGYLELLLDTELSEEQReYLETILREAERLLRLINDLLDLSR 62
|
|
| cztS_silS_copS |
TIGR01386 |
heavy metal sensor kinase; Members of this family contain a sensor histidine kinase domain ... |
157-427 |
1.07e-09 |
|
heavy metal sensor kinase; Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Pssm-ID: 273593 [Multi-domain] Cd Length: 457 Bit Score: 60.09 E-value: 1.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 157 ARVRQTWIVTLSVTLPSLAAVGllvWFIV----APLRKLTRW--SMTLDDLA---PDSQRPRfnyrELNVLADTLWNSVT 227
Cdd:TIGR01386 160 DALRKWLILIAVLLVLLTALLG---WWITrlglEPLRRLSAVaaRISPESLDqrlDPSRAPA----ELRELAQSFNAMLG 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 228 RIKDFSQREERFLRYASHELRTPLA-VIGMNLELLDQPGRAP--------SPHALQRIRRsalgmqqMTETLLWLSR-ES 297
Cdd:TIGR01386 233 RLEDAFQRLSQFSADLAHELRTPLTnLLGQTQVALSQPRTGEeyrevlesNLEELERLSR-------MVSDMLFLARaDN 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 298 GELRDDGH-IEVGRLLEELLEEQQALSQRRGLTFHLDVEPhSLPQTRA--RIIIGNLLRNALQYS-DEGVVEIVVRDRS- 372
Cdd:TIGR01386 306 GQLALERVrLDLAAELAKVAEYFEPLAEERGVRIRVEGEG-LVRGDPQmfRRAISNLLSNALRHTpDGGTITVRIERRSd 384
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15598274 373 ---LLISNPiGAAQGTEE-SMAF---------------GYGLGLDLVQRLCQKSGWRLHYSSDEQRFRCELLFP 427
Cdd:TIGR01386 385 evrVSVSNP-GPGIPPEHlSRLFdrfyrvdparsnsgeGTGLGLAIVRSIMEAHGGRASAESPDGKTRFILRFP 457
|
|
| MtrAB_MtrB |
NF040691 |
MtrAB system histidine kinase MtrB; |
159-368 |
2.05e-08 |
|
MtrAB system histidine kinase MtrB;
Pssm-ID: 468655 [Multi-domain] Cd Length: 507 Bit Score: 56.19 E-value: 2.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 159 VRQTWIVTLsvtLPSLAAVGLLVW----FIVAPLRKLTRWSMTL--------------DDLAPDSqrprfnyRELNVLAD 220
Cdd:NF040691 186 VRGTLLLGG---LALVVLLGLIAWlvtrQVVAPVRSAARTAERFaagdlsermpvkgeDDLARLA-------RSFNQMAD 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 221 TLWNSVTRIKDFSQREERFLRYASHELRTPLAVIGMNLELL-DQ-----PGRAPSPHALQR-IRRsalgMQQMTETLLWL 293
Cdd:NF040691 256 SLQRQIRQLEELSRLQQRFVSDVSHELRTPLTTIRMAADVIhDSrddfdPATARSAELLHTeLDR----FESLLSDLLEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 294 SR----------ESGELRDDGHIEVGRLleelleeqQALSQRRGLTFHLDvephsLPQTRARI---------IIGNLLRN 354
Cdd:NF040691 332 SRfdagaaeldvEPVDLRPLVRRVVDAL--------RQLAERAGVELRVD-----APGTPVVAevdprrverVLRNLVVN 398
|
250
....*....|....
gi 15598274 355 ALQYSDEGVVEIVV 368
Cdd:NF040691 399 AIEHGEGKPVVVTV 412
|
|
| COG4251 |
COG4251 |
Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal ... |
237-371 |
3.39e-08 |
|
Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms];
Pssm-ID: 443393 [Multi-domain] Cd Length: 503 Bit Score: 55.56 E-value: 3.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 237 ERFLRYASHELRTPLAVIGMNLELL-DQPGRAPSPHA---LQRIRRSALGMQQMTETLLWLSRESGELRDDGHIEVGRLL 312
Cdd:COG4251 283 EQFAYVASHDLREPLRKISGFSQLLeEDYGDKLDEEGreyLERIRDAAERMQALIDDLLAYSRVGRQELEFEPVDLNELL 362
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15598274 313 EELLEEQQALSQRRGLTFHLDvephSLPQTRA-----RIIIGNLLRNALQYSDEG---VVEIVVRDR 371
Cdd:COG4251 363 EEVLEDLEPRIEERGAEIEVG----PLPTVRGdptllRQVFQNLISNAIKYSRPGeppRIEIGAERE 425
|
|
| COG4191 |
COG4191 |
Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal ... |
245-424 |
3.60e-08 |
|
Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms];
Pssm-ID: 443345 [Multi-domain] Cd Length: 361 Bit Score: 54.80 E-value: 3.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 245 HELRTPLAVIGMNLELL-----DQPGRAPSPHALQRIRRSALGMQQMTETLLWLSRESGELRDDGHIEVGrlleelleEQ 319
Cdd:COG4191 151 HEINNPLAAILGNAELLrrrleDEPDPEELREALERILEGAERAAEIVRSLRAFSRRDEEEREPVDLNEL--------ID 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 320 QALS------QRRGLTFHLDVEPHsLPQTRARI-----IIGNLLRNALQ--------------YSDEGVVEIVVRDRSLL 374
Cdd:COG4191 223 EALEllrprlKARGIEVELDLPPD-LPPVLGDPgqleqVLLNLLINAIDameegeggritistRREGDYVVISVRDNGPG 301
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15598274 375 ISNPI------------GAAQGTeesmafgyGLGLDLVQRLCQKSGWRLHYSSDEQ---RFRCEL 424
Cdd:COG4191 302 IPPEVlerifepffttkPVGKGT--------GLGLSISYGIVEKHGGRIEVESEPGggtTFTITL 358
|
|
| NtrY |
COG5000 |
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ... |
244-431 |
3.67e-08 |
|
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];
Pssm-ID: 444024 [Multi-domain] Cd Length: 422 Bit Score: 55.35 E-value: 3.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 244 SHELRTPLAVIGMNLELL-------DQPGRAPSPHALQRIRRSALGMQQMTETLLWLSR-ESGELRDdghIEVGRLLEEL 315
Cdd:COG5000 209 AHEIKNPLTPIQLSAERLrrkladkLEEDREDLERALDTIIRQVDRLKRIVDEFLDFARlPEPQLEP---VDLNELLREV 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 316 LEEQQALSQRRGLTFHLDVEPHSLP----QTRARIIIGNLLRNALQ------------YSDEGVVEIVVRDrsllisNPI 379
Cdd:COG5000 286 LALYEPALKEKDIRLELDLDPDLPEvladRDQLEQVLINLLKNAIEaieeggeievstRREDGRVRIEVSD------NGP 359
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15598274 380 GAAQGTEESmAF---------GYGLGLDLVQRLCQKSGWRLHYSSDEQ---RFRceLLFPATPD 431
Cdd:COG5000 360 GIPEEVLER-IFepffttkpkGTGLGLAIVKKIVEEHGGTIELESRPGggtTFT--IRLPLAEE 420
|
|
| BaeS_SmeS |
NF012163 |
sensor histidine kinase efflux regulator BaeS; |
158-362 |
5.48e-07 |
|
sensor histidine kinase efflux regulator BaeS;
Pssm-ID: 411086 [Multi-domain] Cd Length: 457 Bit Score: 51.75 E-value: 5.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 158 RVRQTWIVTLSVTLPSLAAVGLLVWFIVAPLRKL-------------TRWSMT----LDDLAPDsqrprfnyreLNVLAD 220
Cdd:NF012163 162 QKRASWLIVALALLLAALAAFLLARGLLAPVKRLveathrlaagdytTRVTPTsndeLGKLAQD----------FNQLAS 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 221 TLwnsvtriKDFSQREERFLRYASHELRTPLAVIGMNLELLDQPGRAPSPHALQRIRRSALGMQQMTETLLWLSR-ESGE 299
Cdd:NF012163 232 TL-------EKNEQMRRDFMADISHELRTPLAVLRAELEAIQDGIRKFTPESLDSLQAEVGTLTKLVDDLHDLSMsDEGA 304
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 300 LR----DDGHIEVGRLLEELLEEQQAlsqRRGLTFHLDVEPHSL---PQTRARIIIGNLLRNALQYSDEG 362
Cdd:NF012163 305 LAyqkaSVDLVPLLEVEGGAFRERFA---SAGLELEVSLPDSSLvfgDRDRLMQLFNNLLENSLRYTDSG 371
|
|
| HATPase_c |
pfam02518 |
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the ... |
341-430 |
1.50e-06 |
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.
Pssm-ID: 460579 [Multi-domain] Cd Length: 109 Bit Score: 46.59 E-value: 1.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 341 QTRARIIIGNLLRNALQY-----------SDEGVVEIVVRDRSL-----LISNPIGAAQGTEESMAFGYGLGLDLVQRLC 404
Cdd:pfam02518 3 ELRLRQVLSNLLDNALKHaakageitvtlSEGGELTLTVEDNGIgippeDLPRIFEPFSTADKRGGGGTGLGLSIVRKLV 82
|
90 100
....*....|....*....|....*..
gi 15598274 405 QKSGWRLHYSSDEQR-FRCELLFPATP 430
Cdd:pfam02518 83 ELLGGTITVESEPGGgTTVTLTLPLAQ 109
|
|
| PRK09303 |
PRK09303 |
histidine kinase; |
237-413 |
3.62e-06 |
|
histidine kinase;
Pssm-ID: 236462 [Multi-domain] Cd Length: 380 Bit Score: 48.79 E-value: 3.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 237 ERFLRYASHELRTPLAVIGMNLELLD----QPGRAPSPHALQR----IRRSALGMQQMTETLLWLSRESGE-LRDDGH-I 306
Cdd:PRK09303 152 DRVLAMLAHDLRTPLTAASLALETLElgqiDEDTELKPALIEQlqdqARRQLEEIERLITDLLEVGRTRWEaLRFNPQkL 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 307 EVGRLLEELLEEQQALSQRRGLTFHLDVePHSLP-----QTRARIIIGNLLRNALQYS-DEGVVEIVVRDR-------SL 373
Cdd:PRK09303 232 DLGSLCQEVILELEKRWLAKSLEIQTDI-PSDLPsvyadQERIRQVLLNLLDNAIKYTpEGGTITLSMLHRttqkvqvSI 310
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 15598274 374 LISNP----------------IGAAQGTEesmafGYGLGLDLVQRLCqksgwRLHY 413
Cdd:PRK09303 311 CDTGPgipeeeqerifedrvrLPRDEGTE-----GYGIGLSVCRRIV-----RVHY 356
|
|
| HATPase_c |
smart00387 |
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases. |
345-424 |
5.24e-06 |
|
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Pssm-ID: 214643 [Multi-domain] Cd Length: 111 Bit Score: 44.95 E-value: 5.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 345 RIIIGNLLRNALQYSDE-GVVEIVVRDRS--LLIS---NPIG--AAQGTEESMAF-----------GYGLGLDLVQRLCQ 405
Cdd:smart00387 7 RQVLSNLLDNAIKYTPEgGRITVTLERDGdhVEITvedNGPGipPEDLEKIFEPFfrtdkrsrkigGTGLGLSIVKKLVE 86
|
90 100
....*....|....*....|..
gi 15598274 406 KSGWRLHYSSDEQ---RFRCEL 424
Cdd:smart00387 87 LHGGEISVESEPGggtTFTITL 108
|
|
| phoR |
PRK11006 |
phosphate regulon sensor histidine kinase PhoR; |
226-369 |
4.55e-05 |
|
phosphate regulon sensor histidine kinase PhoR;
Pssm-ID: 182895 [Multi-domain] Cd Length: 430 Bit Score: 45.39 E-value: 4.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 226 VTRIKDFSQREERFLRYASHELRTPLAVIGMNLELL-DQPGRAPSPH-ALQRIRRSALGMQQMTETLLWLSR-ESGELRD 302
Cdd:PRK11006 194 VTQMHQLEGARRNFFANVSHELRTPLTVLQGYLEMMqDQPLEGALREkALHTMREQTQRMEGLVKQLLTLSKiEAAPTID 273
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15598274 303 -DGHIEVGRLLEELLEEQQALSQRR-GLTFHLDvepHSLP----QTRARIIIGNLLRNALQYSDEGvVEIVVR 369
Cdd:PRK11006 274 lNEKVDVPMMLRVLEREAQTLSQGKhTITFEVD---NSLKvfgnEDQLRSAISNLVYNAVNHTPEG-THITVR 342
|
|
| PRK09835 |
PRK09835 |
Cu(+)/Ag(+) sensor histidine kinase; |
127-378 |
8.51e-05 |
|
Cu(+)/Ag(+) sensor histidine kinase;
Pssm-ID: 182101 [Multi-domain] Cd Length: 482 Bit Score: 44.76 E-value: 8.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 127 QPLADGKTLY-LYdndAAGSIDTPLSdaiidarvrqtWIVTLSVTLPSLAAV-GLLVWFIV--------APLRKLTR--- 193
Cdd:PRK09835 156 GPLVDGKPIYtLL---IALSIDFHLH-----------YINDLKNKLIMTASViSLLIVFIVllavhkghAPIRSVSRqiq 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 194 --WSMTLD-DLAPDSQRPrfnyrELNVLADTLWNSVTRIKDFSQREERFLRYASHELRTPLAVIGMNLEL-LDQpgrAPS 269
Cdd:PRK09835 222 niTSKDLDvRLDPQTVPI-----ELEQLVLSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIaLSQ---SRS 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 270 PHALQRIRRSALG----MQQMTETLLWLSR-ESGELRD-----DGHIEVGRLLEELleeqQALSQRRGLTFHLDVEPHSL 339
Cdd:PRK09835 294 QKELEDVLYSNLEeltrMAKMVSDMLFLAQaDNNQLIPekkmlDLADEVGKVFDFF----EAWAEERGVELRFVGDPCQV 369
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 15598274 340 ---PQTRARiIIGNLLRNALQYSDEG---VVEIVVRDRS--LLISNP 378
Cdd:PRK09835 370 agdPLMLRR-AISNLLSNALRYTPAGeaiTVRCQEVDHQvqLVVENP 415
|
|
| PRK10549 |
PRK10549 |
two-component system sensor histidine kinase BaeS; |
160-375 |
8.97e-05 |
|
two-component system sensor histidine kinase BaeS;
Pssm-ID: 182539 [Multi-domain] Cd Length: 466 Bit Score: 44.62 E-value: 8.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 160 RQTW-IVTLSvTLPSLAAVGLLVWFIVAPLRKL-------------TRWSMT----LDDLAPDsqrprfnyreLNVLADT 221
Cdd:PRK10549 164 RTSWlIVALS-TLLAALATFLLARGLLAPVKRLvegthklaagdftTRVTPTsrdeLGRLAQD----------FNQLAST 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 222 LWnsvtriKDFSQREErFLRYASHELRTPLAVIGMNLELLDQPGRAPSPHALQRIRRSALGMQQMTETLLWLSresgeLR 301
Cdd:PRK10549 233 LE------KNEQMRRD-FMADISHELRTPLAVLRGELEAIQDGVRKFTPESVASLQAEVGTLTKLVDDLHQLS-----LS 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 302 DDG-------HIEVGRLLEELLEEQQALSQRRGLTFHLDV--------EPHSLPQtrariIIGNLLRNALQYSDEG---V 363
Cdd:PRK10549 301 DEGalayrktPVDLVPLLEVAGGAFRERFASRGLTLQLSLpdsatvfgDPDRLMQ-----LFNNLLENSLRYTDSGgslH 375
|
250
....*....|..
gi 15598274 364 VEIVVRDRSLLI 375
Cdd:PRK10549 376 ISAEQRDKTLRL 387
|
|
| PRK11466 |
PRK11466 |
hybrid sensory histidine kinase TorS; Provisional |
144-415 |
6.24e-04 |
|
hybrid sensory histidine kinase TorS; Provisional
Pssm-ID: 236914 [Multi-domain] Cd Length: 914 Bit Score: 42.20 E-value: 6.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 144 GSIDTPLSDAiidARVRQtwivtlsvtlpsLAAVGLLVWFIVAPLRKLTRWSMTLDDLApdsqrpRFNYRELNVLADTLW 223
Cdd:PRK11466 373 GDIDSPFPET---AGVRE------------LDTIGRLMDAFRSNVHALNRHREQLAAQV------KARTAELQELVIEHR 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 224 NSVTRIKDFSQREERFLRYASHELRTPL-AVIGMNLELLDQPGRAPSPHALQRIRRSAlgmqqmtETLLWLSresGELRD 302
Cdd:PRK11466 432 QARAEAEKASQAKSAFLAAMSHEIRTPLyGILGTAQLLADNPALNAQRDDLRAITDSG-------ESLLTIL---NDILD 501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 303 DGHIEVGRLLEEL------------LEEQQALSQRRGLTFHLDVE-PHSLPQT------RARIIIGNLLRNALQYSDEGV 363
Cdd:PRK11466 502 YSAIEAGGKNVSVsdepfeprplleSTLQLMSGRVKGRPIRLATDiADDLPTAlmgdprRIRQVITNLLSNALRFTDEGS 581
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15598274 364 veIVVR----DRSLLISNP-----IGAAQGTEESMAF--------GYGLGLDLVQRLCQKSGWRLHYSS 415
Cdd:PRK11466 582 --IVLRsrtdGEQWLVEVEdsgcgIDPAKLAEIFQPFvqvsgkrgGTGLGLTISSRLAQAMGGELSATS 648
|
|
| marine_sort_HK |
TIGR03785 |
proteobacterial dedicated sortase system histidine kinase; This histidine kinase protein is ... |
214-290 |
7.23e-04 |
|
proteobacterial dedicated sortase system histidine kinase; This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Pssm-ID: 163497 [Multi-domain] Cd Length: 703 Bit Score: 42.04 E-value: 7.23e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15598274 214 ELNVLADTLWNSVTRIKDFSQREERFLRYASHELRTPLAVIGMNLELLDQpgRAPSPHALQRIRRSALGMQQMTETL 290
Cdd:TIGR03785 463 EIGDLSRSFAQMVARLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLEL--QALEQEKQKYLERAREGTERLSMIL 537
|
|
| NtrB |
COG3852 |
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms]; |
147-431 |
2.57e-03 |
|
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];
Pssm-ID: 443061 [Multi-domain] Cd Length: 361 Bit Score: 39.83 E-value: 2.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 147 DTPLSDAIIDARVRQTWIVTLSVTLPSLAAVGLLVWFIVAPLR---KLTRWSMTLDDlapdsqrprfnyrelnvladtlw 223
Cdd:COG3852 59 DSPLRELLERALAEGQPVTEREVTLRRKDGEERPVDVSVSPLRdaeGEGGVLLVLRD----------------------- 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 224 nsVTRIKDFSQREERFLRYAS---------HELRTPLAVIGMNLELL-DQPGRAPSPHALQRIRRSALGMQQMTETLLWL 293
Cdd:COG3852 116 --ITERKRLERELRRAEKLAAvgelaaglaHEIRNPLTGIRGAAQLLeRELPDDELREYTQLIIEEADRLNNLVDRLLSF 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 294 SRESGELRDDGHI-----EVgrlleelleEQQALSQ-RRGLTFHLDVEPhSLPQTRA---RII--IGNLLRNALQY-SDE 361
Cdd:COG3852 194 SRPRPPEREPVNLhevleRV---------LELLRAEaPKNIRIVRDYDP-SLPEVLGdpdQLIqvLLNLVRNAAEAmPEG 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 362 GVVEIVVRDRSLLISNPIGAAQ-----------GTEESMA---F---------GYGLGLDLVQRLCQKSGWRLHYSSDEQ 418
Cdd:COG3852 264 GTITIRTRVERQVTLGGLRPRLyvrievidngpGIPEEILdriFepffttkekGTGLGLAIVQKIVEQHGGTIEVESEPG 343
|
330
....*....|....*.
gi 15598274 419 R---FRceLLFPATPD 431
Cdd:COG3852 344 KgttFR--IYLPLEQA 357
|
|
| CitA |
COG3290 |
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction ... |
326-419 |
4.03e-03 |
|
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction mechanisms];
Pssm-ID: 442519 [Multi-domain] Cd Length: 389 Bit Score: 39.06 E-value: 4.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 326 RGLTFHLDVEPHsLPQTRAR-----IIIGNLLRNALQ----------------YSDEGVVEIVVRDRSLLISNPIGA--- 381
Cdd:COG3290 260 RGIDLTIDIDSD-LPDLPLSdtdlvTILGNLLDNAIEaveklpeeerrvelsiRDDGDELVIEVEDSGPGIPEELLEkif 338
|
90 100 110
....*....|....*....|....*....|....*...
gi 15598274 382 AQGTEESMAFGYGLGLDLVQRLCQKSGWRLHYSSDEQR 419
Cdd:COG3290 339 ERGFSTKLGEGRGLGLALVKQIVEKYGGTIEVESEEGE 376
|
|
| PRK10841 |
PRK10841 |
two-component system sensor histidine kinase RcsC; |
233-376 |
6.62e-03 |
|
two-component system sensor histidine kinase RcsC;
Pssm-ID: 182772 [Multi-domain] Cd Length: 924 Bit Score: 38.80 E-value: 6.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 233 SQREERFLRYASHELRTPL-AVIGmNLELLDQpgrapspHAL-QRIRRSALGMQQMTETLLWL-------SR-ESGELRd 302
Cdd:PRK10841 444 SQSKSMFLATVSHELRTPLyGIIG-NLDLLQT-------KELpKGVDRLVTAMNNSSSLLLKIisdildfSKiESEQLK- 514
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598274 303 dghIEVGRLLEELLEEQ-----QALSQRRGLTFHLDVEPhSLPQT------RARIIIGNLLRNALQYSDEG--VVEIVVR 369
Cdd:PRK10841 515 ---IEPREFSPREVINHitanyLPLVVKKRLGLYCFIEP-DVPVAlngdpmRLQQVISNLLSNAIKFTDTGciVLHVRVD 590
|
....*..
gi 15598274 370 DRSLLIS 376
Cdd:PRK10841 591 GDYLSFR 597
|
|
| |
