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Conserved domains on  [gi|15597006|ref|NP_250500|]
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ABC transporter permease [Pseudomonas aeruginosa PAO1]

Protein Classification

microcin C ABC transporter permease YejB( domain architecture ID 11467933)

microcin C ABC transporter permease YejB is the transmembrane (TM) subunit of the ABC transporter YejABEF that has been shown in Brucella melitensis to be required for resistance to antimicrobial peptides and virulence

Gene Ontology:  GO:0043190|GO:0140359|GO:0042626|GO:0016020|GO:0042884
PubMed:  25750732|24638992|18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YejB COG4174
ABC-type microcin C transport system, permease component YejB [Secondary metabolites ...
 1-360 0e+00

ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism];


:

Pssm-ID: 443333 [Multi-domain]  Cd Length: 363  Bit Score: 696.55  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006   1 MLSYILRRLLLIVPTLFGILLINFIIIQAAPGGPVEQMIAKLEGFDaasGGATGRIS-----GGGGEVAVAGSQYRGAQG 75
Cdd:COG4174   1 MGAYILRRLLLMIPTLLGIMLINFVIVQFAPGGPVEQVIAQLQGTG---GGATGRISggggdAGGGAAAGGGSKYRGARG 77

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006  76 LDPELVKEIERMYGFDKSAPERFMIMLKNYLHLDFGQSFFRDAKVTDLIIEKLPVSISLGLWSTLIMYLVSIPLGIAKAV 155
Cdd:COG4174  78 LDPEFIAELEKQYGFDKPAHERFLLMLKNYLRFDFGESYFRDISVIDLILEKLPVSISLGLWSTLLTYLISIPLGIRKAV 157

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006 156 RHGSVFDIWTSSAIIVGYAIPAFLFAILLVVLFAGGSYWDWFPLRGLTSNNFDQLSLGGKVLDYFWHLALPVTALVIGNF 235
Cdd:COG4174 158 RDGSRFDVWTSTVIIVGYAIPGFLFAILLIVLFAGGSYFDWFPLRGLTSDNWDQLSWWGKILDYLWHLTLPVTAMVIGGF 237

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006 236 ATITLLTKNSFLDEIGKQYVVTARAKGLTERRVLYGHVFRNAMLLVIAGLPAALLGIFFTGSLLIEVIFSLDGLGLLSFE 315
Cdd:COG4174 238 ATLTLLTKNSFLDEIRKQYVLTARAKGLSERRVLYGHVFRNAMLIVIAGFPAAFIGAFFTGSLLIETIFSLDGLGLLGFE 317

                       330       340       350       360
                ....*....|....*....|....*....|....*....|....*
gi 15597006 316 AAMNRDYPVVFGTLFIFTLFGLVMKLISDIVYTLVDPRIDFENRE 360
Cdd:COG4174 318 AVVNRDYPVVFGTLYIFTLIGLVLKLISDLTYVLVDPRIDFEARE 362
 
Name Accession Description Interval E-value
YejB COG4174
ABC-type microcin C transport system, permease component YejB [Secondary metabolites ...
 1-360 0e+00

ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443333 [Multi-domain]  Cd Length: 363  Bit Score: 696.55  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006   1 MLSYILRRLLLIVPTLFGILLINFIIIQAAPGGPVEQMIAKLEGFDaasGGATGRIS-----GGGGEVAVAGSQYRGAQG 75
Cdd:COG4174   1 MGAYILRRLLLMIPTLLGIMLINFVIVQFAPGGPVEQVIAQLQGTG---GGATGRISggggdAGGGAAAGGGSKYRGARG 77

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006  76 LDPELVKEIERMYGFDKSAPERFMIMLKNYLHLDFGQSFFRDAKVTDLIIEKLPVSISLGLWSTLIMYLVSIPLGIAKAV 155
Cdd:COG4174  78 LDPEFIAELEKQYGFDKPAHERFLLMLKNYLRFDFGESYFRDISVIDLILEKLPVSISLGLWSTLLTYLISIPLGIRKAV 157

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006 156 RHGSVFDIWTSSAIIVGYAIPAFLFAILLVVLFAGGSYWDWFPLRGLTSNNFDQLSLGGKVLDYFWHLALPVTALVIGNF 235
Cdd:COG4174 158 RDGSRFDVWTSTVIIVGYAIPGFLFAILLIVLFAGGSYFDWFPLRGLTSDNWDQLSWWGKILDYLWHLTLPVTAMVIGGF 237

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006 236 ATITLLTKNSFLDEIGKQYVVTARAKGLTERRVLYGHVFRNAMLLVIAGLPAALLGIFFTGSLLIEVIFSLDGLGLLSFE 315
Cdd:COG4174 238 ATLTLLTKNSFLDEIRKQYVLTARAKGLSERRVLYGHVFRNAMLIVIAGFPAAFIGAFFTGSLLIETIFSLDGLGLLGFE 317

                       330       340       350       360
                ....*....|....*....|....*....|....*....|....*
gi 15597006 316 AAMNRDYPVVFGTLFIFTLFGLVMKLISDIVYTLVDPRIDFENRE 360
Cdd:COG4174 318 AVVNRDYPVVFGTLYIFTLIGLVLKLISDLTYVLVDPRIDFEARE 362
PRK15133 PRK15133
microcin C ABC transporter permease YejB; Provisional
 1-359 0e+00

microcin C ABC transporter permease YejB; Provisional


Pssm-ID: 185087 [Multi-domain]  Cd Length: 364  Bit Score: 515.07  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006    1 MLSYILRRLLLIVPTLFGILLINFIIIQAAPGGPVEQMIAKLE-----GFDAASGGATGRISGGGGEVAVAGSQYRGAQG 75
Cdd:PRK15133   1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEfgqagGLPGAGGEGVRASHAQTGVGNISDSNYRGGRG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006   76 LDPELVKEIERMYGFDKSAPERFMIMLKNYLHLDFGQSFFRDAKVTDLIIEKLPVSISLGLWSTLIMYLVSIPLGIAKAV 155
Cdd:PRK15133  81 LDPEVIAEITHRYGFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006  156 RHGSVFDIWTSSAIIVGYAIPAFLFAILLVVLFAGGSYWDWFPLRGLTSNNFDQLSLGGKVLDYFWHLALPVTALVIGNF 235
Cdd:PRK15133 161 RNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYFDLFPLRGLVSANFDSLPWYQKITDYLWHITLPVLATVIGGF 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006  236 ATITLLTKNSFLDEIGKQYVVTARAKGLTERRVLYGHVFRNAMLLVIAGLPAALLGIFFTGSLLIEVIFSLDGLGLLSFE 315
Cdd:PRK15133 241 AALTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLLGYE 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 15597006  316 AAMNRDYPVVFGTLFIFTLFGLVMKLISDIVYTLVDPRIDFENR 359
Cdd:PRK15133 321 ATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRIDFEGR 364
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 1-354 2.06e-50

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 170.71  E-value: 2.06e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006     1 MLSYILRRLLLIVPTLFGILLINFIIIQAAPGGPVEQMIaklegfdaasggatgRISGGGGEvavagsqyrgaqgldPEL 80
Cdd:TIGR02789   1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDPAEDYL---------------RLSHIPPT---------------DEA 50

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006    81 VKEIERMYGFDKSAPERFMIMLKNYLHLDFGQSFFRDAKVTDLIIEKLPVSISLGLWSTLIMYLVSIPLGIAKAVRHGSV 160
Cdd:TIGR02789  51 IADMRHSLGLDQPLYVQYFHWLWNALHLDFGISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRL 130

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006   161 FDIWTSSAIIVGYAIPAFLFAILLVVLFAggSYWDWFPLRGLTSnnfdqlslggkvldyFWHLALPVTALVIGNFATITL 240
Cdd:TIGR02789 131 PDHAVRFIIFLGVSIPNFWLAFLLVWGFS--VYLNLLPTNGAGT---------------WQHLVLPAVTLALMSVSIYAR 193

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006   241 LTKNSFLDEIGKQYVVTARAKGLTERRVLYGHVFRNAMLLVIAGLpAALLGIFFTGSLLIEVIFSLDGLGLLSFEAAMNR 320
Cdd:TIGR02789 194 LLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITAL-GMHIGELLGGTFVIENIFSWPGVGRYAISAIFNR 272

                         330       340       350
                  ....*....|....*....|....*....|....
gi 15597006   321 DYPVVFGTLFIFTLFGLVMKLISDIVYTLVDPRI 354
Cdd:TIGR02789 273 DYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRI 306
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 146-354 7.98e-22

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 91.21  E-value: 7.98e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006   146 SIPLGIAKAVRHGSVFDIWTSSAIIVGYAIPAFLFAILLVVLFaggsywdwfplrgltsnnfdqlslggkVLDYFWHLAL 225
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA---------------------------ILSILGHGIL 53

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006   226 PVTALVIGNFATITLLTKNSFLDEIGKQYVVTARAKGLTERRVLYGHVFRNAMLLVIAGLPAAlLGIFFTGSLLIEVIFS 305
Cdd:pfam00528  54 PAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALA-FGGALGGAVLLEFLGS 132

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 15597006   306 LDGLGLLSFEAAMNRDYPVVFGTLFIFTLFGLVMKLISDIVYTLVDPRI 354
Cdd:pfam00528 133 WPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRV 181
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 128-337 3.85e-11

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 61.53  E-value: 3.85e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006 128 LPVSISLGLWSTLIMYLVSIPLGIAkAVRHGSVFDIWTSSAIIVGYAIPAFLFAILLVVLFAGGSYWDWFPlrgltsnnf 207
Cdd:cd06261   1 LLNTLLLALIATLLALVLGLLLGII-LARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILP--------- 70

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006 208 dqlslggkvldyfwHLALPVTALVIGNFATITLLTKNSFLDEIGKQYVVTARAKGLTERRVLYGHVFRNAMLLVIAGLPA 287
Cdd:cd06261  71 --------------GLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVL 136

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*
gi 15597006 288 ALLGIfFTGSLLIEVIFSLDGLGL-----LSFEAAMNRDYPVVFGTLFIFTLFGL 337
Cdd:cd06261 137 AFARA-LGEFALVSFLGGGEAPGPgtgllLIFAILFPGDLGVAAAVALILLLLSL 190
 
Name Accession Description Interval E-value
YejB COG4174
ABC-type microcin C transport system, permease component YejB [Secondary metabolites ...
 1-360 0e+00

ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443333 [Multi-domain]  Cd Length: 363  Bit Score: 696.55  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006   1 MLSYILRRLLLIVPTLFGILLINFIIIQAAPGGPVEQMIAKLEGFDaasGGATGRIS-----GGGGEVAVAGSQYRGAQG 75
Cdd:COG4174   1 MGAYILRRLLLMIPTLLGIMLINFVIVQFAPGGPVEQVIAQLQGTG---GGATGRISggggdAGGGAAAGGGSKYRGARG 77

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006  76 LDPELVKEIERMYGFDKSAPERFMIMLKNYLHLDFGQSFFRDAKVTDLIIEKLPVSISLGLWSTLIMYLVSIPLGIAKAV 155
Cdd:COG4174  78 LDPEFIAELEKQYGFDKPAHERFLLMLKNYLRFDFGESYFRDISVIDLILEKLPVSISLGLWSTLLTYLISIPLGIRKAV 157

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006 156 RHGSVFDIWTSSAIIVGYAIPAFLFAILLVVLFAGGSYWDWFPLRGLTSNNFDQLSLGGKVLDYFWHLALPVTALVIGNF 235
Cdd:COG4174 158 RDGSRFDVWTSTVIIVGYAIPGFLFAILLIVLFAGGSYFDWFPLRGLTSDNWDQLSWWGKILDYLWHLTLPVTAMVIGGF 237

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006 236 ATITLLTKNSFLDEIGKQYVVTARAKGLTERRVLYGHVFRNAMLLVIAGLPAALLGIFFTGSLLIEVIFSLDGLGLLSFE 315
Cdd:COG4174 238 ATLTLLTKNSFLDEIRKQYVLTARAKGLSERRVLYGHVFRNAMLIVIAGFPAAFIGAFFTGSLLIETIFSLDGLGLLGFE 317

                       330       340       350       360
                ....*....|....*....|....*....|....*....|....*
gi 15597006 316 AAMNRDYPVVFGTLFIFTLFGLVMKLISDIVYTLVDPRIDFENRE 360
Cdd:COG4174 318 AVVNRDYPVVFGTLYIFTLIGLVLKLISDLTYVLVDPRIDFEARE 362
PRK15133 PRK15133
microcin C ABC transporter permease YejB; Provisional
 1-359 0e+00

microcin C ABC transporter permease YejB; Provisional


Pssm-ID: 185087 [Multi-domain]  Cd Length: 364  Bit Score: 515.07  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006    1 MLSYILRRLLLIVPTLFGILLINFIIIQAAPGGPVEQMIAKLE-----GFDAASGGATGRISGGGGEVAVAGSQYRGAQG 75
Cdd:PRK15133   1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEfgqagGLPGAGGEGVRASHAQTGVGNISDSNYRGGRG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006   76 LDPELVKEIERMYGFDKSAPERFMIMLKNYLHLDFGQSFFRDAKVTDLIIEKLPVSISLGLWSTLIMYLVSIPLGIAKAV 155
Cdd:PRK15133  81 LDPEVIAEITHRYGFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006  156 RHGSVFDIWTSSAIIVGYAIPAFLFAILLVVLFAGGSYWDWFPLRGLTSNNFDQLSLGGKVLDYFWHLALPVTALVIGNF 235
Cdd:PRK15133 161 RNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYFDLFPLRGLVSANFDSLPWYQKITDYLWHITLPVLATVIGGF 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006  236 ATITLLTKNSFLDEIGKQYVVTARAKGLTERRVLYGHVFRNAMLLVIAGLPAALLGIFFTGSLLIEVIFSLDGLGLLSFE 315
Cdd:PRK15133 241 AALTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLLGYE 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 15597006  316 AAMNRDYPVVFGTLFIFTLFGLVMKLISDIVYTLVDPRIDFENR 359
Cdd:PRK15133 321 ATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRIDFEGR 364
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-354 3.72e-100

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 298.52  E-value: 3.72e-100
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006   1 MLSYILRRLLLIVPTLFGILLINFIIIQAAPGGPVEQMIaklegfdaasggatgrisggggevavagsqyrgAQGLDPEL 80
Cdd:COG0601   1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALL---------------------------------GPRATPEA 47

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006  81 VKEIERMYGFDKSAPERFMIMLKNYLHLDFGQSFFRDAKVTDLIIEKLPVSISLGLWSTLIMYLVSIPLGIAKAVRHGSV 160
Cdd:COG0601  48 IAALRAELGLDQPLLVQYLDWLGGLLRGDLGTSFVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSW 127

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006 161 FDIWTSSAIIVGYAIPAFLFAILLVVLFAggSYWDWFPLRGLTsnnfdqlSLGGKVLDYFWHLALPVTALVIGNFATITL 240
Cdd:COG0601 128 LDRLITVLALLGISIPSFWLGLLLILLFA--VKLGWLPVSGRV-------SPWEDFLDALRHLILPALTLALGSLAGIAR 198

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006 241 LTKNSFLDEIGKQYVVTARAKGLTERRVLYGHVFRNAMLLVIAGLpAALLGIFFTGSLLIEVIFSLDGLGLLSFEAAMNR 320
Cdd:COG0601 199 LTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVTVL-GLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNR 277

                       330       340       350
                ....*....|....*....|....*....|....
gi 15597006 321 DYPVVFGTLFIFTLFGLVMKLISDIVYTLVDPRI 354
Cdd:COG0601 278 DYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRI 311
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 1-354 2.06e-50

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 170.71  E-value: 2.06e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006     1 MLSYILRRLLLIVPTLFGILLINFIIIQAAPGGPVEQMIaklegfdaasggatgRISGGGGEvavagsqyrgaqgldPEL 80
Cdd:TIGR02789   1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDPAEDYL---------------RLSHIPPT---------------DEA 50

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006    81 VKEIERMYGFDKSAPERFMIMLKNYLHLDFGQSFFRDAKVTDLIIEKLPVSISLGLWSTLIMYLVSIPLGIAKAVRHGSV 160
Cdd:TIGR02789  51 IADMRHSLGLDQPLYVQYFHWLWNALHLDFGISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRL 130

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006   161 FDIWTSSAIIVGYAIPAFLFAILLVVLFAggSYWDWFPLRGLTSnnfdqlslggkvldyFWHLALPVTALVIGNFATITL 240
Cdd:TIGR02789 131 PDHAVRFIIFLGVSIPNFWLAFLLVWGFS--VYLNLLPTNGAGT---------------WQHLVLPAVTLALMSVSIYAR 193

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006   241 LTKNSFLDEIGKQYVVTARAKGLTERRVLYGHVFRNAMLLVIAGLpAALLGIFFTGSLLIEVIFSLDGLGLLSFEAAMNR 320
Cdd:TIGR02789 194 LLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITAL-GMHIGELLGGTFVIENIFSWPGVGRYAISAIFNR 272

                         330       340       350
                  ....*....|....*....|....*....|....
gi 15597006   321 DYPVVFGTLFIFTLFGLVMKLISDIVYTLVDPRI 354
Cdd:TIGR02789 273 DYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRI 306
oppB PRK09471
oligopeptide ABC transporter permease OppB;
1-354 2.34e-48

oligopeptide ABC transporter permease OppB;


Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 165.24  E-value: 2.34e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006    1 MLSYILRRLLLIVPTLFGILLINFIIIQAAPGGPveqmiaklegfdaasggatgrisggggevavagsqYRGAQGLDPEL 80
Cdd:PRK09471   1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSP-----------------------------------FTGERTLPPEV 45

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006   81 VKEIERMYGFDKSAPERFMIMLKNYLHLDFGQSF-FRDAKVTDLIIEKLPVSISLGLWSTLIMYLVSIPLGIAKAVRHGS 159
Cdd:PRK09471  46 MANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFkYKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNT 125

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006  160 VFDIWTSSAIIVGYAIPAFLFAILLVVLFAggSYWDWFPLRGLTSNNFDqlslggkvldyfwHLALPVTALVIGNFATIT 239
Cdd:PRK09471 126 KWDYTVMGFAMTGVVIPSFVVAPLLVLIFA--ITLHWLPGGGWNGGALK-------------FMILPMVALSLAYIASIA 190

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006  240 LLTKNSFLDEIGKQYVVTARAKGLTERRVLYGHVFRNAMLLVIAGLPAALLGIFfTGSLLIEVIFSLDGLGLLSFEAAMN 319
Cdd:PRK09471 191 RITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAFVGII-TGSMVIETIFGLPGIGQLFVNGALN 269

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 15597006  320 RDYPVVFG-TLFIFTLFgLVMKLISDIVYTLVDPRI 354
Cdd:PRK09471 270 RDYSLVLSlTILVGALT-ILFNAIVDVLYAVIDPKI 304
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
1-354 1.60e-44

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 156.13  E-value: 1.60e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006    1 MLSYILRRLLLIVPTLFGILLINFIIIQAAPGGPVEQMIaklegfdaasggatgrisggggevavagsqyrGAQGLDPEL 80
Cdd:PRK10914   1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMA--------------------------------GERGISPER 48

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006   81 VKEIERMYGFDKSAPERFMIMLKNYLHLDFGQSFFRDAKVTDLIIEKLPVSISLGLWSTLIMYLVSIPLGIAKAVRHGSV 160
Cdd:PRK10914  49 HAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSI 128

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006  161 FDIWTSSAIIVGYAIPAFLFAILLVVLFAggSYWDWFPLRGLTSNNF---DQLSLGGKVL-------------DYFWHLA 224
Cdd:PRK10914 129 FDHTAVGLALTGYSMPIFWWGMMLIMLVS--VHWNLTPVSGRVSDMVfldDSNPLTGFMLidtaiwgedgnfiDAVAHMI 206

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006  225 LPVTALVIGNFATITLLTKNSFLDEIGKQYVVTARAKGLTERRVLYGHVFRNAMLLVIAGLpAALLGIFFTGSLLIEVIF 304
Cdd:PRK10914 207 LPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVTVI-GLQVGTLLAGAILTETIF 285

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|
gi 15597006  305 SLDGLGLLSFEAAMNRDYPVVFGTLFIFTLFGLVMKLISDIVYTLVDPRI 354
Cdd:PRK10914 286 SWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRI 335
PRK10352 PRK10352
nickel transporter permease NikB; Provisional
 1-354 1.15e-40

nickel transporter permease NikB; Provisional


Pssm-ID: 182400 [Multi-domain]  Cd Length: 314  Bit Score: 145.23  E-value: 1.15e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006    1 MLSYILRRLLLIVPTLFGILLINFIIIQAAPGGPVEQMIaklegfdaasggatgRISGGGGEvavagsqyrgaqgldPEL 80
Cdd:PRK10352   1 MLRYILRRLLLLIPMLLAASVIIFLMLRLGTGDPALDYL---------------RLSNLPPT---------------PEM 50

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006   81 VKEIERMYGFDKSAPERFMIMLKNYLHLDFGQSFFRDAKVTDLIIEKLPVSISLGLWSTLIMYLVSIPLGIAKAVRHGSV 160
Cdd:PRK10352  51 LASTRTMLGLDQPLYVQYGTWLWKALHLDFGISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRL 130

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006  161 FDIWTSSAIIVGYAIPAFLFAILLVVLFAggSYWDWFPLRGltsnnfdqlsLGGkvldyFWHLALPVTALVIGNFATITL 240
Cdd:PRK10352 131 PDFAVRFIAFLGVSMPNFWLAFLLVMAFS--VYLQWLPAMG----------YGG-----WQHIILPAVSIAFMSLAINAR 193

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006  241 LTKNSFLDEIGKQYVVTARAKGLTERRVLYGHVFRNAMLLVIAGLpAALLGIFFTGSLLIEVIFSLDGLGLLSFEAAMNR 320
Cdd:PRK10352 194 LLRASMLEVAGQRHVTWARLRGLSERQVERRHILRNASLPMITAV-GMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNR 272

                        330       340       350
                 ....*....|....*....|....*....|....
gi 15597006  321 DYPVVFGTLFIFTLFGLVMKLISDIVYTLVDPRI 354
Cdd:PRK10352 273 DYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRI 306
SapB COG4168
ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];
1-352 2.41e-34

ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];


Pssm-ID: 443329 [Multi-domain]  Cd Length: 321  Bit Score: 128.80  E-value: 2.41e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006   1 MLSYILRRLLLIVPTLFGILLINFIIIQAAPGGPVEQMiaklEGFDAasggatgrisggggevavagsqyrgaqgldpel 80
Cdd:COG4168   1 MLIYLLRRLNLLLITLLILSLISFSLLYRDPLNPLSDA----SLFSG--------------------------------- 43

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006  81 vkeiermygfdksaperFMIMLKNYLHLDFGQSFFRDAKVTDLIIEKLPVSISLGLWSTLIMYLVSIPLGIAKAVRHGSV 160
Cdd:COG4168  44 -----------------YLFYLQNLLQGDFGISSINGEPILEQLLTVFPATLELCFLAFLLALLIGIPLGILAGIYRGKW 106

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006 161 FDIWTSSAIIVGYAIPAFLFAILLVVLFAggSYWDWFPLRGltsnnfdQLSL--------GGKVLDYFW----------- 221
Cdd:COG4168 107 LDKLISSLSLLGFSIPVFWLALLLILFFS--LNLGWLPVSG-------RYNLlyeippvtGFALIDAWLsdspyrlkaiq 177

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006 222 ----HLALPVTALVIGNFATITLLTKNSFLDEIGKQYVVTARAKGLTERRVLYGHVFRNAMLLVIAGLpAALLGIFFTGS 297
Cdd:COG4168 178 salqHLILPTLVLAVAPTTEVIRLTRQSTEEVMNQNYIKAAATRGLSRFTIIRRHVLRNALPPIIPQL-GLQFSTMLTLA 256

                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|....*
gi 15597006 298 LLIEVIFSLDGLGLLSFEAAMNRDYPVVFGTLFIFTLFGLVMKLISDIVYTLVDP 352
Cdd:COG4168 257 MITEVVFSWPGIGRWLINAIRQQDYAAISAGVIVIGTFVIIVNILSDILGALLNP 311
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 1-357 2.99e-31

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 119.82  E-value: 2.99e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006    1 MLSYILRRLLLIVPTLFGILLINFIIIQAAPGGPveqmiAKLegfdaASGgatgrisggggevavagsqyrgaQGLDPEL 80
Cdd:PRK15081   1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLPGDP-----ARL-----AAG-----------------------PEADAQV 47

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006   81 VKEIERMYGFDKSAPERFMIMLKNYLHLDFGQSFFRDAKVTDLIIEKLPVSISLGLWSTLIMYLVSIPLGIAKAVRHGSV 160
Cdd:PRK15081  48 VALVRQQLGLDQPLPHQFWHYISNALQGDFGTSMVSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRW 127

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006  161 FDIWTSSAIIVGYAIPAFLFAILLVVLFAggSYWDWFPLRGLTSnnfdqlslggkvldyfW-HLALPVTALVIGNFATIT 239
Cdd:PRK15081 128 PDRLGMTLAVSGISFPAFALGMLLMQVFS--VELGWLPTVGADS----------------WqHYILPSLTLGAAVAAVMA 189

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006  240 LLTKNSFLDEIGKQYVVTARAKGLTERRVLYGHVFRNAMLLVIA--GLPaalLGIFFTGSLLIEVIFSLDGLGLLSFEAA 317
Cdd:PRK15081 190 RFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTmmGLQ---FGFLLGGSIVVEKVFNWPGLGRLLVDSV 266

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 15597006  318 MNRDYPVVFGTLFIFTLFGLVMKLISDIVYTLVDPRIDFE 357
Cdd:PRK15081 267 EMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIRYK 306
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 146-354 7.98e-22

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 91.21  E-value: 7.98e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006   146 SIPLGIAKAVRHGSVFDIWTSSAIIVGYAIPAFLFAILLVVLFaggsywdwfplrgltsnnfdqlslggkVLDYFWHLAL 225
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA---------------------------ILSILGHGIL 53

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006   226 PVTALVIGNFATITLLTKNSFLDEIGKQYVVTARAKGLTERRVLYGHVFRNAMLLVIAGLPAAlLGIFFTGSLLIEVIFS 305
Cdd:pfam00528  54 PAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALA-FGGALGGAVLLEFLGS 132

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 15597006   306 LDGLGLLSFEAAMNRDYPVVFGTLFIFTLFGLVMKLISDIVYTLVDPRI 354
Cdd:pfam00528 133 WPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRV 181
PRK15110 PRK15110
peptide ABC transporter permease SapB;
1-352 3.77e-19

peptide ABC transporter permease SapB;


Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 86.67  E-value: 3.77e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006    1 MLSYILRRLLLIVPTLFGILLINFIIIQAAPGGPVEqmiaklegfdaasggatgrisggggevavagsqyrGAqgldpel 80
Cdd:PRK15110   1 MIIFTLRRLLLLIVTLFLLTLVGFSLSYFTPHAPLQ-----------------------------------GA------- 38

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006   81 vkeiermygfdkSAPERFMIMLKNYLHLDFGQSFFRDAKVTDLIIEKLPVSISLGLWSTLIMYLVSIPLGIAKAVRHGSV 160
Cdd:PRK15110  39 ------------SLWDAWVFWFNGLLHWDFGVSSINGQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGVTRHKW 106

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006  161 FDIWTSSAIIVGYAIPAFLFAILLVVLFAggSYWDWFPLRGltsnNFDQL----SLGGKVLDYFW--------------- 221
Cdd:PRK15110 107 QDNLISALALLGFSIPVFWLALLLTLFFS--LTLGWLPVSG----RFDLLyevkPVTGFALIDAWlsdspwrdemimsai 180

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006  222 -HLALPVTALVIGNFATITLLTKNSFLDEIGKQYVVTARAKGLTERRVLYGHVFRNAMLLVIAGLpAALLGIFFTGSLLI 300
Cdd:PRK15110 181 rHMILPVITLAVAPTTEVIRLMRISTIEVYDQNYVKAAATRGLSRFTILRRHVLHNALPPVIPRL-GLQFSTMLTLAMIT 259

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|..
gi 15597006  301 EVIFSLDGLGLLSFEAAMNRDYPVVFGTLFIFTLFGLVMKLISDIVYTLVDP 352
Cdd:PRK15110 260 EMVFSWPGLGRWLINAIRQQDYAAISAGVMVVGSLVIIVNVLSDILGAMANP 311
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 128-337 3.85e-11

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 61.53  E-value: 3.85e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006 128 LPVSISLGLWSTLIMYLVSIPLGIAkAVRHGSVFDIWTSSAIIVGYAIPAFLFAILLVVLFAGGSYWDWFPlrgltsnnf 207
Cdd:cd06261   1 LLNTLLLALIATLLALVLGLLLGII-LARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILP--------- 70

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597006 208 dqlslggkvldyfwHLALPVTALVIGNFATITLLTKNSFLDEIGKQYVVTARAKGLTERRVLYGHVFRNAMLLVIAGLPA 287
Cdd:cd06261  71 --------------GLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVL 136

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*
gi 15597006 288 ALLGIfFTGSLLIEVIFSLDGLGL-----LSFEAAMNRDYPVVFGTLFIFTLFGL 337
Cdd:cd06261 137 AFARA-LGEFALVSFLGGGEAPGPgtgllLIFAILFPGDLGVAAAVALILLLLSL 190
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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