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Conserved domains on  [gi|15596284|ref|NP_249778|]
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flagellar hook-associated protein FlgL [Pseudomonas aeruginosa PAO1]

Protein Classification

flagellar hook-associated protein FlgL( domain architecture ID 11483463)

flagellar hook-associated protein FlgL, together with FlgK, forms the junction between the hook and the filament in the flagellum and provides a structural base where flagellin, a filament-forming protein, is inserted for the initiation of filament elongation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 1-438 4.06e-149

flagellar hook-associated protein FlgL; Reviewed


:

Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 429.72  E-value: 4.06e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284    1 MRISTIQAFNNSVSGISRNYADLTRTQAEISAGKRLLTPADDPVGAVRLLQLNQEQALNSQYKSGITAAKNSLQQEETIL 80
Cdd:PRK08870   1 MRISTAQMYQQSVNSMLDQQSQLSQLQQQLSSGKKLLTPSDDPVAAAQAVNLSQQSALLDQYTKNINLARNRLQQEESTL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284   81 NSVGTVIHRIREIAVQAGNGGLDASDKNALATELAQREDELLNLLNSRDASGKYLFSGSQGDTQPFVRNPDGTYSYNGDE 160
Cdd:PRK08870  81 GSVEDLLQRARELVVQAGNGSLSDSDRQAIATELQGLRDQLLNLANSKDGSGNYLFAGTQSGTQPFAFDASGNVVYSGDQ 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  161 GQREVQIASSTFIAISDNGKILFESGSNANRVSTGKDAAGPDASGNPSDSSIslglvtdkeaydtvfPSSTPPLASDGVG 240
Cdd:PRK08870 161 GQRQVQVADSVQVATNDPGDEVFMSVPNGGGDYVPNANASNTGTGLLGSASI---------------TDPSDPVNGDTYT 225

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  241 IHFTDAKN--YVVYDLKTIPPgydwstsdpnppsfatlaSGKIDDNAQTSDFITFGGVKVQIDGEPQGGDTFSIKRQPDQ 318
Cdd:PRK08870 226 ITFTDNGAggTNTYVTDSSTG------------------TVVTAQAYDAGQPINFNGVEVQISGAPAAGDSFTLTPAPQA 287

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  319 ekrSLLNTVSDLRKALLSAEDTPAGNLAIRDAVGVAISNLDSSNSQILTGQGRIGARMNVAESTETFIDDVTLVNTAVIS 398
Cdd:PRK08870 288 ---SIFDTLDDAIAALESPVSTPAADAALQNALAQALRNLDNALNNVLTARASVGARLNELDSAEAVHEDNKLQNTSALS 364

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|
gi 15596284  399 QIQDLDYPEALSRLTLQSTIMDAAQQSFVKIRGLSLFNYL 438
Cdd:PRK08870 365 DLEDLDYASAISEFELQQAALQAAQQAFSKVQSLSLFNYI 404
 
Name Accession Description Interval E-value
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 1-438 4.06e-149

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 429.72  E-value: 4.06e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284    1 MRISTIQAFNNSVSGISRNYADLTRTQAEISAGKRLLTPADDPVGAVRLLQLNQEQALNSQYKSGITAAKNSLQQEETIL 80
Cdd:PRK08870   1 MRISTAQMYQQSVNSMLDQQSQLSQLQQQLSSGKKLLTPSDDPVAAAQAVNLSQQSALLDQYTKNINLARNRLQQEESTL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284   81 NSVGTVIHRIREIAVQAGNGGLDASDKNALATELAQREDELLNLLNSRDASGKYLFSGSQGDTQPFVRNPDGTYSYNGDE 160
Cdd:PRK08870  81 GSVEDLLQRARELVVQAGNGSLSDSDRQAIATELQGLRDQLLNLANSKDGSGNYLFAGTQSGTQPFAFDASGNVVYSGDQ 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  161 GQREVQIASSTFIAISDNGKILFESGSNANRVSTGKDAAGPDASGNPSDSSIslglvtdkeaydtvfPSSTPPLASDGVG 240
Cdd:PRK08870 161 GQRQVQVADSVQVATNDPGDEVFMSVPNGGGDYVPNANASNTGTGLLGSASI---------------TDPSDPVNGDTYT 225

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  241 IHFTDAKN--YVVYDLKTIPPgydwstsdpnppsfatlaSGKIDDNAQTSDFITFGGVKVQIDGEPQGGDTFSIKRQPDQ 318
Cdd:PRK08870 226 ITFTDNGAggTNTYVTDSSTG------------------TVVTAQAYDAGQPINFNGVEVQISGAPAAGDSFTLTPAPQA 287

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  319 ekrSLLNTVSDLRKALLSAEDTPAGNLAIRDAVGVAISNLDSSNSQILTGQGRIGARMNVAESTETFIDDVTLVNTAVIS 398
Cdd:PRK08870 288 ---SIFDTLDDAIAALESPVSTPAADAALQNALAQALRNLDNALNNVLTARASVGARLNELDSAEAVHEDNKLQNTSALS 364

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|
gi 15596284  399 QIQDLDYPEALSRLTLQSTIMDAAQQSFVKIRGLSLFNYL 438
Cdd:PRK08870 365 DLEDLDYASAISEFELQQAALQAAQQAFSKVQSLSLFNYI 404
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 2-438 5.76e-84

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 259.97  E-value: 5.76e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284     2 RISTIQAFNNSVSGISRNYADLTRTQAEISAGKRLLTPADDPVGAVRLLQLNQEQALNSQYKSGITAAKNSLQQEETILN 81
Cdd:TIGR02550   1 RVSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284    82 SVGTVIHRIREIAVQAGNGGLDASDKNALATELAQREDELLNLLNSRDASGKYLFSGSQGDTQPFVRNPDGTYSYNGDEG 161
Cdd:TIGR02550  81 SVGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGTKTDTPPFSEDEGGEVTYNGDGG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284   162 QREVQIASSTFIAISDNGKILFESGSNANrvstgkdaagpdasgnpsdssislglvtdkeaydtvfpsstpplasdgvgi 241
Cdd:TIGR02550 161 QRKVQVASNRSMPIGHPGDKVFMSIPNND--------------------------------------------------- 189

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284   242 hftdaknyvvydlktippgydwstsdpnppsfatlasgkIDDNAQTSDFITfggVKVQIDGEPQGGDTfsikrqpdqekr 321
Cdd:TIGR02550 190 ---------------------------------------KSVFSTGDDLID---ALKKLEDALSSGDA------------ 215

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284   322 sllntvsdlrkallsaedtpagnlaiRDAVGVAISNLDSSNSQILTGQGRIGARMNVAESTETFIDDVTLVNTAVISQIQ 401
Cdd:TIGR02550 216 --------------------------KAALSASLNDLDKALDNVLSARAEVGARLNRLENLNSRLSEQKLQLTEQLSDLE 269

                         410       420       430
                  ....*....|....*....|....*....|....*..
gi 15596284   402 DLDYPEALSRLTLQSTIMDAAQQSFVKIRGLSLFNYL 438
Cdd:TIGR02550 270 DVDLAEAISDLNMQQAALQAALKTFAKIQQLSLFDYL 306
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
1-168 1.52e-47

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 163.50  E-value: 1.52e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284   1 MRISTIQAFNNSVSGISRNYADLTRTQAEISAGKRLLTPADDPVGAVRLLQLNQEQALNSQYKSGITAAKNSLQQEETIL 80
Cdd:COG1344   1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  81 NSVGTVIHRIREIAVQAGNGGLDASDKNALATELAQREDELLNLLNSRDASGKYLFSGSQGDTQPFvrnpdgTYSYNGDE 160
Cdd:COG1344  81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTATDTPPF------QVDYQGDA 154


                ....*...
gi 15596284 161 GQREVQIA 168
Cdd:COG1344 155 GQRTAALG 162
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 3-140 4.70e-21

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 88.55  E-value: 4.70e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284     3 ISTIQAFNNSVSGISRNYADLTRTQAEISAGKRLLTPADDPVGAVRLLQLNQEQALNSQYKSGITAAKNSLQQEETILNS 82
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 15596284    83 VGTVIHRIREIAVQAGNGGLDASDKNALATELAQREDELLNLLNSRDASGKYLFSGSQ 140
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGIN 138
 
Name Accession Description Interval E-value
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 1-438 4.06e-149

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 429.72  E-value: 4.06e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284    1 MRISTIQAFNNSVSGISRNYADLTRTQAEISAGKRLLTPADDPVGAVRLLQLNQEQALNSQYKSGITAAKNSLQQEETIL 80
Cdd:PRK08870   1 MRISTAQMYQQSVNSMLDQQSQLSQLQQQLSSGKKLLTPSDDPVAAAQAVNLSQQSALLDQYTKNINLARNRLQQEESTL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284   81 NSVGTVIHRIREIAVQAGNGGLDASDKNALATELAQREDELLNLLNSRDASGKYLFSGSQGDTQPFVRNPDGTYSYNGDE 160
Cdd:PRK08870  81 GSVEDLLQRARELVVQAGNGSLSDSDRQAIATELQGLRDQLLNLANSKDGSGNYLFAGTQSGTQPFAFDASGNVVYSGDQ 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  161 GQREVQIASSTFIAISDNGKILFESGSNANRVSTGKDAAGPDASGNPSDSSIslglvtdkeaydtvfPSSTPPLASDGVG 240
Cdd:PRK08870 161 GQRQVQVADSVQVATNDPGDEVFMSVPNGGGDYVPNANASNTGTGLLGSASI---------------TDPSDPVNGDTYT 225

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  241 IHFTDAKN--YVVYDLKTIPPgydwstsdpnppsfatlaSGKIDDNAQTSDFITFGGVKVQIDGEPQGGDTFSIKRQPDQ 318
Cdd:PRK08870 226 ITFTDNGAggTNTYVTDSSTG------------------TVVTAQAYDAGQPINFNGVEVQISGAPAAGDSFTLTPAPQA 287

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  319 ekrSLLNTVSDLRKALLSAEDTPAGNLAIRDAVGVAISNLDSSNSQILTGQGRIGARMNVAESTETFIDDVTLVNTAVIS 398
Cdd:PRK08870 288 ---SIFDTLDDAIAALESPVSTPAADAALQNALAQALRNLDNALNNVLTARASVGARLNELDSAEAVHEDNKLQNTSALS 364

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|
gi 15596284  399 QIQDLDYPEALSRLTLQSTIMDAAQQSFVKIRGLSLFNYL 438
Cdd:PRK08870 365 DLEDLDYASAISEFELQQAALQAAQQAFSKVQSLSLFNYI 404
flgL PRK12717
flagellar hook-associated protein 3;
1-438 1.32e-127

flagellar hook-associated protein 3;


Pssm-ID: 171679 [Multi-domain]  Cd Length: 523  Bit Score: 379.09  E-value: 1.32e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284    1 MRISTIQAFNNSVSGISRNYADLTRTQAEISAGKRLLTPADDPVGAVRLLQLNQEQALNSQYKSGITAAKNSLQQEETIL 80
Cdd:PRK12717   1 MRISTSQFYESSAANYQRNYSNLVKTQEQASSGIRIQTAADDPVGAARLLQLQQQQAMLDQYSGNITTIKNSLTQEESTL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284   81 NSVGTVIHRIREIAVQAGNGGLDASDKNALATELAQREDELLNLLNSRDASGKYLFSGSQGDTQPFVRNPDGTYSYNGDE 160
Cdd:PRK12717  81 TSINDTLQRARELAVSAGNGGLTDADRKAIASELKQIEAQLLGLMNSKDANGQYLFAGSKSDTPPYVRNADGTYSYQGDQ 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  161 GQREVQIASSTFIAISDNGKILFESGSNANRVST---------GK----------------------------------- 196
Cdd:PRK12717 161 TQLSLQVGDTLNLAANDTGYSAFEQAVNTSRTQTtltspatddGRvglsnglvtssvtynaqfragepytltftsgtqfk 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  197 --DAAGPD----------------------------------------------------------------ASGNPSDS 210
Cdd:PRK12717 241 itDASGNDvtseasgggkfdpgteggqtisfrgvdlelnvnlkagsgadadaalaghsftlqskpdtftatrSPGNTSTA 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  211 SISLGLVTDKEAYDTVFPSStpplasdGVGIHFTDAKNYVVYdlktippgydwstSDPNPPSFATLASGKIDDNAqtsdf 290
Cdd:PRK12717 321 QVTGATITDPAAYNSTFPSS-------GAVLKFTSATAYELY-------------AQPVTADSKPISSGTLTGNT----- 375

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  291 ITFGGVKVQIDGEPQGGDTFSIKRQpDQEKRSLLNTVSDLRKALLSAEDT-PAGNLAIRDAVGVAISNLDSSNSQILTGQ 369
Cdd:PRK12717 376 ATAAGVTFTLSGTPAAGDQFSVQAN-THQTQNILDTLSQLRKALSTPTDGdPAARQALRAALASALGNLASAIDQVDTAR 454

                        490       500       510       520       530       540
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15596284  370 GRIGARMNVAESTETFIDDVTLVNTAVISQIQDLDYPEALSRLTLQSTIMDAAQQSFVKIRGLSLFNYL 438
Cdd:PRK12717 455 SSIGARGNALDIQGTTNESLSLANTTTQSSIRDSDPAEATTRLTLQQTMLEASQLAFVKISQLSLFNQL 523
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 2-438 5.76e-84

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 259.97  E-value: 5.76e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284     2 RISTIQAFNNSVSGISRNYADLTRTQAEISAGKRLLTPADDPVGAVRLLQLNQEQALNSQYKSGITAAKNSLQQEETILN 81
Cdd:TIGR02550   1 RVSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284    82 SVGTVIHRIREIAVQAGNGGLDASDKNALATELAQREDELLNLLNSRDASGKYLFSGSQGDTQPFVRNPDGTYSYNGDEG 161
Cdd:TIGR02550  81 SVGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGTKTDTPPFSEDEGGEVTYNGDGG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284   162 QREVQIASSTFIAISDNGKILFESGSNANrvstgkdaagpdasgnpsdssislglvtdkeaydtvfpsstpplasdgvgi 241
Cdd:TIGR02550 161 QRKVQVASNRSMPIGHPGDKVFMSIPNND--------------------------------------------------- 189

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284   242 hftdaknyvvydlktippgydwstsdpnppsfatlasgkIDDNAQTSDFITfggVKVQIDGEPQGGDTfsikrqpdqekr 321
Cdd:TIGR02550 190 ---------------------------------------KSVFSTGDDLID---ALKKLEDALSSGDA------------ 215

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284   322 sllntvsdlrkallsaedtpagnlaiRDAVGVAISNLDSSNSQILTGQGRIGARMNVAESTETFIDDVTLVNTAVISQIQ 401
Cdd:TIGR02550 216 --------------------------KAALSASLNDLDKALDNVLSARAEVGARLNRLENLNSRLSEQKLQLTEQLSDLE 269

                         410       420       430
                  ....*....|....*....|....*....|....*..
gi 15596284   402 DLDYPEALSRLTLQSTIMDAAQQSFVKIRGLSLFNYL 438
Cdd:TIGR02550 270 DVDLAEAISDLNMQQAALQAALKTFAKIQQLSLFDYL 306
flgL PRK07192
flagellar hook-associated protein FlgL; Reviewed
 1-438 9.82e-73

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 235956 [Multi-domain]  Cd Length: 305  Bit Score: 231.06  E-value: 9.82e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284    1 MRISTIQAFNNSVSGISRNYADLTRTQAEISAGKRLLTPADDPVGAVRLLQLNQEQALNSQYKSGITAAKNSLQQEETIL 80
Cdd:PRK07192   1 MRISTNTLYSTMLRSIQQLQAGLGKLQQQMSTGKRILTPSDDPIASARLLELSREQSNNSQYADNIANLSNSLNNQEGHL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284   81 NSVGTVIHRIREIAVQAGNGGLDASDKNALATELAQREDELLNLLNSRDASGKYLFSGSQGDTQPFVRNPDG-TYSYNGD 159
Cdd:PRK07192  81 SGVNDQLQSIRSLLVAAGNGSLSDEDRSAMATELRSMLDSLLGLANAKDSEGNYLFSGTASNTQPITFDAAGgTYTYNGN 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  160 EGQREVQIASSTFIAISDNGKILFESGSNanrvstgkdaagpdasgnpsdssislglvtdkeaydtvfpsstpplasdgv 239
Cdd:PRK07192 161 SDQRQVQVGEGVQMPVNVTGQSVFQGGGL--------------------------------------------------- 189

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  240 gihftdaknyvvydlktippgydwstsdpnppsfatlasgkiddnaqtsdfitfggvkvqidgepqggdtfsikrqpdqe 319
Cdd:PRK07192     --------------------------------------------------------------------------------

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  320 krSLLNTVSDLrKALLSAEDTPAGNLAIRDAVGVAISNLDSSNSQILTGQGRIGARMNVAESTETFIDDVTLVNTAVISQ 399
Cdd:PRK07192 190 --DVFNTLDKL-IDLLETPALPAADAALTAAVDEALGAIDDALDNVLTVRTELGSRQNELDLLDGNHEDRKLQYQKILSD 266

                        410       420       430
                 ....*....|....*....|....*....|....*....
gi 15596284  400 IQDLDYPEALSRLTLQSTIMDAAQQSFVKIRGLSLFNYL 438
Cdd:PRK07192 267 LQDLDYAEALSDLSNQMAALEAAQKTFVKINSLSLFNLI 305
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
1-168 1.52e-47

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 163.50  E-value: 1.52e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284   1 MRISTIQAFNNSVSGISRNYADLTRTQAEISAGKRLLTPADDPVGAVRLLQLNQEQALNSQYKSGITAAKNSLQQEETIL 80
Cdd:COG1344   1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  81 NSVGTVIHRIREIAVQAGNGGLDASDKNALATELAQREDELLNLLNSRDASGKYLFSGSQGDTQPFvrnpdgTYSYNGDE 160
Cdd:COG1344  81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTATDTPPF------QVDYQGDA 154


                ....*...
gi 15596284 161 GQREVQIA 168
Cdd:COG1344 155 GQRTAALG 162
flgL PRK12718
flagellar hook-associated protein FlgL; Provisional
 1-436 3.67e-44

flagellar hook-associated protein FlgL; Provisional


Pssm-ID: 79176 [Multi-domain]  Cd Length: 510  Bit Score: 161.51  E-value: 3.67e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284    1 MRISTIQAFNNSVSGISRNYADLTRTQAEISAGKRLLTPADDPVGAVRLLQLNQEQALNSQYKSGITAAKNSLQQEETIL 80
Cdd:PRK12718   1 MRLSTALIYQNGLNGVLNQEAAMARLQEQLSSGRRVLTPADDPLAAALAVNVSQTSSMNSNYDANRKQAEQALGAQTNTL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284   81 NSVGTVIHRIREIAVQAGNGGLDASDKNALATELAQREDELLNLLNSRDASGKYLFSGSQGDTQPFVRN-PDGTYSYNGD 159
Cdd:PRK12718  81 QSVVKNMQEMLKRVVEAGNGTMSDADRQALVIALKGAREELVGLANATDGNGQYLFSGYKGFTQPYSFDaATGKVTYNGD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  160 EGQREVQIASSTFIAISDNGKILFESGSNANRVSTGKDAAGPDASGNPSDSS-----------------ISLGLVTDKEA 222
Cdd:PRK12718 161 LGQRGIQVDQSRLMSGGDVGSDIFNSVTSGTLAYIADAGAGNAGTGQYSAVSfdgpragnyvgrdfrieFTRDAVTDELQ 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  223 YDTVF-PSSTPP---------------LASDGVGIHFTDAKNyvVYDLKTIPPGYDWS-----------------TSDPN 269
Cdd:PRK12718 241 YSVLSdPPVVPPeqplpanmpysegsvIDMNGVSIKLSGQPE--AGDVFTVETPKSWKmgvqgdaantgsatltpVSLPD 318

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  270 PPSFATLASGKIDDNA----------------------QTSDFITFGGVKVQIDGEPQGGDTFSIKrQPDQEKRSLLNTV 327
Cdd:PRK12718 319 GLTGKNLSVAFLDDGAggllysvtstppdpslpanvpvKPGDVIDIGGLKVKVDGQPAAGDTYAVT-TPKSANVDVFDTL 397

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  328 SDLRKALLSA-EDTPAGNLAIRDAVGVAISNLDSSNSQILTGQGRIGARMNVAESTETFIDDVTLVNTAVISQIQDLDYP 406
Cdd:PRK12718 398 NDLIGALDTPiSGDPQAAAALANTLATANKKLNLSLDNVLTVQASVGARLNELEALGNTGAQKGLSYVKQLSDLEDVNIY 477

                        490       500       510
                 ....*....|....*....|....*....|
gi 15596284  407 EALSRLTLQSTIMDAAQQSFVKIRGLSLFN 436
Cdd:PRK12718 478 QATSDLLLRQVALQAASLALQRIQGNSLFS 507
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 1-190 7.53e-38

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 139.36  E-value: 7.53e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284    1 MRISTIQAFNNSVSGISRNYADLTRTQAEISAGKRLLTPADDPVGAVRLLQLNQEQALNSQYKSGITAAKNSLQQEETIL 80
Cdd:PRK07701   1 MRVTQNMLANNFLRNINSNLEKLDKYQEQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNASDAKSWLENTESAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284   81 NSVGTVIHRIREIAVQAGNGGLDASDKNALATELAQREDELLNLLNSRdASGKYLFSGSQGDTQPFVRNPDgTYSYNGDE 160
Cdd:PRK07701  81 DQATDILQRARELAVQAANGTNTQTDRQAIAQEIEQLKEQLIQIANTQ-YNGRYIFNGTKTDTPPVTDDGD-NIENSTDS 158

                        170       180       190
                 ....*....|....*....|....*....|
gi 15596284  161 GQREVQIASSTFIAISDNGKILFESGSNAN 190
Cdd:PRK07701 159 GDIEFEIAKGNTINVNVPGDKAFGGQSGGG 188
PRK06663 PRK06663
flagellar hook-associated protein 3;
1-438 1.62e-35

flagellar hook-associated protein 3;


Pssm-ID: 180648 [Multi-domain]  Cd Length: 419  Bit Score: 135.97  E-value: 1.62e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284    1 MRISTIQAFNNSVSGISRNYADLTRTQAEISAGKRLLTPADDPVGAVRLLQLNQEQALNSQYKSGITAAKNSLQQEETIL 80
Cdd:PRK06663   2 MRVSHPMQYNNLKSSLRRQESKMTKLQNQLSTGQRIQKLRDDPTAATHSIRYKSRLFKLDRYQKNIDDGKDRLRYAEGYL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284   81 NSVGTVIHRIREIAVQAGNGGLDASDKNALATELAQREDELLNLLNSRDASGKYLFSGSQGDTQPF------VRNPDG-- 152
Cdd:PRK06663  82 QSITNILQRARELAVQGANGTYQADDKKKIAKEIDELLEDLVDIANARGADGYSIFSGTKIDTEPFevirgnIKGLQGda 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  153 ------TYSYNGDEGQREVQIASSTFIAISDNGKILFeSGSNANRVSTgKDAAGPDASgnpSDSSISL-GLVTDKEAYDT 225
Cdd:PRK06663 162 gsnqiiGVEYNGDIGEQNREIENGIYIPVNYPGNKVF-WGTNQSIISS-VDASGYVVK---EDQKIYIdGVEIHLSAGDT 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  226 VfpsstpplasDGVGIHFTDAKNYVVYDLKTIPPGYDWSTSDPNPPSFATLASGKIddnaqtsdFITFGGVKVQIDGEPq 305
Cdd:PRK06663 237 I----------DDIIAKINDSSAPVKASLDPVLNSISLKTTTPHQIWLEDEEGGTV--------LQDLGLITNATKEPP- 297

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  306 ggdtFSIKRQPDQEKRSLLNTVSDLRKALLSAEDTPAGnlairdavGVAISNLDSSNSQILTGQGRIGARMNVAESTETF 385
Cdd:PRK06663 298 ----YNYSNSAEVSGRSIFDSLIQLRDALLNNDQELIG--------GRALGEIDEALDNLLTTLADLGAKENRLDRSYAR 365

                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|...
gi 15596284  386 IDDVTLVNTAVISQIQDLDYPEALSRLTLQSTIMDAAQQSFVKIRGLSLFNYL 438
Cdd:PRK06663 366 ISKEKLDMTEALSKNEDIDVTEAITNLNMLELAHQASLGVSGKIMQPTLLDFL 418
flgL PRK08027
flagellar hook-filament junction protein FlgL;
1-212 3.32e-33

flagellar hook-filament junction protein FlgL;


Pssm-ID: 181202 [Multi-domain]  Cd Length: 317  Bit Score: 127.17  E-value: 3.32e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284    1 MRISTIQAFNNSVSGISRNYADLTRTQAEISAGKRLLTPADDPVGAVRLLQLNQEQALNSQYKSGITAAKNSLQQEETIL 80
Cdd:PRK08027   1 MRLSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284   81 NSVGTVIHRIREIAVQAGNGGLDASDKNALATELAQREDELLNLLNSRDASGKYLFSGSQGDTQPFVrnpDGTYSYNGDE 160
Cdd:PRK08027  81 SQVTTAIQNAQEKIVYAGNGTLSDDDRASLATDLQGLRDQLLNLANTTDGNGRYIFAGYKTDKAPFD---EATGGYVGGT 157

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 15596284  161 GQREVQIASSTFIAISDNGKILFESgsnanrvSTGKDAAGPDasGNPSDSSI 212
Cdd:PRK08027 158 ESITQQVDAARSMVIGHTGDQIFDS-------ITSNAVPEPD--GSASETNL 200
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 3-140 4.70e-21

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 88.55  E-value: 4.70e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284     3 ISTIQAFNNSVSGISRNYADLTRTQAEISAGKRLLTPADDPVGAVRLLQLNQEQALNSQYKSGITAAKNSLQQEETILNS 82
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 15596284    83 VGTVIHRIREIAVQAGNGGLDASDKNALATELAQREDELLNLLNSRDASGKYLFSGSQ 140
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGIN 138
flgL PRK08073
flagellar hook-associated protein 3;
1-154 5.95e-19

flagellar hook-associated protein 3;


Pssm-ID: 181222 [Multi-domain]  Cd Length: 287  Bit Score: 86.57  E-value: 5.95e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284    1 MRISTIQAFNNSVSGISRNYADLTRTQAEISAGKRLLTPADDPVGAVRLLQLNQEQALNSQYKSGITAAKNSLQQEETIL 80
Cdd:PRK08073   1 MRVSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLSMSEDPLAASKSFAIQHSLANIEQMQKDVADSKNVLNQTENTL 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15596284   81 NSVGTVIHRIREIAVQAGNGGLDASDKNALATELAQREDELLNLLNSRDaSGKYLFSGSQGDTQPFVRnpDGTY 154
Cdd:PRK08073  81 SGMSKSLTRVDQLVLQALNGTNDEKELKAIGAEIDQILKQVVYLANTKE-QGRYVFGGDSAEKKPFTE--DGTY 151
flgL PRK08412
flagellar hook-associated protein FlgL; Validated
 1-159 8.29e-11

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 236261 [Multi-domain]  Cd Length: 827  Bit Score: 64.07  E-value: 8.29e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284    1 MRISTIQAFNNSVSGISRNYADLTRTQAEISAGKRLLTPADDPVGAVRLLQLNQEQALNSQYKSGITAAKNSLQQEETIL 80
Cdd:PRK08412   1 MRVTFGSKYNQMNNYQNALQNKLNDVNTQIASGLKIQYGYQDSDVYNQNLKLQYEENTLDQGIDVASSAYTFTLNTDKAL 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15596284   81 NSVGTVIHRIREIAVQAGNGGLDASDKNALATELAQREDELLNLLNSrDASGKYLFSGSQGDTQPFvrNPDGTYSYNGD 159
Cdd:PRK08412  81 NEFSKTMEAFKTKLIQAANDVHSETSREAIANDLEALKEHMINLANT-SIGGEFLFSGSKVDTKPI--DSNGTYHGNDE 156
PRK12803 PRK12803
flagellin; Provisional
 10-121 8.23e-10

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 59.82  E-value: 8.23e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284   10 NNSVsgisrNYADLTRTQAEISAGKRLLTPADDPVGAVRLLQLNQEQALNSQYKSGITAAKNSLQQEETILNSVGTVIHR 89
Cdd:PRK12803  15 NNSI-----NAANLSKTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNLNEVEKVLVR 89

                         90       100       110
                 ....*....|....*....|....*....|..
gi 15596284   90 IREIAVQAGNGGLDASDKNALATELAQREDEL 121
Cdd:PRK12803  90 MKELAVQSGNGTYSDADRGSIQIEIEQLTDEI 121
PRK12802 PRK12802
flagellin; Provisional
 16-142 3.21e-09

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 57.58  E-value: 3.21e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284   16 ISRNYADLTRTQAEISAGKRLLTPADDPVGavrllqLNQEQALNSQYKSGITAAKNS------LQQEETILNSVGTVIHR 89
Cdd:PRK12802  18 LSRASDALSTSMTRLSSGLKINSAKDDAAG------LQIATRQTSQIRGQTQAIKNAndgisiAQTAEGALQESTNILQR 91

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 15596284   90 IREIAVQAGNGGLDASDKNALATELAQREDELLNLLNSRDASGKYLFSGSQGD 142
Cdd:PRK12802  92 MRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLDGSAGT 144
PRK14692 PRK14692
flagellar hook-associated protein FlgL;
1-160 2.90e-08

flagellar hook-associated protein FlgL;


Pssm-ID: 173155 [Multi-domain]  Cd Length: 749  Bit Score: 56.12  E-value: 2.90e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284    1 MRISTIQAFNNSVSGISRNYADLTRTQAEISAGKRLLTPADDPVGAVRLLQLNQEQALNSQYKSGITAAKNSLQQEETIL 80
Cdd:PRK14692   1 MRITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284   81 NSVGTVIHRIREIAVQAGNGGLDASDKNALATELAQREDELLNLLNSrDASGKYLFSGSQGDTQPFvrnpDGTYSYNGDE 160
Cdd:PRK14692  81 QDMVKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESIVQLANT-SVNGQYLFAGSQVANKPF----DSNGNYYGDK 155
PRK12804 PRK12804
flagellin; Provisional
 1-205 5.99e-07

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 50.77  E-value: 5.99e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284    1 MRISTIQAFNNSVSGISRNYADLTRTQAEISAGKRLLTPADDPVGavrllqLNQEQALNSQYKSGITAAKNS------LQ 74
Cdd:PRK12804   1 MRINHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAG------LAISEKMRGQIRGLEMASKNAqdgislIQ 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284   75 QEETILNSVGTVIHRIREIAVQAGNGGL-DASDKNALATELAQREDELLNLLNSRDASGKYLFSGSQGDTQPFVRNPDGT 153
Cdd:PRK12804  75 TAEGALTETHSILQRVRELVVQAGNTGTqDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKLLDGTFKPAAPAAGTKSLT 154

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 15596284  154 YSYNGDEGQR---EVQIASSTFIAISDNGKILFESGSNANRVSTGKDAAGPDASG 205
Cdd:PRK12804 155 FQIGANAAQQlsvNIEAMSADALGVKDTDGTLVTGKSVSDIDVTKFANAAAAADG 209
PRK12806 PRK12806
flagellin; Provisional
 30-421 6.66e-07

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 51.23  E-value: 6.66e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284   30 ISAGKRLLTPADDPVGavrllqLNQEQALNSQYKSGITAAKNS------LQQEETILNSVGTVIHRIREIAVQAGNGGLD 103
Cdd:PRK12806  32 LSSGLRINSAKDDAAG------LAISQRMTAQIRGMNQAVRNAndgislAQVAEGAMQETTNILQRMRELSVQAANSTNN 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  104 ASDKNALATELAQREDELLNLLNSRDASGKYLFSGSQGDTQPFV-RNPDGTYSYNGDEGQ--REVQIASSTFIAISDNGK 180
Cdd:PRK12806 106 SSDRASIQSEISQLKSELERIAQNTEFNGQRILDGSFSGASFQVgANSNQTINFSIGSIKasSIGGIATATGTEVAGAAA 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  181 ILFESGS------------NANRVSTGKDAAGPDASGNPSDSSISLGLvtdkeaydTVFPSSTPPLASDGVGIHFTDAKN 248
Cdd:PRK12806 186 TDITIAIgggaatsinssaNFTGALNGQDATSAYAKAAAINDAGIGGL--------SVTASTSGTQAVGAIGGTAGDTYN 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  249 YVVYDLkTIPPGYDWSTSDPNPP-------------SFATLASGKIDDNAQTSDFITF----GGVKVQIDGEPQGGDTFS 311
Cdd:PRK12806 258 LTINGV-AIYTNLDVATALTNSDlrdaingvsnqtgVVASLNGGNMTLTAADGRNITVtesgTGFTAGTDGLTVTGGAFD 336

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284  312 IKRQ-----PDQEKRSLLNTVSDL-RKALLSAEDTPAGNLAIRDAVGV--AISNLDSSNSQILTGQGRIGARMNVAESTE 383
Cdd:PRK12806 337 GALRgtlsiSAVDTIAIGGTVANIgLSANISKDTVGIDSLDVSTASGAqtAIKRIDAALNSVNSNRANMGALQNRFESTI 416

                        410       420       430
                 ....*....|....*....|....*....|....*...
gi 15596284  384 TFIDDVTLVNTAVISQIQDLDYPEALSRLTLQSTIMDA 421
Cdd:PRK12806 417 ANLQNVSDNLSAARSRIQDADYAAEMASLTKNQILQQA 454
PRK12807 PRK12807
flagellin; Provisional
 1-153 7.55e-07

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 50.59  E-value: 7.55e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284    1 MRISTIQAFNNSVSGISRNYADLTRTQAEISAGKRLLTPADDPVG-AVRLLQLNQEQALNSQYKSGiTAAKNSLQQEETI 79
Cdd:PRK12807   1 MRINTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGlAIATRMRARQSGLEKASQNT-QDGMSLIRTAESA 79

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15596284   80 LNSVGTVIHRIREIAVQAGNGGLDASDKNALATELAQREDELLNLLNSRDASGKYLFSGSQGDTQPFVRNPDGT 153
Cdd:PRK12807  80 MNSVSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLLAGTGAVTIGSTSISGAE 153
PRK08869 PRK08869
polar flagellin E;
21-146 1.42e-05

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 46.85  E-value: 1.42e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284   21 ADLTRTQAEISAGKRLLTPADDPVGavrlLQLNQEqaLNSQYKSGITAAKNS------LQQEETILNSVGTVIHRIREIA 94
Cdd:PRK08869  22 SALSQSMERLSSGKRINSAKDDAAG----LQISNR--LTTQIRGLDVAVRNAndgisiAQTAEGAMNETTNILQRMRDLS 95

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 15596284   95 VQAGNGGLDASDKNALATELAQREDELLNLLNSRDASGKYLFSGSQGdTQPF 146
Cdd:PRK08869  96 LQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFG-TKSF 146
PRK12805 PRK12805
FliC/FljB family flagellin;
16-121 4.46e-05

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 45.25  E-value: 4.46e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284   16 ISRNYADLTRTQAEISAGKRLLTPADDPVGAVRLLQLNQEQALNSQYKSGITAAKNSLQQEETILNSVGTVIHRIREIAV 95
Cdd:PRK12805  16 LRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALSSMSSILQRMRQLAV 95

                         90       100
                 ....*....|....*....|....*.
gi 15596284   96 QAGNGGLDASDKNALATELAQREDEL 121
Cdd:PRK12805  96 QSSNGSFSDEDRKQYTAEFGSLIKEL 121
flgL PRK08913
flagellin;
1-145 3.38e-04

flagellin;


Pssm-ID: 236349 [Multi-domain]  Cd Length: 301  Bit Score: 42.46  E-value: 3.38e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284    1 MRISTIQAFNNSVSGISRNYADLTRTQAEISAGkrLLTPADDPVGAVRLLQLN-QEQALNSQ-YKSGITAAKNSLQQEET 78
Cdd:PRK08913   3 MRVATFANSSQLIAAALRTQQTMASLQIQESSG--LKSESFAGLGADAQQAVNlQVSVTRAQsYIDAATLAQSKVQVMYS 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15596284   79 ILNSVGTVIHRIREIAVQAGNGglDASDKNALATELAQREDELLNLLNSRDaSGKYLFSGSQGDTQP 145
Cdd:PRK08913  81 AVGQIADLAQQLRSSLSAASTG--TSTDATSAAASAQQALTQLATLLNTQY-GGQYVFAGADTTTAP 144
PRK06819 PRK06819
FliC/FljB family flagellin;
11-121 3.50e-04

FliC/FljB family flagellin;


Pssm-ID: 235867 [Multi-domain]  Cd Length: 376  Bit Score: 42.46  E-value: 3.50e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284   11 NSVSGISRNyaDLTRTQA-------EISAGKRLLTPADDPVGavrllqlnqeQALNSQYKSGI----TAAKN-----SLQ 74
Cdd:PRK06819   8 NSLSLLTQN--NLNKSQSslgtaieRLSSGLRINSAKDDAAG----------QAIANRFTSNIkgltQAARNandgiSIA 75

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 15596284   75 QE-ETILNSVGTVIHRIREIAVQAGNGGLDASDKNALATELAQREDEL 121
Cdd:PRK06819  76 QTtEGALNEINNNLQRVRELTVQAQNGSNSSSDLDSIQDEISQRLAEI 123
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 355-438 5.55e-04

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 38.85  E-value: 5.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596284   355 ISNLDSSNSQILTGQGRIGARMNVAESTETFIDDVTLVNTAVISQIQDLDYPEALSRLTLQSTIMDAAQQSFVKIRGL-- 432
Cdd:pfam00700   1 LDLIDEAITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQANQLpq 80


                  ....*.
gi 15596284   433 SLFNYL 438
Cdd:pfam00700  81 SLLNLL 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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