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Conserved domains on  [gi|15598100|ref|NP_251594|]
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precorrin-2 C(20)-methyltransferase [Pseudomonas aeruginosa PAO1]

Protein Classification

precorrin-2 C(20)-methyltransferase( domain architecture ID 10792716)

precorrin-2 C(20)-methyltransferase catalyzes methylation at the C-20 position of the cyclic tetrapyrrole ring of precorrin-2 using S-adenosylmethionine as a methyl group source to produce precorrin-3A in the pathway toward cobalamin biosynthesis

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK05990 PRK05990
precorrin-2 C(20)-methyltransferase; Reviewed
5-245 1.04e-176

precorrin-2 C(20)-methyltransferase; Reviewed


:

Pssm-ID: 180341  Cd Length: 241  Bit Score: 485.26  E-value: 1.04e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100    5 VKGRLLGLGVGPGDPELITLKALRLLRAAPVVGYFVAKGKKGNAFGIIEAHLDQAQVRLPLVYPVTTEKLEPPLCYETII 84
Cdd:PRK05990   1 AKGRLIGLGVGPGDPELLTLKALRLLQAAPVVAYFVAKGKKGNAFGIVEAHLSPGQTLLPLVYPVTTEILPPPLCYETVI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100   85 SDFYDTAAEQLAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLATRYESEVVPGVCSMLGGAAVLGAPLVYRNQSLSVLSG 164
Cdd:PRK05990  81 ADFYDTSAEAVAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLAPRYETEVIPGVCSMLGCWSVLGAPLVYRNQSLSVLSG 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  165 VLPEEELRRRLADADAAVVMKLGRNFDKVRRVLVELGLERRALYVERATMANQRIVPLERVEPMASPYFSLIVVPGDKWQ 244
Cdd:PRK05990 161 VLPEEELRRRLADADAAVIMKLGRNLDKVRRVLAALGLLDRALYVERATMANQRIVPLAEVDPMASPYFSLILVPGEKWQ 240

                 .
gi 15598100  245 G 245
Cdd:PRK05990 241 G 241
 
Name Accession Description Interval E-value
PRK05990 PRK05990
precorrin-2 C(20)-methyltransferase; Reviewed
5-245 1.04e-176

precorrin-2 C(20)-methyltransferase; Reviewed


Pssm-ID: 180341  Cd Length: 241  Bit Score: 485.26  E-value: 1.04e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100    5 VKGRLLGLGVGPGDPELITLKALRLLRAAPVVGYFVAKGKKGNAFGIIEAHLDQAQVRLPLVYPVTTEKLEPPLCYETII 84
Cdd:PRK05990   1 AKGRLIGLGVGPGDPELLTLKALRLLQAAPVVAYFVAKGKKGNAFGIVEAHLSPGQTLLPLVYPVTTEILPPPLCYETVI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100   85 SDFYDTAAEQLAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLATRYESEVVPGVCSMLGGAAVLGAPLVYRNQSLSVLSG 164
Cdd:PRK05990  81 ADFYDTSAEAVAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLAPRYETEVIPGVCSMLGCWSVLGAPLVYRNQSLSVLSG 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  165 VLPEEELRRRLADADAAVVMKLGRNFDKVRRVLVELGLERRALYVERATMANQRIVPLERVEPMASPYFSLIVVPGDKWQ 244
Cdd:PRK05990 161 VLPEEELRRRLADADAAVIMKLGRNLDKVRRVLAALGLLDRALYVERATMANQRIVPLAEVDPMASPYFSLILVPGEKWQ 240

                 .
gi 15598100  245 G 245
Cdd:PRK05990 241 G 241
CobF COG2243
Precorrin-2 methylase [Coenzyme transport and metabolism]; Precorrin-2 methylase is part of ...
6-239 5.98e-103

Precorrin-2 methylase [Coenzyme transport and metabolism]; Precorrin-2 methylase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 441844 [Multi-domain]  Cd Length: 229  Bit Score: 298.17  E-value: 5.98e-103
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100   6 KGRLLGLGVGPGDPELITLKALRLLRAAPVVGYFVA-KGKKGNAFGIIEAHLDQAQVrLPLVYPVTTEKlepplcyeTII 84
Cdd:COG2243   2 MGKLYGVGVGPGDPELLTLKAVRALREADVIAYPAKgAGKASLAREIVAPYLPPARI-VELVFPMTTDY--------EAL 72
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  85 SDFYDTAAEQLAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLATR-YESEVVPGVCSMLGGAAVLGAPLVYRNQSLSVLS 163
Cdd:COG2243  73 VAAWDEAAARIAEELEAGRDVAFLTEGDPSLYSTFMYLLERLRERgFEVEVIPGITSFSAAAAALGIPLAEGDEPLTVLP 152
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15598100 164 GVLPEEELRRRLADADAAVVMKLGRNFDKVRRVLVELGLERRALYVERATMANQRIVP-LERVEPMASPYFSLIVVP 239
Cdd:COG2243 153 GTLLEEELERALDDFDTVVIMKVGRNFPKVREALEEAGLLDRAWYVERAGMPDERIVPgLAEVDIEEAPYFSLILVR 229
Precorrin_2_C20_MT cd11645
Precorrin-2 C20-methyltransferase, also named CobI or CbiL; Precorrin-2 C20-methyltransferase ...
13-239 2.76e-82

Precorrin-2 C20-methyltransferase, also named CobI or CbiL; Precorrin-2 C20-methyltransferase (also known as S-adenosyl-L-methionine--precorrin-2 methyltransferase) participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. Precorrin-2 C20-methyltransferase catalyzes methylation at the C-20 position of a cyclic tetrapyrrole ring of precorrin-2 using S-adenosylmethionine as a methyl group source to produce precorrin-3A. In the anaerobic pathway, cobalt is inserted into precorrin-2 by CbiK to generate cobalt-precorrin-2, which is the substrate for CbiL, a C20 methyltransferase. In Clostridium difficile, CbiK and CbiL are fused into a bifunctional enzyme. In the aerobic pathway, the precorrin-2 C20-methyltransferase is named CobI. This family includes CbiL and CobI precorrin-2 C20-methyltransferases, both as stand-alone enzymes and when CbiL forms part of a bifunctional enzyme.


Pssm-ID: 381172 [Multi-domain]  Cd Length: 223  Bit Score: 245.50  E-value: 2.76e-82
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  13 GVGPGDPELITLKALRLLRAAPVVGYFVAKGKKGN-AFGIIEAHLDQAQVRLPLVYPVTTEKlepplcyeTIISDFYDTA 91
Cdd:cd11645   2 GVGPGDPELLTLKAVRILKEADVIFVPVSKGGEGSaALIIAAALLIPDKEIIPLEFPMTKDR--------EELEEAWDEA 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  92 AEQLAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLATR-YESEVVPGVCSMLGGAAVLGAPLVYRNQSLSVLSGVLPEEE 170
Cdd:cd11645  74 AEEIAEELKEGKDVAFLTLGDPSLYSTFSYLLERLRAPgVEVEIIPGITSFSAAAARLGIPLAEGDESLAILPATYDEEE 153
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100 171 LRRRLADADAAVVMKLGRNFDKVRRVLVELGLERRALYVERATMANQRIVP-LERVEPMASPYFSLIVVP 239
Cdd:cd11645 154 LEKALENFDTVVLMKVGRNLEEIKELLEELGLLDKAVYVERCGMEGERIYTdLEELKEEKLPYFSLIIVK 223
cobI_cbiL TIGR01467
precorrin-2 C(20)-methyltransferase; This model represents precorrin-2 C(20)-methyltransferase, ...
7-240 2.54e-75

precorrin-2 C(20)-methyltransferase; This model represents precorrin-2 C(20)-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 273642 [Multi-domain]  Cd Length: 230  Bit Score: 227.96  E-value: 2.54e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100     7 GRLLGLGVGPGDPELITLKALRLLRAAPVVGYFV-AKGKKGNAFGIIEAHLDQAQVR-LPLVYPVTTEKlepplcyeTII 84
Cdd:TIGR01467   1 GKLYGVGVGPGDPELITVKALEALRSADVIAVPAsKKGRESLARKIVEDYLKPNDTRiLELVFPMTKDR--------DEL 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100    85 SDFYDTAAEQLAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLA-TRYESEVVPGVCSMLGGAAVLGAPLVYRNQSLSVLS 163
Cdd:TIGR01467  73 EKAWDEAAEAVAAELEEGRDVAFLTLGDPSLYSTFSYLLQRLQgMGIEVEVVPGITSFAACASAAGLPLVEGDESLAILP 152
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15598100   164 GVLPEEELRRRLADADAAVVMKLGRNFDKVRRVLVELGLERRALYVERATMANQRIVPLER-VEPMASPYFSLIVVPG 240
Cdd:TIGR01467 153 ATAGEAELEKALAEFDTVVLMKVGRNLPQIKEALAKLGRLDAAVVVERATMPDEKIVDLVReAIDDALPYFSTILVRR 230
TP_methylase pfam00590
Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of ...
8-220 7.11e-43

Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of diverse substrates. This family includes a related group of bacterial proteins of unknown function. This family includes the methylase Dipthine synthase.


Pssm-ID: 425769 [Multi-domain]  Cd Length: 209  Bit Score: 144.41  E-value: 7.11e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100     8 RLLGLGVGPGDPELITLKALRLLRAAPVVgyfvaKGKKGNAFGIIEAHLDQAqvrlplVYPVTTEKLEPplcyetiISDF 87
Cdd:pfam00590   1 KLYLVGVGPGDPDLLTLRALRALKEADVV-----LGDDSRALEILLDLLPED------LYFPMTEDKEP-------LEEA 62
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100    88 YDTAAEQLAAHLDAGRDVAVICEGDPFFYGSYMYLHDRL-ATRYESEVVPGVCSMLGGAAVLGAPLVYRNQSLSVLS--- 163
Cdd:pfam00590  63 YEEIAEALAAALRAGKDVARLVSGDPLVYGTGSYLVEALrAAGIDVEVVPGVSSAQAAAARLGIPLTEGGEVLSVLFlpg 142
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15598100   164 -GVLPEEELRRRLADADAAVVMKLGRNFDKVRRVLVEL-GLERRALYVERATMANQRIV 220
Cdd:pfam00590 143 lARIELRLLEALLANGDTVVLLYGPRRLAELAELLLELyPDTTPVAVVERAGTPDEKVV 201
 
Name Accession Description Interval E-value
PRK05990 PRK05990
precorrin-2 C(20)-methyltransferase; Reviewed
5-245 1.04e-176

precorrin-2 C(20)-methyltransferase; Reviewed


Pssm-ID: 180341  Cd Length: 241  Bit Score: 485.26  E-value: 1.04e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100    5 VKGRLLGLGVGPGDPELITLKALRLLRAAPVVGYFVAKGKKGNAFGIIEAHLDQAQVRLPLVYPVTTEKLEPPLCYETII 84
Cdd:PRK05990   1 AKGRLIGLGVGPGDPELLTLKALRLLQAAPVVAYFVAKGKKGNAFGIVEAHLSPGQTLLPLVYPVTTEILPPPLCYETVI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100   85 SDFYDTAAEQLAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLATRYESEVVPGVCSMLGGAAVLGAPLVYRNQSLSVLSG 164
Cdd:PRK05990  81 ADFYDTSAEAVAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLAPRYETEVIPGVCSMLGCWSVLGAPLVYRNQSLSVLSG 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  165 VLPEEELRRRLADADAAVVMKLGRNFDKVRRVLVELGLERRALYVERATMANQRIVPLERVEPMASPYFSLIVVPGDKWQ 244
Cdd:PRK05990 161 VLPEEELRRRLADADAAVIMKLGRNLDKVRRVLAALGLLDRALYVERATMANQRIVPLAEVDPMASPYFSLILVPGEKWQ 240

                 .
gi 15598100  245 G 245
Cdd:PRK05990 241 G 241
CobF COG2243
Precorrin-2 methylase [Coenzyme transport and metabolism]; Precorrin-2 methylase is part of ...
6-239 5.98e-103

Precorrin-2 methylase [Coenzyme transport and metabolism]; Precorrin-2 methylase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 441844 [Multi-domain]  Cd Length: 229  Bit Score: 298.17  E-value: 5.98e-103
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100   6 KGRLLGLGVGPGDPELITLKALRLLRAAPVVGYFVA-KGKKGNAFGIIEAHLDQAQVrLPLVYPVTTEKlepplcyeTII 84
Cdd:COG2243   2 MGKLYGVGVGPGDPELLTLKAVRALREADVIAYPAKgAGKASLAREIVAPYLPPARI-VELVFPMTTDY--------EAL 72
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  85 SDFYDTAAEQLAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLATR-YESEVVPGVCSMLGGAAVLGAPLVYRNQSLSVLS 163
Cdd:COG2243  73 VAAWDEAAARIAEELEAGRDVAFLTEGDPSLYSTFMYLLERLRERgFEVEVIPGITSFSAAAAALGIPLAEGDEPLTVLP 152
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15598100 164 GVLPEEELRRRLADADAAVVMKLGRNFDKVRRVLVELGLERRALYVERATMANQRIVP-LERVEPMASPYFSLIVVP 239
Cdd:COG2243 153 GTLLEEELERALDDFDTVVIMKVGRNFPKVREALEEAGLLDRAWYVERAGMPDERIVPgLAEVDIEEAPYFSLILVR 229
Precorrin_2_C20_MT cd11645
Precorrin-2 C20-methyltransferase, also named CobI or CbiL; Precorrin-2 C20-methyltransferase ...
13-239 2.76e-82

Precorrin-2 C20-methyltransferase, also named CobI or CbiL; Precorrin-2 C20-methyltransferase (also known as S-adenosyl-L-methionine--precorrin-2 methyltransferase) participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. Precorrin-2 C20-methyltransferase catalyzes methylation at the C-20 position of a cyclic tetrapyrrole ring of precorrin-2 using S-adenosylmethionine as a methyl group source to produce precorrin-3A. In the anaerobic pathway, cobalt is inserted into precorrin-2 by CbiK to generate cobalt-precorrin-2, which is the substrate for CbiL, a C20 methyltransferase. In Clostridium difficile, CbiK and CbiL are fused into a bifunctional enzyme. In the aerobic pathway, the precorrin-2 C20-methyltransferase is named CobI. This family includes CbiL and CobI precorrin-2 C20-methyltransferases, both as stand-alone enzymes and when CbiL forms part of a bifunctional enzyme.


Pssm-ID: 381172 [Multi-domain]  Cd Length: 223  Bit Score: 245.50  E-value: 2.76e-82
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  13 GVGPGDPELITLKALRLLRAAPVVGYFVAKGKKGN-AFGIIEAHLDQAQVRLPLVYPVTTEKlepplcyeTIISDFYDTA 91
Cdd:cd11645   2 GVGPGDPELLTLKAVRILKEADVIFVPVSKGGEGSaALIIAAALLIPDKEIIPLEFPMTKDR--------EELEEAWDEA 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  92 AEQLAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLATR-YESEVVPGVCSMLGGAAVLGAPLVYRNQSLSVLSGVLPEEE 170
Cdd:cd11645  74 AEEIAEELKEGKDVAFLTLGDPSLYSTFSYLLERLRAPgVEVEIIPGITSFSAAAARLGIPLAEGDESLAILPATYDEEE 153
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100 171 LRRRLADADAAVVMKLGRNFDKVRRVLVELGLERRALYVERATMANQRIVP-LERVEPMASPYFSLIVVP 239
Cdd:cd11645 154 LEKALENFDTVVLMKVGRNLEEIKELLEELGLLDKAVYVERCGMEGERIYTdLEELKEEKLPYFSLIIVK 223
cobI_cbiL TIGR01467
precorrin-2 C(20)-methyltransferase; This model represents precorrin-2 C(20)-methyltransferase, ...
7-240 2.54e-75

precorrin-2 C(20)-methyltransferase; This model represents precorrin-2 C(20)-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 273642 [Multi-domain]  Cd Length: 230  Bit Score: 227.96  E-value: 2.54e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100     7 GRLLGLGVGPGDPELITLKALRLLRAAPVVGYFV-AKGKKGNAFGIIEAHLDQAQVR-LPLVYPVTTEKlepplcyeTII 84
Cdd:TIGR01467   1 GKLYGVGVGPGDPELITVKALEALRSADVIAVPAsKKGRESLARKIVEDYLKPNDTRiLELVFPMTKDR--------DEL 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100    85 SDFYDTAAEQLAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLA-TRYESEVVPGVCSMLGGAAVLGAPLVYRNQSLSVLS 163
Cdd:TIGR01467  73 EKAWDEAAEAVAAELEEGRDVAFLTLGDPSLYSTFSYLLQRLQgMGIEVEVVPGITSFAACASAAGLPLVEGDESLAILP 152
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15598100   164 GVLPEEELRRRLADADAAVVMKLGRNFDKVRRVLVELGLERRALYVERATMANQRIVPLER-VEPMASPYFSLIVVPG 240
Cdd:TIGR01467 153 ATAGEAELEKALAEFDTVVLMKVGRNLPQIKEALAKLGRLDAAVVVERATMPDEKIVDLVReAIDDALPYFSTILVRR 230
PRK05948 PRK05948
precorrin-2 C(20)-methyltransferase;
7-238 1.03e-57

precorrin-2 C(20)-methyltransferase;


Pssm-ID: 180320  Cd Length: 238  Bit Score: 183.69  E-value: 1.03e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100    7 GRLLGLGVGPGDPELITLKALRLLRAAPVVGYFV-AKGKKGNAFGIIEAHLDQAQVRLPLVYPVTTEklepplcyETIIS 85
Cdd:PRK05948   4 GTLYGISVGPGDPELITLKGLRLLQSAPVVAFPAgLAGQPGLAEQIIAPWLSPQQIKLPLYFPYVQD--------EEQLE 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100   86 DFYDTAAEQLAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLATRYES---EVVPGVCSMLGGAAVLGAPLVYRNQSLSVL 162
Cdd:PRK05948  76 QAWQAAADQVWHYLEQGEDVAFACEGDVSFYSTFTYLAQTLQELYPQvaiQTIPGVCSPLAAAAALGIPLTLGSQRLAIL 155
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15598100  163 SGVLPEEELRRRLADADAAVVMKLGRNFDKVRRVLVELGLERRALYVERATMANQRIV-PLERVEPMASPYFSLIVV 238
Cdd:PRK05948 156 PALYHLEELEQALTWADVVVLMKVSSVYPQVWQWLKARNLLEQASLVERATTPEQVIYrNLEDYPDLRLPYFSLLII 232
PRK05576 PRK05576
cobalt-factor II C(20)-methyltransferase;
7-238 2.08e-43

cobalt-factor II C(20)-methyltransferase;


Pssm-ID: 235512 [Multi-domain]  Cd Length: 229  Bit Score: 146.60  E-value: 2.08e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100    7 GRLLGLGVGPGDPELITLKALRLLRAAPVVgyFVAKGKKGN---AFGIIEAHLD-QAQVRLpLVYPVTTEKLEPPLCYET 82
Cdd:PRK05576   2 GKLYGIGLGPGDPELLTVKAARILEEADVV--YAPASRKGGgslALNIVRPYLKeETEIVE-LHFPMSKDEEEKEAVWKE 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100   83 IisdfydtaAEQLAAHLDAGRDVAVICEGDPFFYGSYMYLHDRL-ATRYESEVVPGVCSMLGGAAVLGAPLVYRNQSLSV 161
Cdd:PRK05576  79 N--------AEEIAAEAEEGKNVAFITLGDPNLYSTFSHLLEYLkCHDIEVETVPGISSFTAIASRAGVPLAMGDESLAI 150
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15598100  162 LSGVlPEEELRRRLADADAAVVMKLGRNFDKVRRVLVELGLErrALYVERATMANQRIVPLERVEPMASPYFSLIVV 238
Cdd:PRK05576 151 IPAT-REALIEQALTDFDSVVLMKVYKNFALIEELLEEGYLD--ALYVRRAYMEGEQILRRLEEILDDLDYFSTIIA 224
TP_methylase pfam00590
Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of ...
8-220 7.11e-43

Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of diverse substrates. This family includes a related group of bacterial proteins of unknown function. This family includes the methylase Dipthine synthase.


Pssm-ID: 425769 [Multi-domain]  Cd Length: 209  Bit Score: 144.41  E-value: 7.11e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100     8 RLLGLGVGPGDPELITLKALRLLRAAPVVgyfvaKGKKGNAFGIIEAHLDQAqvrlplVYPVTTEKLEPplcyetiISDF 87
Cdd:pfam00590   1 KLYLVGVGPGDPDLLTLRALRALKEADVV-----LGDDSRALEILLDLLPED------LYFPMTEDKEP-------LEEA 62
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100    88 YDTAAEQLAAHLDAGRDVAVICEGDPFFYGSYMYLHDRL-ATRYESEVVPGVCSMLGGAAVLGAPLVYRNQSLSVLS--- 163
Cdd:pfam00590  63 YEEIAEALAAALRAGKDVARLVSGDPLVYGTGSYLVEALrAAGIDVEVVPGVSSAQAAAARLGIPLTEGGEVLSVLFlpg 142
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15598100   164 -GVLPEEELRRRLADADAAVVMKLGRNFDKVRRVLVEL-GLERRALYVERATMANQRIV 220
Cdd:pfam00590 143 lARIELRLLEALLANGDTVVLLYGPRRLAELAELLLELyPDTTPVAVVERAGTPDEKVV 201
SUMT cd11642
Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen ...
13-238 1.47e-19

Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT); SUMT is an enzyme of the cobalamin and siroheme biosynthetic pathway. It catalyzes the first of three steps leading to the formation of siroheme from uroporphyrinogen III; it transfers two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. Precorrin-2 is also a precursor for the biosynthesis of vitamin B12, coenzyme F430, siroheme and heme d1. This family includes proteins in which the SUMT domain is fused to other functional domains, such as to a uroporphyrinogen-III synthase domain to form bifunctional uroporphyrinogen-III methylase/uroporphyrinogen-III synthase, or to a dual function dehydrogenase-chelatase domain, as in the case of the multifunctional S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase/dehydrogenase/ferrochelatase CysG, which catalyzes all three steps that transform uroporphyrinogen III into siroheme.


Pssm-ID: 381169  Cd Length: 228  Bit Score: 84.03  E-value: 1.47e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  13 GVGPGDPELITLKALRLLRAAPVVGY--FVAKGkkgnafgIIEAHLDQAQvrlpLVYpVTTEKLEPPLCYETIIsdfydt 90
Cdd:cd11642   2 GAGPGDPDLLTLKALRALQQADVVLYdrLVSPE-------ILALAPPGAE----LIY-VGKRPGRHSVPQEEIN------ 63
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  91 aaEQLAAHLDAGRDVAVICEGDPFFYGS----YMYLHDRlatRYESEVVPGVCSMLGGAAVLGAPLVYR--NQSLSVLSG 164
Cdd:cd11642  64 --ELLVELAREGKRVVRLKGGDPFVFGRggeeIEALREA---GIPFEVVPGITSAIAAAAYAGIPLTHRgvASSVTFVTG 138
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100 165 VLPEEELR---RRLADADAAVVMKLG-RNFDKVRRVLVELGL--ERRALYVERATMANQR--------IVPLERVEPMAS 230
Cdd:cd11642 139 HEADGKLPdddAALARPGGTLVIYMGvSNLEEIAERLIAAGLppDTPVAIVENATTPDQRvvvgtlaeLAEKAAEAGIRS 218

                ....*...
gi 15598100 231 PyfSLIVV 238
Cdd:cd11642 219 P--ALIVV 224
Precorrin-4_C11-MT cd11641
Precorrin-4 C11-methyltransferase (CbiF/CobM); Precorrin-4 C11-methyltransferase participates ...
13-220 7.49e-18

Precorrin-4 C11-methyltransferase (CbiF/CobM); Precorrin-4 C11-methyltransferase participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. In the aerobic pathway, CobM catalyzes the methylation of precorrin-4 at C-11 to yield precorrin-5. In the anaerobic pathway, CibF catalyzes the methylation of cobalt-precorrin-4 to cobalt-precorrin-5. Both CibF and CobM, which are homologous, are included in this model. There are about 30 enzymes involved in vitamin B12 synthetic pathway. The enzymes involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Most of the enzymes are shared in both pathways and several of these enzymes are pathway-specific.


Pssm-ID: 381168 [Multi-domain]  Cd Length: 225  Bit Score: 79.36  E-value: 7.49e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  13 GVGPGDPELITLKALRLLRAAPVVGY---FVAKGkkgnafgIIEAHLDQAQVrlplvypvtteklepplcyetiisdfYD 89
Cdd:cd11641   2 GAGPGDPELITVKGARLLEEADVVIYagsLVPPE-------LLAYAKPGAEI--------------------------VD 48
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  90 TAA-------EQLAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLATR-YESEVVPGVCSMLGGAAVLGAPLVYRNQSLSV 161
Cdd:cd11641  49 SAGmtleeiiEVMREAAREGKDVVRLHTGDPSLYGAIREQIDALDKLgIPYEVVPGVSSFFAAAAALGTELTLPEVSQTV 128
                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15598100 162 ----LSG--VLPEEELRRRLADADAAVVMKLG-RNFDKVRRVLVELGL--ERRALYVERATMANQRIV 220
Cdd:cd11641 129 iltrLEGrtPVPEGESLRELAKHGATLAIFLSaALIEEVVEELLAGGYppDTPVAVVYKASWPDEKII 196
CbiE TIGR02467
precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; This model recognizes ...
12-238 2.09e-17

precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.


Pssm-ID: 274146 [Multi-domain]  Cd Length: 204  Bit Score: 77.74  E-value: 2.09e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100    12 LGVGPGDPELITLKALRLLRAAP-VVGYfvakgkkGNAFGIIEAHLDQAQVRLPLVYPvttekLEPPLcyetiisdfydt 90
Cdd:TIGR02467   2 VGIGPGGPELLTPAAIEAIRKADlVVGG-------ERHLELLAELIGEKREIILTYKD-----LDELL------------ 57
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100    91 aaEQLAAhLDAGRDVAVICEGDPFFYGSYMYLHDRLATRyESEVVPGVCSMLGGAAVLGAPLvyrnQSLSVLS--GVLPE 168
Cdd:TIGR02467  58 --EFIAA-TRKEKRVVVLASGDPLFYGIGRTLAERLGKE-RLEIIPGISSVQYAFARLGLPW----QDAVVISlhGRELD 129
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15598100   169 EELRRRLADADAAVVMKLGRNF-DKVRRVLVELGLERRA-LYV-ERATMANQRIVPLERVEPM-ASPYFSLIVV 238
Cdd:TIGR02467 130 ELLLALLRGHRKVAVLTDPRNGpAEIARELIELGIGGSYeLTVgENLGYEDERITEGTLEEIAaAQFDFSPLLV 203
TP_methylase cd09815
S-AdoMet-dependent tetrapyrrole methylases; This superfamily uses S-AdoMet ...
12-219 1.28e-16

S-AdoMet-dependent tetrapyrrole methylases; This superfamily uses S-AdoMet (S-adenosyl-L-methionine or SAM) in the methylation of diverse substrates. Most members catalyze various methylation steps in cobalamin (vitamin B12) biosynthesis. There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. The enzymes involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Most of the enzymes are shared by both pathways and a few enzymes are pathway-specific. Diphthine synthase and ribosomal RNA small subunit methyltransferase I (RsmI) are two superfamily members that are not involved in cobalamin biosynthesis. Diphthine synthase participates in the posttranslational modification of a specific histidine residue in elongation factor 2 (EF-2) of eukaryotes and archaea to diphthamide. RsmI catalyzes the 2-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. Other superfamily members not involved in cobalamin biosynthesis include the N-terminal tetrapyrrole methylase domain of Bacillus subtilis YabN whose specific function is unknown, and Omphalotus olearius omphalotin methyltransferase which catalyzes the automethylation of its own C-terminus; this C terminus is subsequently released and macrocyclized to give Omphalotin A, a potent nematicide.


Pssm-ID: 381167 [Multi-domain]  Cd Length: 219  Bit Score: 75.89  E-value: 1.28e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  12 LGVGPGDPELITLKALRLLRAAPVVGYFVaKGKKGNAFGIIEAHLDQAQvrlplvypvtteklepplCYETIISDFYDTA 91
Cdd:cd09815   1 VGVGPGDPDLLTLRALEILRAADVVVAED-KDSKLLSLVLRAILKDGKR------------------IYDLHDPNVEEEM 61
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  92 AEQLAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLATR-YESEVVPGVCSMLGGAAVLGAPLvyrNQSLSVLSGVLPEEE 170
Cdd:cd09815  62 AELLLEEARQGKDVAFLSPGDPGVAGTGAELVERAEREgVEVKVIPGVSAADAAAAALGIDL---GESFLFVTASDLLEN 138
                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 15598100 171 LRRRLADADAAVV------MKLGRNFDKVRRVLVELGLE-RRALYVERATMANQRI 219
Cdd:cd09815 139 PRLLVLKALAKERrhlvlfLDGHRFLKALERLLKELGEDdTPVVLVANAGSEGEVI 194
CysG COG0007
Uroporphyrinogen-III methylase (siroheme synthase) [Coenzyme transport and metabolism]; ...
13-238 1.29e-16

Uroporphyrinogen-III methylase (siroheme synthase) [Coenzyme transport and metabolism]; Uroporphyrinogen-III methylase (siroheme synthase) is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 439778 [Multi-domain]  Cd Length: 245  Bit Score: 76.27  E-value: 1.29e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  13 GVGPGDPELITLKALRLLRAAPVVGY--FVAkgkkgnafgiiEAHLDQAQVRLPLVYpVTTEKLEPPLCYETIIsdfydt 90
Cdd:COG0007   8 GAGPGDPDLLTLKALRALQQADVVLYdrLVS-----------PEILALARPDAELIY-VGKRGGRHSLPQEEIN------ 69
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  91 aaEQLAAHLDAGRDVAVICEGDPFFYGS----YMYLHDRlatRYESEVVPGVCSMLGGAAVLGAPLVYR--NQSLSVLSG 164
Cdd:COG0007  70 --ALLVELARAGKRVVRLKGGDPFVFGRggeeAEALAAA---GIPFEVVPGITAAIAAPAYAGIPLTHRgvASSVTFVTG 144
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100 165 VLPEEELR---RRLADADAAVVMKLG-RNFDKVRRVLVELGL--ERRALYVERATMANQR--------IVPLERVEPMAS 230
Cdd:COG0007 145 HEKDGKLDldwAALARPGGTLVIYMGvKNLPEIAAALIAAGRspDTPVAVIENGTTPDQRvvtgtlatLAELAAEAGLKS 224

                ....*...
gi 15598100 231 PyfSLIVV 238
Cdd:COG0007 225 P--ALIVV 230
CobM COG2875
Precorrin-4 methylase [Coenzyme transport and metabolism]; Precorrin-4 methylase is part of ...
13-152 4.84e-15

Precorrin-4 methylase [Coenzyme transport and metabolism]; Precorrin-4 methylase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 442122 [Multi-domain]  Cd Length: 256  Bit Score: 72.40  E-value: 4.84e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  13 GVGPGDPELITLKALRLLRAAPVVGY---FVAKgkkgnafGIIEAHLDQAQVrlplvypvtteklepplcyetiisdfYD 89
Cdd:COG2875   9 GAGPGDPDLITVKGRRLLEEADVVLYagsLVPP-------ELLAYCKPGAEI--------------------------VD 55
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15598100  90 TAA-------EQLAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLATR-YESEVVPGVCSMLGGAAVLGAPL 152
Cdd:COG2875  56 SASmtleeiiALMKEAAAEGKDVVRLHSGDPSLYGAIAEQMRRLDALgIPYEVVPGVSAFAAAAAALGREL 126
Precorrin_3B_C17_MT cd11646
Precorrin-3B C(17)-methyltransferase (also named CobJ or CbiH); Precorrin-3B C(17) ...
13-242 1.08e-14

Precorrin-3B C(17)-methyltransferase (also named CobJ or CbiH); Precorrin-3B C(17)-methyltransferase participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. This model includes CobJ of the aerobic pathway and CbiH of the anaerobic pathway, both as stand-alone enzymes and when CobJ or CbiH form part of bifunctional enzymes, such as in Mycobacterium tuberculosis CobIJ where CobJ fuses with a precorrin-2 C(20)-methyltransferase domain, or Bacillus megaterium CbiH60, where CbiH is fused to a nitrite and sulfite reductase-like domain. In the aerobic pathway, once CobG has generated precorrin-3b, CobJ catalyzes the methylation of precorrin-3b at C-17 to form precorrin-4 (the extruded methylated C-20 fragment is left attached as an acyl group at C-1). In the corresponding anaerobic pathway, CbiH carries out this ring contraction, using cobalt-precorrin-3b as a substrate to generate a tetramethylated delta-lactone.


Pssm-ID: 381173 [Multi-domain]  Cd Length: 238  Bit Score: 70.91  E-value: 1.08e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  13 GVGPGDPELITLKALRLLRAAP-VVGYfvakgkkgnafgiiEAHLDQAQVRLP----LVYPVTTEKlepplcyetiisdf 87
Cdd:cd11646   5 GIGPGSADLMTPRAREALEEADvIVGY--------------KTYLDLIEDLLPgkevISSGMGEEV-------------- 56
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  88 yDTAAEQLAAHLdAGRDVAVICEGDPFFYG--SYMY-LHDRLATRYESEVVPGVCSMLGGAAVLGAPLVYRNQSLSvLSG 164
Cdd:cd11646  57 -ERAREALELAL-EGKRVALVSSGDPGIYGmaGLVLeLLDERWDDIEVEVVPGITAALAAAALLGAPLGHDFAVIS-LSD 133
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100 165 VL-PEEELRRRL---ADADAAVV------MKLGRNFDKVRRVLVE-LGLERRALYVERATMANQ--RIVPLERVEP---- 227
Cdd:cd11646 134 LLtPWEVIEKRLraaAEADFVIAlynprsKKRPWQLEKALEILLEhRPPDTPVGIVRNAGREGEevTITTLGELDPedvd 213
                       250
                ....*....|....*
gi 15598100 228 MaspyFSLIVVPGDK 242
Cdd:cd11646 214 M----FTTVIIGNSQ 224
PRK05787 PRK05787
cobalt-precorrin-7 (C(5))-methyltransferase;
11-239 1.70e-14

cobalt-precorrin-7 (C(5))-methyltransferase;


Pssm-ID: 235609 [Multi-domain]  Cd Length: 210  Bit Score: 69.90  E-value: 1.70e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100   11 GLGVGPGDPELITLKALRLLRAAPVVgyfvakgkkgnaFGiIEAHLDQAQvrlplvyPVTTEKLEPPLCYetiisdfYDT 90
Cdd:PRK05787   4 IVGIGPGDPEYLTLKALEAIRKADVV------------VG-SKRVLELFP-------ELIDGEAFVLTAG-------LRD 56
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100   91 AAEQLAAHlDAGRDVAVICEGDPFFYGSYMYLHDRLATRYESEVVPGVCSMLGGAAVLGAPLvyrNQsLSVLS--GVLPE 168
Cdd:PRK05787  57 LLEWLELA-AKGKNVVVLSTGDPLFSGLGKLLKVRRAVAEDVEVIPGISSVQYAAARLGIDM---ND-VVFTTshGRGPN 131
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15598100  169 EELRRRLADADAAVVMkLGRNFDKVRRV---LVELG-LERRALYVERATMANQRIV--PLERVEPMASPYFSLIVVP 239
Cdd:PRK05787 132 FEELEDLLKNGRKVIM-LPDPRFGPKEIaaeLLERGkLERRIVVGENLSYPDERIHklTLSEIEPLEFSDMSVVVIL 207
CobL COG2241
Precorrin-6B methylase 1 [Coenzyme transport and metabolism]; Precorrin-6B methylase 1 is part ...
1-238 3.35e-14

Precorrin-6B methylase 1 [Coenzyme transport and metabolism]; Precorrin-6B methylase 1 is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 441842 [Multi-domain]  Cd Length: 207  Bit Score: 69.02  E-value: 3.35e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100   1 MMSVVkgrllglGVGPGDPELITLKALRLLRAAPVV-GYfvakgkkgnafgiiEAHLDqaqvrlpLVYPVTTEKLEpplc 79
Cdd:COG2241   3 WLTVV-------GIGPGGPDGLTPAAREAIAEADVVvGG--------------KRHLE-------LFPDLGAERIV---- 50
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  80 yetIISDFyDTAAEQLAAHLdAGRDVAVICEGDPFFYGsymyLHDRLATRYESE---VVPGVCSMLGGAAVLGAPLvyrn 156
Cdd:COG2241  51 ---WPSPL-SELLEELLALL-RGRRVVVLASGDPLFYG----IGATLARHLPAEevrVIPGISSLQLAAARLGWPW---- 117
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100 157 QSLSVLSgvL---PEEELRRRLADADAAVVmkLGRNFD---KVRRVLVELGLERRALYV-ERATMANQRIVPLERVEPMA 229
Cdd:COG2241 118 QDAAVVS--LhgrPLERLLPALAPGRRVLV--LTDDGNtpaAIARLLLERGFGDSRLTVlENLGGPDERITRGTAEELAD 193

                ....*....
gi 15598100 230 SPYFSLIVV 238
Cdd:COG2241 194 ADFSDLNVV 202
Precorrin-6Y-MT cd11644
Precorrin-6Y methyltransferase (also named CbiE); CbiE (precorrin-6Y methyltransferase, also ...
13-238 6.09e-14

Precorrin-6Y methyltransferase (also named CbiE); CbiE (precorrin-6Y methyltransferase, also known as cobalt-precorrin-7 C(5)-methyltransferase, also known as cobalt-precorrin-6Y C(5)-methyltransferase) catalyzes the methylation of C-5 in cobalt-precorrin-7 to form cobalt-precorrin-8. It participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. CbiE functions in the anaerobic pathway, it is a subunit of precorrin-6Y C5,15-methyltransferase, a bifunctional enzyme: cobalt-precorrin-7 C(5)-methyltransferase (CbiE)/cobalt-precorrin-6B C(15)-methyltransferase (decarboxylating) (CbiT), that catalyzes two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. CbiE and CbiT can be found fused (CbiET, also called CobL), or on separate protein chains (CbiE and CbiT). In the aerobic pathway, a single enzyme called CobL catalyzes the methylations at C-5 and C-15, and the decarboxylation of the C-12 acetate side chain of precorrin-6B.


Pssm-ID: 381171 [Multi-domain]  Cd Length: 198  Bit Score: 68.29  E-value: 6.09e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  13 GVGPGDPELITLKALRLLRAAPVVgyFVAKgkkgnafgiieAHLDQAQVRLPLVYPVTTEKLEpplcyetiisdfydtaa 92
Cdd:cd11644   2 GIGPGGPEYLTPEAREAIEEADVV--IGAK-----------RLLELFPDLGAEKIPLPSEDIA----------------- 51
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  93 EQLAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLAtRYESEVVPGVCSMLGGAAVLGAPLvyrnQSLSVLS--GVlPEEE 170
Cdd:cd11644  52 ELLEEIAEAGKRVVVLASGDPGFYGIGKTLLRRLG-GEEVEVIPGISSVQLAAARLGLPW----EDARLVSlhGR-DLEN 125
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15598100 171 LRRRLADADAAVVMkLGRNFD--KVRRVLVELGLERRALYV-ERATMANQRIV--PLERVEPMASPYFSLIVV 238
Cdd:cd11644 126 LRRALRRGRKVFVL-TDGKNTpaEIARLLLERGLGDSRVTVgENLGYPDERITegTAEELAEEEFSDLNVVLI 197
cobM_cbiF TIGR01465
precorrin-4 C11-methyltransferase; This model represents precorrin-4 C11-methyltransferase, ...
13-220 9.84e-14

precorrin-4 C11-methyltransferase; This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 200107  Cd Length: 247  Bit Score: 68.51  E-value: 9.84e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100    13 GVGPGDPELITLKALRLLRAAPVVGYFVAkgkkgnafgiieahldqaqvrlpLVYPVTTEKLEPPlcyetiiSDFYDTAA 92
Cdd:TIGR01465   5 GAGPGDPDLITVKGRKLIESADVILYAGS-----------------------LVPPELLAHCRPG-------AEVVNSAG 54
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100    93 -------EQLAAHLDAGRDVAVICEGDPFFYGSY---MYLHDRLATRYesEVVPGVCSMLGGAAVLGAPLVYRNQSLSV- 161
Cdd:TIGR01465  55 msleeivDIMSDAHREGKDVARLHSGDPSIYGAIaeqMRLLEALGIPY--EVVPGVSSFFAAAAALGAELTVPEVSQTVi 132
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15598100   162 ---LSG--VLPEEELRRRLADADAAVVMKLG-RNFDKVRRVLVELGL--ERRALYVERATMANQRIV 220
Cdd:TIGR01465 133 ltrASGrtPMPEGEKLADLAKHGATMAIFLSaHILDKVVKELIEHGYseDTPVAVVYRATWPDEKIV 199
PLN02625 PLN02625
uroporphyrin-III C-methyltransferase
7-220 1.15e-13

uroporphyrin-III C-methyltransferase


Pssm-ID: 178232 [Multi-domain]  Cd Length: 263  Bit Score: 68.50  E-value: 1.15e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100    7 GRLLGLGVGPGDPELITLKALRLLRAAPVVGY--FVAkgkkgnafgiiEAHLDQAQVRLPLVYPVTTeklepPLCYETII 84
Cdd:PLN02625  15 GNVFLVGTGPGDPDLLTLKALRLLQTADVVLYdrLVS-----------PDILDLVPPGAELLYVGKR-----GGYHSRTQ 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100   85 SDFYdtaaEQLAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLATR-YESEVVPGVCSMLGGAAVLGAPLVYR--NQSLSV 161
Cdd:PLN02625  79 EEIH----ELLLSFAEAGKTVVRLKGGDPLVFGRGGEEMDALRKNgIPVTVVPGITAAIGAPAELGIPLTHRgvATSVRF 154
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15598100  162 LSGVLPEEELRRRLADADAA------VVMKLGRNFDKVRRVLVELGLERR--ALYVERATMANQRIV 220
Cdd:PLN02625 155 LTGHDREGGTDPLDVAEAAAdpdttlVVYMGLGTLPSLAEKLIAAGLPPDtpAAAVERGTTPEQRVV 221
CobJ COG1010
Precorrin-3B methylase [Coenzyme transport and metabolism]; Precorrin-3B methylase is part of ...
6-183 4.94e-13

Precorrin-3B methylase [Coenzyme transport and metabolism]; Precorrin-3B methylase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 440634  Cd Length: 250  Bit Score: 66.63  E-value: 4.94e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100   6 KGRLLGLGVGPGDPELITLKALRLLRAAP-VVGYFVakgkkgnafgiieaHLDQAQVRLPlvypvTTEKLEPPLCYETii 84
Cdd:COG1010   3 RGKLYVVGLGPGSAELMTPRARAALAEADvVVGYGT--------------YLDLIPPLLP-----GKEVHASGMREEV-- 61
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  85 sdfyDTAAE--QLAAhldAGRDVAVICEGDPFFYG--SYMY---LHDRLATRYESEVVPGVCSMLGGAAVLGAPLVYRNQ 157
Cdd:COG1010  62 ----ERAREalELAA---EGKTVAVVSSGDPGVYGmaGLVLevlEEGGAWRDVEVEVVPGITAAQAAAARLGAPLGHDFC 134
                       170       180       190
                ....*....|....*....|....*....|
gi 15598100 158 SLSvLSGVL-PEEELRRRL---ADADAAVV 183
Cdd:COG1010 135 VIS-LSDLLtPWEVIEKRLraaAEADFVIA 163
PRK06136 PRK06136
uroporphyrinogen-III C-methyltransferase;
13-220 1.54e-11

uroporphyrinogen-III C-methyltransferase;


Pssm-ID: 235711  Cd Length: 249  Bit Score: 62.54  E-value: 1.54e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100   13 GVGPGDPELITLKALRLLRAAPVVGY-----------------FVAKGKKGNafgiiEAHLDQAQVrlplvypvttekle 75
Cdd:PRK06136   9 GAGPGDPDLITLKGVRLLEQADVVLYddlvspeilayakpdaeLIYVGKRAG-----RHSTKQEEI-------------- 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100   76 pplcyetiisdfydtaAEQLAAHLDAGRDVAVICEGDPFFYGsymylhdR-----LATR---YESEVVPGVCSMLGGAAV 147
Cdd:PRK06136  70 ----------------NRLLVDYARKGKVVVRLKGGDPFVFG-------RggeelEALEaagIPYEVVPGITAAIAAAAY 126
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  148 LGAPLVYRNQSLSVL-------SGVLPEEELRRRLADADAAVVMKLG-RNFDKVRRVLVELGL--ERRALYVERATMANQ 217
Cdd:PRK06136 127 AGIPLTHRGVARSVTfvtgheaAGKLEPEVNWSALADGADTLVIYMGvRNLPYIAAQLLAAGRapDTPVAIIENGTTPEQ 206

                 ...
gi 15598100  218 RIV 220
Cdd:PRK06136 207 RVV 209
TP_methylase cd11724
uncharacterized family of the tetrapyrrole methylase superfamily; Members of this superfamily ...
13-197 2.03e-11

uncharacterized family of the tetrapyrrole methylase superfamily; Members of this superfamily use S-AdoMet (S-adenosyl-L-methionine or SAM) in the methylation of diverse substrates. Most members catalyze various methylation steps in cobalamin (vitamin B12) biosynthesis. There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. The enzymes involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Most of the enzymes are shared by both pathways and a few enzymes are pathway-specific. Diphthine synthase and Ribosomal RNA small subunit methyltransferase I (RsmI) are two superfamily members that are not involved in cobalamin biosynthesis. Diphthine synthase participates in the posttranslational modification of a specific histidine residue in elongation factor 2 (EF-2) of eukaryotes and archaea to diphthamide. RsmI catalyzes the 2-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. Other superfamily members not involved in cobalamin biosynthesis include the N-terminal tetrapyrrole methylase domain of Bacillus subtilis YabN whose specific function is unknown, and Omphalotus olearius omphalotin methyltransferase which catalyzes the automethylation of its own C-terminus; this C terminus is subsequently released and macrocyclized to give Omphalotin A, a potent nematicide.


Pssm-ID: 381178 [Multi-domain]  Cd Length: 243  Bit Score: 61.80  E-value: 2.03e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  13 GVGPGDPELITLKALRLLRAAPVVgyfVAKGKKGNAFGiieAHLDQAQVRLPLVYPVTTEKLEP-PLCYETIISDFYDTA 91
Cdd:cd11724   6 GVGPGDPDLITLRALKAIKKADVV---FAPPDLRKRFA---EYLAGKEVLDDPHGLFTYYGKKCsPLEEAEKECEELEKQ 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  92 AEQLAAH----LDAGRDVAVICEGDPFFYGSYMYLHDRLATRyESEVVPGVCSMLGGAAVLGAPLV--YRNQSLSVLSGV 165
Cdd:cd11724  80 RAEIVQKireaLAQGKNVALLDSGDPTIYGPWIWYLEEFADL-NPEVIPGVSSFNAANAALKRSLTggGDSRSVILTAPF 158
                       170       180       190
                ....*....|....*....|....*....|....*.
gi 15598100 166 LPEEE--LRRRLADADAAVV--MKLgRNFDKVRRVL 197
Cdd:cd11724 159 ALKENedLLEDLAATGDTLVifMMR-LDLDELVEKL 193
cobJ_cbiH TIGR01466
precorrin-3B C17-methyltransferase; This model represents precorrin-3B C17-methyltransferase, ...
13-183 8.89e-11

precorrin-3B C17-methyltransferase; This model represents precorrin-3B C17-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, EC 2.1.1.133). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products. Members of this family may appear as fusion proteins with other enzymes of cobalamin biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 273641 [Multi-domain]  Cd Length: 239  Bit Score: 60.01  E-value: 8.89e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100    13 GVGPGDPELITLKALRLLRAAPV-VGYfvakgkkGNAFGIIEAHLDQAQVrlplvypVTTeklepPLCYETiisdfyDTA 91
Cdd:TIGR01466   5 GIGPGAEELMTPEAKEALAEADViVGY-------KTYLDLIEDLIPGKEV-------VTS-----GMREEI------ARA 59
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100    92 AEQLAAHLdAGRDVAVICEGDPFFYG----SYMYLhDRLATRYESEVVPGVCSMLGGAAVLGAPLVYRNQSLSvLSGVL- 166
Cdd:TIGR01466  60 ELAIELAA-EGRTVALVSSGDPGIYGmaalVFEAL-EKKGAEVDIEVIPGITAASAAASLLGAPLGHDFCVIS-LSDLLt 136
                         170       180
                  ....*....|....*....|
gi 15598100   167 PEEELRRRL---ADADAAVV 183
Cdd:TIGR01466 137 PWPEIEKRLraaAEADFVIA 156
PRK05765 PRK05765
precorrin-3B C17-methyltransferase; Provisional
6-209 5.90e-10

precorrin-3B C17-methyltransferase; Provisional


Pssm-ID: 235597  Cd Length: 246  Bit Score: 57.87  E-value: 5.90e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100    6 KGRLLGLGVGPGDPELITLKALRLLRAAPV-VGYfvakgkkGNAFGIIEAHLDQAQVrlplvypVTTEKLEPPLCYETII 84
Cdd:PRK05765   1 MGKLYIVGIGPGSKEQRTIKAQEAIEKSNViIGY-------NTYLRLISDLLDGKEV-------IGARMKEEIFRANTAI 66
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100   85 SdfydTAAEqlaahldaGRDVAVICEGDPFFYGSYMYLHDRLATR---YESEVVPGVCSMLGGAAVLGAPLVYRNQSLSV 161
Cdd:PRK05765  67 E----KALE--------GNIVALVSSGDPQVYGMAGLVFELISRRkldVDVEVIPGVTAALAAAARLGSPLSLDFVVISL 134
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 15598100  162 LSGVLPEEE-LRRRLADADAAVVMKLGRNFDKvrrvlvelGLERRALYV 209
Cdd:PRK05765 135 SDLLIPREEiLHRVTKAAEADFVIVFYNPINE--------NLLIEVMDI 175
cbiF PRK15473
cobalt-precorrin-4 methyltransferase;
12-220 2.16e-08

cobalt-precorrin-4 methyltransferase;


Pssm-ID: 185370  Cd Length: 257  Bit Score: 53.22  E-value: 2.16e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100   12 LGVGPGDPELITLKALRLLRAAPVVGYfvakgkkgnAFGIIeahldqaqvrlplvypvTTEKLE--PPLCyetiisDFYD 89
Cdd:PRK15473  13 VGAGPGDKELITLKGYRLLQQAQVVIY---------AGSLI-----------------NTELLDycPAQA------ECHD 60
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100   90 TAAEQLAAHLD-------AGRDVAVICEGDPFFYGSYMYLHDRLATR-YESEVVPGVCSMLGGAAVLGA----PLVYRNQ 157
Cdd:PRK15473  61 SAELHLEQIIDlmeagvkAGKTVVRLQTGDVSLYGSIREQGEELTKRgIDFQVVPGVSSFLGAAAELGVeytvPEVSQSL 140
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15598100  158 SLSVLSG--VLPEEELRRRLADADAAVVMKLG-RNFDKVRRVLVELGL--ERRALYVERATMANQRIV 220
Cdd:PRK15473 141 IITRMEGrtPVPAREQLESFASHQTSMAIFLSvQRIHRVAERLIAGGYpaTTPVAVIYKATWPESQTV 208
Precorrin-6A-synthase cd11643
Precorrin-6A synthase (also named CobF); Precorrin-6A synthase participates in the pathway ...
13-184 6.23e-08

Precorrin-6A synthase (also named CobF); Precorrin-6A synthase participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. This model represents CobF, the precorrin-6A synthase, an enzyme specific to the aerobic pathway. After precorrin-4 is methylated at C-11 by CobM to produce precorrin-5, CobF catalyzes the removal of the extruded acyl group in the subsequent step, and the addition of a methyl group at C-1. The product of this reaction is precorrin-6A, which gets reduced by an NADH-dependent reductase to yield precorrin-6B. This family includes enzymes in GC-rich Gram-positive bacteria, alpha proteobacteria and Pseudomonas-related species.


Pssm-ID: 381170  Cd Length: 244  Bit Score: 51.73  E-value: 6.23e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  13 GVGPGDPELITLKALRLLRAAPVVgyFVA-KGKKGNAF-----GIIEAHLDQAQVRLpLVYPVTTEKLEPPlCYETIISD 86
Cdd:cd11643   3 GIGPGDPDHLTLQAIEALNRVDVF--FVLdKGEEKSDLaalrrEICERHLGDRPYRV-VEFPDPERDRSPA-DYRAAVAD 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100  87 FYD----TAAEQLAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLATR---YESEVVPGVCSMLGGAAVLGAPLVYRNQSL 159
Cdd:cd11643  79 WHDaraaLWEDAIAEELPEGGTGAFLVWGDPSLYDSTLRILDRLRAGrvaLEVEVIPGISSVQALAARHRIPLNRIGEPV 158
                       170       180       190
                ....*....|....*....|....*....|
gi 15598100 160 SVLSGvlpeeelrRRLADADAA-----VVM 184
Cdd:cd11643 159 HITTG--------RRLAEGGPAgvdnvVVM 180
cbiH PRK15478
precorrin-3B C(17)-methyltransferase;
12-181 3.62e-06

precorrin-3B C(17)-methyltransferase;


Pssm-ID: 185375 [Multi-domain]  Cd Length: 241  Bit Score: 46.80  E-value: 3.62e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100   12 LGVGPGDPELITLKALRLLRAAP-VVGYfvakgkkgnafgiieahldqaQVRLPLVYPVTTEK--LEPPLCYETiisdfy 88
Cdd:PRK15478   5 IGIGPGSQAMMTMEAIEALQAAEiVVGY---------------------KTYTHLVKAFTGDKqvIKTGMCKEI------ 57
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100   89 dtaaEQLAAHLD---AGRDVAVICEGDPFFYGS---YMYLHDRLATRYESEVVPGVCSMLGGAAVLGAPLVYRNQSLSVL 162
Cdd:PRK15478  58 ----ERCQAAIElaqAGHNVALISSGDAGIYGMaglVLELVSKQKLDVEVRLIPGMTASIAAASLLGAPLMHDFCHISLS 133
                        170
                 ....*....|....*....
gi 15598100  163 SGVLPEEELRRRLADADAA 181
Cdd:PRK15478 134 DLLTPWPVIEKRIVAAGEA 152
PRK05991 PRK05991
precorrin-3B C17-methyltransferase; Provisional
7-197 6.06e-06

precorrin-3B C17-methyltransferase; Provisional


Pssm-ID: 180342 [Multi-domain]  Cd Length: 250  Bit Score: 46.28  E-value: 6.06e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100    7 GRLLGLGVGPGDPELITLKALRLLRAAP-VVGYfvakgkkgnafgiiEAHLDQAQVRLPLVYPVTTEKLEpplcyetiis 85
Cdd:PRK05991   3 GRLFVIGTGPGNPEQMTPEALAAVEAATdFFGY--------------GPYLDRLPLRADQLRHASDNREE---------- 58
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598100   86 dfYDTAAEQLAaHLDAGRDVAVICEGDPFFYGSYMYL-----HDRLATR-YESEVVPGVCSMLGGAAVLGAPLVYRNQSL 159
Cdd:PRK05991  59 --LDRAGAALA-MAAAGANVCVVSGGDPGVFAMAAAVceaieNGPAAWRaVDLTIVPGVTAMLAVAARIGAPLGHDFCAI 135
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 15598100  160 SVLSGVLPEEELRRRL-ADADAAVVM------------KLGRNFDKVRRVL 197
Cdd:PRK05991 136 SLSDNLKPWELIEKRLrLAAEAGFVIalynpisrarpwQLGEAFDLLREHL 186
YabN_N_like cd11723
N-terminal S-AdoMet-dependent tetrapyrrole methylase domain of Bacillus subtilis YabN and ...
13-49 1.90e-03

N-terminal S-AdoMet-dependent tetrapyrrole methylase domain of Bacillus subtilis YabN and similar domains; This family includes the S-AdoMet (S-adenosyl-L-methionine or SAM)-dependent tetrapyrrole methylase (TP-methylase) domain of Bacillus subtilis YabN, and similar domains. YabN is a fusion of an N-terminal TP-methylase and a C-terminal MazG-type nucleotide pyrophosphohydrolase domain. MazG-like NTP-PPases have been implicated in house-cleaning functions such as degrading abnormal (d)NTPs. TP-methylases use S-AdoMet in the methylation of diverse substrates. Most TP-methylase family members catalyze various methylation steps in cobalamin (vitamin B12) biosynthesis, other members like diphthine synthase and ribosomal RNA small subunit methyltransferase I (RsmI) act on other substrates. The specific function of YabN's TP-methylase domain is not known.


Pssm-ID: 381177  Cd Length: 218  Bit Score: 38.24  E-value: 1.90e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 15598100  13 GVGPGDPELITLKALRLLRAA----------PVVGYFVAKGKKGNAF 49
Cdd:cd11723   5 GLGPGDPDLLTLGALEALKSAdkvylrtarhPVVEELKEEGIEFESF 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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