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Conserved domains on  [gi|15596278|ref|NP_249772|]
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flagellar basal body rod protein FlgF [Pseudomonas aeruginosa PAO1]

Protein Classification

flagellar basal body rod protein FlgF( domain architecture ID 11486070)

flagellar basal body rod protein FlgF is a component of the proximal portion of the basal body central rod of flagellar organelles

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 1-249 2.20e-150

flagellar basal body rod protein FlgF; Reviewed


:

Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 418.88  E-value: 2.20e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278    1 MDKMLYVSMSGASQNTLAMRAHANNLANISTSGFRRDFEQARSMQVFGDSFPARVFAMSERPGTDFSHGSLQETGNELDI 80
Cdd:PRK12640   1 MDRALYTAMSGASQNLNQQAVVANNLANASTPGFRADLAQARAVPVFGEGLPTRVFALASTPGADFSPGPLQTTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278   81 AIDGDGFVAVQAPDGSEAYVRTAGMHIDALGMLRTGDGLPVLGNGGPIAVPPEEKVEIGQDGTISIRALGENPNVVAVVD 160
Cdd:PRK12640  81 ALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLRTANGLPVLGDGGPIAVPPGAKITIGADGTISALPPGDPPNAVAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278  161 RIKLVNPNLKQMEKGTDGLLHykPQPGEQAPlADANVKVVSGFLESSNVNAVEEMTAILSLSRQFELHVKMMRTAEDDSA 240
Cdd:PRK12640 161 RLKLVNPPAAQLTRGDDGLFR--TTDGAPAP-ADPTVRVMSGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADENAQ 237


                 ....*....
gi 15596278  241 AMARVLQIS 249
Cdd:PRK12640 238 AANQLLRMS 246
 
Name Accession Description Interval E-value
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 1-249 2.20e-150

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 418.88  E-value: 2.20e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278    1 MDKMLYVSMSGASQNTLAMRAHANNLANISTSGFRRDFEQARSMQVFGDSFPARVFAMSERPGTDFSHGSLQETGNELDI 80
Cdd:PRK12640   1 MDRALYTAMSGASQNLNQQAVVANNLANASTPGFRADLAQARAVPVFGEGLPTRVFALASTPGADFSPGPLQTTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278   81 AIDGDGFVAVQAPDGSEAYVRTAGMHIDALGMLRTGDGLPVLGNGGPIAVPPEEKVEIGQDGTISIRALGENPNVVAVVD 160
Cdd:PRK12640  81 ALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLRTANGLPVLGDGGPIAVPPGAKITIGADGTISALPPGDPPNAVAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278  161 RIKLVNPNLKQMEKGTDGLLHykPQPGEQAPlADANVKVVSGFLESSNVNAVEEMTAILSLSRQFELHVKMMRTAEDDSA 240
Cdd:PRK12640 161 RLKLVNPPAAQLTRGDDGLFR--TTDGAPAP-ADPTVRVMSGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADENAQ 237


                 ....*....
gi 15596278  241 AMARVLQIS 249
Cdd:PRK12640 238 AANQLLRMS 246
FlgF COG4787
Flagellar basal body rod protein FlgF [Cell motility];
1-249 1.11e-143

Flagellar basal body rod protein FlgF [Cell motility];


Pssm-ID: 443817 [Multi-domain]  Cd Length: 246  Bit Score: 401.82  E-value: 1.11e-143
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278   1 MDKMLYVSMSGASQNTLAMRAHANNLANISTSGFRRDFEQARSMQVFGDSFPARVFAMSERPGTDFSHGSLQETGNELDI 80
Cdd:COG4787   1 MDRLIYTAMSGAKQTLEAQAVTANNLANASTTGFRADLEAARAVPVQGEGLPTRAFAVTETPGTDFSPGPLQQTGRPLDV 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278  81 AIDGDGFVAVQAPDGSEAYVRTAGMHIDALGMLRTGDGLPVLGNGGPIAVPPEEKVEIGQDGTISIRALGENPNVVAVVD 160
Cdd:COG4787  81 AIQGDGWLAVQAPDGSEAYTRAGDLQVDANGQLVTGNGLPVLGDGGPITIPPGAKVTIGADGTISIVPAGGPPNALAEVG 160

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278 161 RIKLVNPNLKQMEKGTDGLLHykPQPGEQAPlADANVKVVSGFLESSNVNAVEEMTAILSLSRQFELHVKMMRTAEDDSA 240
Cdd:COG4787 161 RLKLVNPDPAQLVKGDDGLFR--LKDGGPLP-ADPNVRVVSGALEGSNVNAVEEMVSMISLARQFEMQMKMMKTADENDQ 237


                ....*....
gi 15596278 241 AMARVLQIS 249
Cdd:COG4787 238 AANQLLRLS 246
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 3-226 2.03e-66

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 205.56  E-value: 2.03e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278     3 KMLYVSMSGASQNTLAMRAHANNLANISTSGFRRDFEQARSM---QVFGDSfPARVFAMSERPGTDFSHGSLQETGNELD 79
Cdd:TIGR03506   1 MALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLlsqSVSGSG-QVGGGVRTSGVATDFSQGSLQSTGNSLD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278    80 IAIDGDGFVAVQAPDGSEAYVRTAGMHIDALGMLRTGDGLPVL-GNGGPIAVPP-EEKVEIGQDGTISIRALGENPNVVA 157
Cdd:TIGR03506  80 LAISGDGFFVVQTPDGSEAYTRAGSFKLDADGYLVTSDGYPLLdWGGGPITLPPdAGSVSIGEDGTVSATYSNGQTVELG 159

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15596278   158 vvdRIKLVN-PNLKQMEKGTDGLLHYKPQPGEQ---APLADANVKVVSGFLESSNVNAVEEMTAILSLSRQFE 226
Cdd:TIGR03506 160 ---QIALANfPNPDGLRKEGGNLYSATPGSGAAlvgAPGTGGFGTLVSGALEGSNVDLAEELVNMISAQRAYQ 229
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 171-244 1.92e-18

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 76.92  E-value: 1.92e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15596278   171 QMEKGTDGLlhYKPQPGEQAPLADANVKVVSGFLESSNVNAVEEMTAILSLSRQFELHVKMMRTAEDDSAAMAR 244
Cdd:pfam06429   2 GLEKGGDNL--FRETDGAPILGAGADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQ 73
 
Name Accession Description Interval E-value
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 1-249 2.20e-150

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 418.88  E-value: 2.20e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278    1 MDKMLYVSMSGASQNTLAMRAHANNLANISTSGFRRDFEQARSMQVFGDSFPARVFAMSERPGTDFSHGSLQETGNELDI 80
Cdd:PRK12640   1 MDRALYTAMSGASQNLNQQAVVANNLANASTPGFRADLAQARAVPVFGEGLPTRVFALASTPGADFSPGPLQTTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278   81 AIDGDGFVAVQAPDGSEAYVRTAGMHIDALGMLRTGDGLPVLGNGGPIAVPPEEKVEIGQDGTISIRALGENPNVVAVVD 160
Cdd:PRK12640  81 ALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLRTANGLPVLGDGGPIAVPPGAKITIGADGTISALPPGDPPNAVAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278  161 RIKLVNPNLKQMEKGTDGLLHykPQPGEQAPlADANVKVVSGFLESSNVNAVEEMTAILSLSRQFELHVKMMRTAEDDSA 240
Cdd:PRK12640 161 RLKLVNPPAAQLTRGDDGLFR--TTDGAPAP-ADPTVRVMSGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADENAQ 237


                 ....*....
gi 15596278  241 AMARVLQIS 249
Cdd:PRK12640 238 AANQLLRMS 246
FlgF COG4787
Flagellar basal body rod protein FlgF [Cell motility];
1-249 1.11e-143

Flagellar basal body rod protein FlgF [Cell motility];


Pssm-ID: 443817 [Multi-domain]  Cd Length: 246  Bit Score: 401.82  E-value: 1.11e-143
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278   1 MDKMLYVSMSGASQNTLAMRAHANNLANISTSGFRRDFEQARSMQVFGDSFPARVFAMSERPGTDFSHGSLQETGNELDI 80
Cdd:COG4787   1 MDRLIYTAMSGAKQTLEAQAVTANNLANASTTGFRADLEAARAVPVQGEGLPTRAFAVTETPGTDFSPGPLQQTGRPLDV 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278  81 AIDGDGFVAVQAPDGSEAYVRTAGMHIDALGMLRTGDGLPVLGNGGPIAVPPEEKVEIGQDGTISIRALGENPNVVAVVD 160
Cdd:COG4787  81 AIQGDGWLAVQAPDGSEAYTRAGDLQVDANGQLVTGNGLPVLGDGGPITIPPGAKVTIGADGTISIVPAGGPPNALAEVG 160

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278 161 RIKLVNPNLKQMEKGTDGLLHykPQPGEQAPlADANVKVVSGFLESSNVNAVEEMTAILSLSRQFELHVKMMRTAEDDSA 240
Cdd:COG4787 161 RLKLVNPDPAQLVKGDDGLFR--LKDGGPLP-ADPNVRVVSGALEGSNVNAVEEMVSMISLARQFEMQMKMMKTADENDQ 237


                ....*....
gi 15596278 241 AMARVLQIS 249
Cdd:COG4787 238 AANQLLRLS 246
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 3-226 2.03e-66

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 205.56  E-value: 2.03e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278     3 KMLYVSMSGASQNTLAMRAHANNLANISTSGFRRDFEQARSM---QVFGDSfPARVFAMSERPGTDFSHGSLQETGNELD 79
Cdd:TIGR03506   1 MALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLlsqSVSGSG-QVGGGVRTSGVATDFSQGSLQSTGNSLD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278    80 IAIDGDGFVAVQAPDGSEAYVRTAGMHIDALGMLRTGDGLPVL-GNGGPIAVPP-EEKVEIGQDGTISIRALGENPNVVA 157
Cdd:TIGR03506  80 LAISGDGFFVVQTPDGSEAYTRAGSFKLDADGYLVTSDGYPLLdWGGGPITLPPdAGSVSIGEDGTVSATYSNGQTVELG 159

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15596278   158 vvdRIKLVN-PNLKQMEKGTDGLLHYKPQPGEQ---APLADANVKVVSGFLESSNVNAVEEMTAILSLSRQFE 226
Cdd:TIGR03506 160 ---QIALANfPNPDGLRKEGGNLYSATPGSGAAlvgAPGTGGFGTLVSGALEGSNVDLAEELVNMISAQRAYQ 229
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
5-243 1.82e-58

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 186.17  E-value: 1.82e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278   5 LYVSMSGASQNTLAMRAHANNLANISTSGFRRD---FEQARSMQVFGDSFPARVFAMSE---------RPG---TDFSHG 69
Cdd:COG4786   1 LYTAASGMLAQQTRLDVISNNLANVNTTGFKRDravFEDLLYQLIRRPGAPSSQGTQTPvglqlgtgvRVAatqTDFTQG 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278  70 SLQETGNELDIAIDGDGFVAVQAPDGSEAYVRTAGMHIDALGMLRTGDGLPVLGNGGPIAVPPE-EKVEIGQDGTISIRA 148
Cdd:COG4786  81 SLQQTGNPLDLAIEGDGFFQVQTPDGETAYTRDGSFQLDADGQLVTSDGYPVLPENGPITIPEDaTSITISEDGTVSVTL 160

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278 149 LGENPNvvaVVDRIKLVN-PNLKQMEKGTDGLLHYKP---QPGEQAPLADANVKVVSGFLESSNVNAVEEMTAILSLSRQ 224
Cdd:COG4786 161 ADGDGQ---QVGQLGLVDfANPAGLEKVGDNLFRETAasgAPIVGTPGEDGLGTLRQGYLEGSNVDVVEEMVDMIEAQRA 237

                       250
                ....*....|....*....
gi 15596278 225 FELHVKMMRTAeDDSAAMA 243
Cdd:COG4786 238 YEANSKVIQTA-DEMLGKA 255
flgF PRK12643
flagellar basal body rod protein FlgF; Reviewed
 1-209 2.22e-46

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 139117 [Multi-domain]  Cd Length: 209  Bit Score: 153.46  E-value: 2.22e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278    1 MDKMLYVSMSGASQNTLAMRAHANNLANISTSGFRRDFEQARSMQVFGDSFPARVFAMSERPGTDFSHGSLQETGNELDI 80
Cdd:PRK12643   1 MDHAIYTAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAVPIDGPSLATRTMVTTSTPGVDISQGTMNFSGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278   81 AIDGDGFVAVQAPDGSEAYVRTAGMHIDALGMLrTGDGLPVLGNGGPIAVPPEEKVEIGQDGTISIRALGENPNVVAVVD 160
Cdd:PRK12643  81 ALQQDGYLAVQLPDGSEAYTRNGNIQISANGQM-TVQGYPLMGDNGPIDVPPQAAVTIAADGTISALNAGDSPNTIAQLG 159

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 15596278  161 RIKLVNPNLKQMEKGTDGLLHYKPQP----GEQAPlADANVKvvSGFLESSNV 209
Cdd:PRK12643 160 QIKRVQATAGEMMHGDDGLFHLTPETqqarGAQLP-NDPLVK--PGEREHQWL 209
flgF PRK12689
flagellar basal-body rod protein FlgF;
1-237 4.50e-46

flagellar basal-body rod protein FlgF;


Pssm-ID: 183684 [Multi-domain]  Cd Length: 253  Bit Score: 154.14  E-value: 4.50e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278    1 MDKMLYVSMSgaSQNTLA--MRAHANNLANISTSGFRRD---FEQARSMQVFGDSFPA---RVFAMSERpGT--DFSHGS 70
Cdd:PRK12689   1 MQNALLVGLS--RQMALErqLDVVANNVANVNTNGFKARsslFQEYLMPGAHEDNFQRpdrRVSYVQDR-GTplDLSQGP 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278   71 LQETGNELDIAIDGDGFVAVQAPDGsEAYVRTAGMHIDALGMLRTGDGLPVLGNGGPIAVPPEEK-VEIGQDGTISIraL 149
Cdd:PRK12689  78 LEQTKNPLDVAIDGDAFLAVQTPQG-ERYTRDGALEINAQGQLVTSDGYPVLGTGGPITFQPTDTgIAISPDGTVSV--N 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278  150 GENPNVVAVVDRIKLVN-PNLKQMEKGTDGLlhYKPQPGEQAPLADANVKvvSGFLESSNVNAVEEMTAILSLSRQFELH 228
Cdd:PRK12689 155 EGTATTDSIRGKLRLVTfANPQALKKEGANL--YAATAPARPADTKARVE--QGYIERSNVNPVLEMTRMMEVNRTYTQV 230


                 ....*....
gi 15596278  229 VKMMRTAED 237
Cdd:PRK12689 231 SSMLQQQSD 239
flgG_G_neg TIGR02488
flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the ...
 5-237 8.14e-38

flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131541 [Multi-domain]  Cd Length: 259  Bit Score: 132.86  E-value: 8.14e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278     5 LYVSMSGASQNTLAMRAHANNLANISTSGFRRD---FE-------QARSMQVFGDSFP----------ARVFAMSerpgT 64
Cdd:TIGR02488   2 LWTAATGMNAQQTNMDVISNNLANVNTTGFKKDraeFEdllyqteRQPGAQSSEQQTIlpvgvqvglgVRVVATQ----K 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278    65 DFSHGSLQETGNELDIAIDGDGFVAVQAPDGSEAYVRTAGMHIDALGMLRTGDGLPVLgngGPIAVPPE-EKVEIGQDGT 143
Cdd:TIGR02488  78 LFTQGSLQNTGNDLDLAIEGEGFFQVLMPDGTTAYTRDGAFKINAEGQLVTSNGYPLQ---PEITIPENaTSITVGSDGE 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278   144 ISIR-ALGENPNVVAVVDRIKLVNP-NLKQM------EKGTDGllhykpQPGEQAPLADANVKVVSGFLESSNVNAVEEM 215
Cdd:TIGR02488 155 VSVRqGGQTEPQEVGQITLATFINPaGLEAVgenlfrETPASG------PPQIGTPGLDGFGKLRQGFLEASNVNVVQEM 228

                         250       260
                  ....*....|....*....|..
gi 15596278   216 TAILSLSRQFELHVKMMRTAED 237
Cdd:TIGR02488 229 VDMITAQRAYEMNSKAIQASDQ 250
flgG PRK12693
flagellar basal body rod protein FlgG; Provisional
 1-237 7.60e-36

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183687 [Multi-domain]  Cd Length: 261  Bit Score: 127.67  E-value: 7.60e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278    1 MDKMLYVSMSGASQNTLAMRAHANNLANISTSGFRRD---FE--------QARSMQVFGDSFPARV-FAMSERPGT---D 65
Cdd:PRK12693   1 MIRALWIAKTGLDAQQTNIDVISNNLANVNTTGFKKSravFEdllyqtirQPGAQSSQNTTLPSGLqVGTGVRPVAtqkI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278   66 FSHGSLQETGNELDIAIDGDGFVAVQAPDGSEAYVRTAGMHIDALGMLRTGDGLPVLGNggpIAVPPE-EKVEIGQDGTI 144
Cdd:PRK12693  81 FTQGNLQQTGNSLDVAIEGQGFFQVQLPDGTIAYTRDGSFKLDQDGQLVTSGGYPLQPE---ITIPENaTSITIGTDGTV 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278  145 SIRALGEN-PNVVAVVDRIKLVNP--------NLKQmEKGTDGllhykpQPGEQAPLADANVKVVSGFLESSNVNAVEEM 215
Cdd:PRK12693 158 SVTQAGQAaPQVVGQITLTDFINPaglesigeNLYL-ETAASG------APIEGTPGLNGLGTLRQGFLETSNVNVVEEL 230

                        250       260
                 ....*....|....*....|..
gi 15596278  216 TAILSLSRQFELHVKMMRTAED 237
Cdd:PRK12693 231 VNMITGQRAYEMNSKAISTADQ 252
flgF PRK12641
flagellar basal-body rod protein FlgF;
1-249 2.84e-34

flagellar basal-body rod protein FlgF;


Pssm-ID: 105809 [Multi-domain]  Cd Length: 252  Bit Score: 123.51  E-value: 2.84e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278    1 MDKMLYVSMSGASQNTLAMRAHANNLANISTSGFRRDFE---QARSMQVFGDSFPARVfamseRPGTDFSHGSLQETGNE 77
Cdd:PRK12641   1 MENSIYKSMIAANKLLEKQAIIANNLANISTTGFKEKFIlaiQNHNVKNLYNSDKKIT-----KEYYNLSPGTLRYTGRN 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278   78 LDIAIDGDGFVAVQAPDGSEAYVRTAGMHIDALGMLRTGDGlPVLGNGGPIAVPPEEKVEIGQDGTISIRALGENPNVVA 157
Cdd:PRK12641  76 LDLFIKDNGWLTIKDTNGQEAYTKNGHLKINSKRKLTVQNN-EVIGNNGNIIIPKNINLKISSNGVITSIKNNHKHIVET 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278  158 VVDRIKLVNPNLKQMEKGTDGLLHYKPQPG-----EQAPLADANVKVVSGFLESSNVNAVEEMTAILSLSRQFELHVKMM 232
Cdd:PRK12641 155 KIGSLKLVQLPSQDLIQKENGLFYLKKNNEinkkhTKNIKHSSKIRVQSGMLEESNVNASKNMIEMISNARQFEMQMKII 234

                        250
                 ....*....|....*..
gi 15596278  233 RTAEDDSAAMARVLQIS 249
Cdd:PRK12641 235 SMCDQNTEYANQLININ 251
flgG PRK12817
flagellar basal body rod protein FlgG; Reviewed
 1-237 9.56e-34

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183767 [Multi-domain]  Cd Length: 260  Bit Score: 122.49  E-value: 9.56e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278    1 MDKMLYVSMSG--ASQNTLamRAHANNLANISTSGFRRdfEQARSMQVFGDSFPARVFAMSERP----GT---------D 65
Cdd:PRK12817   1 MLRAFWNSKSGmnAQQEKL--DSISNNLANVNTTGYKR--EDVSFSDLVYETLDRKGYPTNDKPeiitGTgvkatnwirD 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278   66 FSHGSLQETGNELDIAIDGDGFVAVQAPDGSEAYVRTAGMHIDALGML--RTGDGLPVLGNGGPIAVPP-----EEKVEI 138
Cdd:PRK12817  77 NQQGNLLTTGNKTDLAIDGEGFFRVIMADGTYAYTRAGNFNIDSNGMLvdDNGNRLEIQLEAGVGINNRntgfdSNNFTV 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278  139 GQDGTISIRalgENPNVVAVVDRIKLVNPnlkqmeKGTDGLLH-----YKPQPGEQaPLADANVKVVSGFLESSNVNAVE 213
Cdd:PRK12817 157 DEDGGISVK---NVDGQNKKVGKINIYNA------VGNDAFISigdnlYVPSDGVQ-VFLNNDVDILQGYLENSNVDLGK 226

                        250       260
                 ....*....|....*....|....
gi 15596278  214 EMTAILSLSRQFELHVKMMRTAED 237
Cdd:PRK12817 227 EMTDMIITQRAFQLSSKGIKTADE 250
flgF PRK12690
flagellar hook-basal body complex protein;
1-238 1.18e-33

flagellar hook-basal body complex protein;


Pssm-ID: 183685 [Multi-domain]  Cd Length: 238  Bit Score: 121.71  E-value: 1.18e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278    1 MDKMLYVSMSGASQNTLAMRAHANNLANISTSGFRRD---FeqarSMQVFGDSFPARVFAMSERPG--TDFSHGSLQETG 75
Cdd:PRK12690   1 MDNAGYTTLTRQSGLMREMQVVANNIANASTTGFRREglvF----SEYVKSLDSGEASLSMARASGrqTDLEQGGLTQTG 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278   76 NELDIAIDGDGFVAVQAPDGsEAYVRTAGMHIDALGMLRTGDGLPVLGNGG-PIAVPPE-EKVEIGQDGTISIralgeNP 153
Cdd:PRK12690  77 GQFDFAIEGEGFFMVETPQG-ERLTRAGSFTPNAEGELVDPDGNRLLDAGGaPIFIPPDaRSVAVGADGTLSA-----DG 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278  154 NVVAVVDRIKLVNPNLKQMEKGTdgllhYKPQPGEQAPLADAnvKVVSGFLESSNVNAVEEMTAILSLSRQFELHVKMMR 233
Cdd:PRK12690 151 QPLGQIGLYQPTDPLGLRREGGT-----RFRAEGGVEPAEGA--RLLQGFLEGSNVNPVSEIARMIEVQRAYELGQSFLD 223


                 ....*
gi 15596278  234 tAEDD 238
Cdd:PRK12690 224 -REDE 227
flgF PRK12642
flagellar basal-body rod protein FlgF;
1-237 6.27e-33

flagellar basal-body rod protein FlgF;


Pssm-ID: 237153 [Multi-domain]  Cd Length: 241  Bit Score: 119.77  E-value: 6.27e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278    1 MDKMLYVSMSgaSQNTLAMR--AHANNLANISTSGFRRD---FEQarsmqVFGDSFPARVFAMSerPGTDF---SHGSLQ 72
Cdd:PRK12642   1 MQSGLYVALS--SQMALEKRldTIADNVANVNTVGFRATevkFDT-----VVSDTASKKVAFVS--QGKSYlstEAGPLT 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278   73 ETGNELDIAIDGDGFVAVQAPDGSeAYVRTAGMHIDALGMLRTGDGLPVLGNGG-PIAVPPEE-KVEIGQDGTISiralg 150
Cdd:PRK12642  72 KTGNPLDFAVKGDAWFSFDTPAGQ-VYTRDGRFTMTSTGELVSVTGYPVLDAGGaPIQLNPGGgEPTIGADGAIY----- 145

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278  151 ENPNVVAVvdrIKLVN--PNLKQMEKGTDGLLhykPQPGEQAPLADANVKVVSGFLESSNVNAVEEMTAILSLSRQFELH 228
Cdd:PRK12642 146 QNGVQVGA---IGLFEidADAGLLRYGNSGVI---PDKPPQPVVDRNSVGVVQGYLEGSNVNAMTEMTQLISVSRAFESV 219


                 ....*....
gi 15596278  229 VKMMRTAED 237
Cdd:PRK12642 220 SSLMRQSES 228
flgG PRK12636
flagellar basal body rod protein FlgG; Provisional
 1-237 5.18e-31

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183640 [Multi-domain]  Cd Length: 263  Bit Score: 115.24  E-value: 5.18e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278    1 MDKMLYVSMSGASQNTLAMRAHANNLANISTSGF---RRDFEQARSMQVFGDSFPArvfamSERPGTD------------ 65
Cdd:PRK12636   1 MLRSMYSGISGMKNFQTKLDVIGNNIANVNTYGFkksRVTFKDMVSQTISGASGPT-----ANRGGVNskqvglgsqlga 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278   66 ----FSHGSLQETGNELDIAIDGDGFVAVQAPDGSeAYVRTAGMHIDALGMLRTGDGLPVLG-NGGPIAVPPE-EKVEIG 139
Cdd:PRK12636  76 idtiHTQGSLQTTGRPLDLAISGDGFFRVGDGDNT-AYTRAGNFYLDNEGNIVNADGLYLLGmNGGRIQIPTDaQSFSIG 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278  140 QDGTISIRalgENPNVVAVVDRIKLVN-PNLKQMEKGTDGLLHYKPQPGEQ---APLADANVKVVSGFLESSNVNAVEEM 215
Cdd:PRK12636 155 ADGTVSYV---DAGGELQTAGQIGLATfANPDGLEKAGDNLYRETLNSGTPsavVPGEGGTGKIVSGALEMSNVDLAEEF 231

                        250       260
                 ....*....|....*....|..
gi 15596278  216 TAILSLSRQFELHVKMMRTAED 237
Cdd:PRK12636 232 TEMIVAQRGFQANTRIITTSDE 253
flgG PRK12816
flagellar basal body rod protein FlgG; Reviewed
 1-237 2.63e-28

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183766 [Multi-domain]  Cd Length: 264  Bit Score: 108.36  E-value: 2.63e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278    1 MDKMLYVSMSGASQNTLAMRAHANNLANISTSGF---RRDFEQARSMQVFGDSFPARvfAMSERP-------GTD----- 65
Cdd:PRK12816   1 MMRSLWTAASGMNAQQFNIDTIANNLANVNTTGFkkiRAEFEDLIYQTQRRAGTPAT--EDTVTPlgvqvghGVKvaatq 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278   66 --FSHGSLQETGNELDIAIDGDGFVAVQAPDGSEAYVRTAGMHIDALGMLRTGDGLPVLgnggPIAVPPEEKVE----IG 139
Cdd:PRK12816  79 rlFEQGSLQATGNKLDVAIEGEGFFKILMPDGTYAYTRDGSFKIDANGQLVTSNGYRLL----PEIIFPENYILnsitIS 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278  140 QDGTISIRALGEN-PNVVAVVDRIKLVNPNLKQMEKgtDGLLHYKPQPGEQ---APLADANVKVVSGFLESSNVNAVEEM 215
Cdd:PRK12816 155 EEGIVSVKVGEDNdPIELGQIELYRFVNPAGLSAIG--KNLFKETIASGQEipgIPGSEGFGRVLQGFLEMSNVSIVEEM 232

                        250       260
                 ....*....|....*....|..
gi 15596278  216 TAILSLSRQFELHVKMMRTAED 237
Cdd:PRK12816 233 VTMIVAQRAYEINSKAIQTSDN 254
flgG PRK12818
flagellar basal body rod protein FlgG; Reviewed
 1-226 4.65e-24

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183768 [Multi-domain]  Cd Length: 256  Bit Score: 96.69  E-value: 4.65e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278    1 MDKMLYVSMSG-----ASQNTLAmrahaNNLANISTSGFRRD------FE----QARSMQVFGDSFPARVFAMSerPG-- 63
Cdd:PRK12818   1 MIRGLYTAVSGmitleAKQDVIT-----NNLANVNTVGYKSDnlafksFEdvliENYDKKVGNKNVKNIIGGLS--MGsk 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278   64 -----TDFSHGSLQETGNELDIAIDGDGFVAVQAPDGSEAYVRTAGMHIDALGMLRTGDGLPVLGNG------GPIAVPp 132
Cdd:PRK12818  74 idevnTLFTQGIIKSTDKPTDFAIQGRGFFTVERNAGNNYYTRDGHFHVDTQGYLVNDSGYYVLGRNnatgarEPINVG- 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278  133 EEKVEIGQDGTISIRalGENPNVVAVVD-----RIKLVNPNLKQMEKgtdgllhykpqpgeqaPLADANVKVVSGFLESS 207
Cdd:PRK12818 153 NGKFSTDADGNISLD--GNASYKFNVADfndynSLKKIGDNLYTGNN----------------PQNINGAIVRQNSLEKS 214

                        250
                 ....*....|....*....
gi 15596278  208 NVNAVEEMTAILSLSRQFE 226
Cdd:PRK12818 215 NVNVTNEMVNMMTTMRSFE 233
flgF TIGR02490
flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several ...
 128-226 9.41e-22

flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274160 [Multi-domain]  Cd Length: 89  Bit Score: 86.14  E-value: 9.41e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278   128 IAVPPEEKVEIGQDGTISiralgENPNVVavvDRIKLVNP-NLKQMEKGTDGLlhYKPQPGEQAPlADANVKVVSGFLES 206
Cdd:TIGR02490   1 IVLPPDGDITIGADGTIS-----QDGEEV---GRLGLVNFdNPNQLQREGDGL--FRATGGGPAP-ADSNVRVVQGYLEG 69

                          90       100
                  ....*....|....*....|
gi 15596278   207 SNVNAVEEMTAILSLSRQFE 226
Cdd:TIGR02490  70 SNVNAVSEMVDMIEAQRAYE 89
flgG PRK12692
flagellar basal body rod protein FlgG; Reviewed
 3-237 2.37e-20

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 139158 [Multi-domain]  Cd Length: 262  Bit Score: 86.82  E-value: 2.37e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278    3 KMLYVSMSGASQNTLAMRAHANNLANISTSGFRRD-------FEQARSMQvfgdSFPARVFAMSERPGTDFS-------- 67
Cdd:PRK12692   2 RALAIAATGMSAQQLNLEVIANNIANLNTTGFKGAraeftdlLYQAERQQ----GVPNQAGQEAVPEGAMLGlgvraaai 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278   68 -----HGSLQETGNELDIAIDGDGFVAVQAPDGSEAYVRTAGMHIDALGMLRTGDGLPVlgngGPIAVPPEEKVE--IGQ 140
Cdd:PRK12692  78 rnlhrQGSLAQTGNQLDLAVNGRGYFQVTSPNGEIQYTRAGSFNKNAAGQLVTMEGYAV----DPAILIPQNTTQvtINE 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278  141 DGTISIRALGE-NPNVVAvvdRIKLVN-PNLKQMEKGTDGLlhYKPQPGEQAPL----ADANV-KVVSGFLESSNVNAVE 213
Cdd:PRK12692 154 SGQVFAKIDGQvAPQNLG---QLTLANfANESGLEPLGNGL--YRETPASGAPVvgnpGDVGFgKIQQGYLEGSNVDPVK 228

                        250       260
                 ....*....|....*....|....
gi 15596278  214 EMTAILSLSRQFELHVKMMRTAED 237
Cdd:PRK12692 229 EITSLITAQRAFEMNSKVIQAADE 252
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 171-244 1.92e-18

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 76.92  E-value: 1.92e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15596278   171 QMEKGTDGLlhYKPQPGEQAPLADANVKVVSGFLESSNVNAVEEMTAILSLSRQFELHVKMMRTAEDDSAAMAR 244
Cdd:pfam06429   2 GLEKGGDNL--FRETDGAPILGAGADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQ 73
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
5-123 6.27e-16

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 76.36  E-value: 6.27e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278   5 LYVSMSGASQNTLAMRAHANNLANISTSGFRR---DFEQ--ARSMQVFGDSFPA---RVFAMSerpgTDFSHGSLQETGN 76
Cdd:COG1749   5 FNTGVSGLNAASTALDVIGNNIANSNTVGFKSsraEFADlvAQSLSGANPTQVGggvRVASVA----QIFTQGSLQSTGN 80

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*..
gi 15596278  77 ELDIAIDGDGFVAVQAPDGSEAYVRTAGMHIDALGMLRTGDGLPVLG 123
Cdd:COG1749  81 ALDLAISGNGFFVVSDSGGQTYYTRAGSFSLDKDGYLVNSSGLYLQG 127
flgE PRK05682
flagellar hook protein FlgE; Validated
 3-130 2.96e-10

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 59.46  E-value: 2.96e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278    3 KMLYVSMSG--ASQNTLAMRAhaNNLANISTSGFRRdfeqarSMQVFGDsfparVFAMSERPG--------------TDF 66
Cdd:PRK05682   1 MSFNTAVSGlnAASNRLDVIG--NNIANANTTGFKS------SRAEFAD-----LYANSAGTNptqvgsgvkvagvaQQF 67

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278   67 SHGSLQETGNELDIAIDGDGFVAVQApDGSEAYVRtAGM-HIDALGMLRTGDGLPVLG-----NGGPIAV 130
Cdd:PRK05682  68 SQGSITSTGNSLDLAISGNGFFVVSN-GGNGFYTR-AGAfKLDKNGYLVNAAGYYLQGypadaDGGTPPT 135
flgE PRK06803
flagellar basal body protein FlaE;
7-118 1.12e-09

flagellar basal body protein FlaE;


Pssm-ID: 235862 [Multi-domain]  Cd Length: 402  Bit Score: 57.86  E-value: 1.12e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278    7 VSMSGASQNTLAMRAHANNLANISTSGFRRDFEQARSMQVFGDSFPARVFAMSErpgtDFS-HGSLQETGNELDIAIDGD 85
Cdd:PRK06803   5 IALSGLNATTQQLNTISNNIANSSTKGFKGSRTEFSSIYNGGQPGGVEVSSVSQ----NFSkDGSLTYTGRGLDLAISGG 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 15596278   86 GFVAVQAPDGSEAYVRtAGM-HIDALGMLRTGDG 118
Cdd:PRK06803  81 GFFVLKESDGDTAYTR-AGMfRSDVDGYLTDPQG 113
flgE PRK08425
flagellar hook protein FlgE; Validated
 1-123 9.62e-08

flagellar hook protein FlgE; Validated


Pssm-ID: 236263 [Multi-domain]  Cd Length: 731  Bit Score: 52.39  E-value: 9.62e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278    1 MDKMLYVSMSGASQNTLAMRAHANNLANISTSGF---RRDFEQARSMQV---------FGDSFParvfaMSERPGTD--- 65
Cdd:PRK08425   1 MMRSLWSGVSGLQAHQIAMDVEGNNIANVNTTGFkysRASFVDMLSQTKliatapkggLGGQND-----MQIGLGVGvss 75

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15596278   66 ----FSHGSLQETGNELDIAIDGDGFVAVqAPDG--SEAYVRTAGMHIDALGMLRTGDGLPVLG 123
Cdd:PRK08425  76 ttkiFSQGSIQNTDKNTDLAIQGDGFFIV-SPDGgtTRNYTRDGDFKFDAQGNFVNNGGYVVQG 138
flgG PRK12819
flagellar basal-body rod protein FlgG;
3-232 5.13e-07

flagellar basal-body rod protein FlgG;


Pssm-ID: 183769 [Multi-domain]  Cd Length: 257  Bit Score: 49.49  E-value: 5.13e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278    3 KMLYVSMSGASQNTLAMRAHANNLANISTSGFRrdFEQARSmQVF--------GDSFPARVFAM--SERPGT---DFSHG 69
Cdd:PRK12819   2 NGLYIGSMGMMNYMQRINVHSNNVANAQTTGFK--AENMTS-KVFdvqdtyrrGDGAVTNIGSVdyAVVPAAthvNLVQG 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278   70 SLQETGNELDIAID----GDGFVAVQAPDGSEAYVRTAGMHIDALGMLRTGDGLPVLG-NGGPIAVPPEEKVEIGQDGTI 144
Cdd:PRK12819  79 NIQMTNSDTDFFLDdgpaGTSSFFVTSKNGETFLTRDGSFTLNSDRYLQTASGAFVMGeNNERIRIPEGAKVAVQADGTL 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278  145 sIRALGENpNVVAVVDRIKLVNPNLKQMEKGtDGLLHYkpQPGEQAPLADANVKVVSGFLESSNVNAVEEMTAILSLSRQ 224
Cdd:PRK12819 159 -YDAVTQN-NIARLQTKTVSAEQNDRLVQRE-NKSFTL--AEGNIANLPNGQGIVKNGMLENSNVDMTKEMADLMTDQRM 233


                 ....*...
gi 15596278  225 FELHVKMM 232
Cdd:PRK12819 234 IQASQRVM 241
flgC PRK12628
flagellar basal body rod protein FlgC; Provisional
 170-248 8.45e-06

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 79089  Cd Length: 140  Bit Score: 44.45  E-value: 8.45e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278  170 KQMEKGT--DGLLHYKPQPGEQ----APLADANvkvvsGFLESSNVNAVEEMTAILSLSRQFELHVKMMRTAEDdsaAMA 243
Cdd:PRK12628  62 EQIKAGVklDGIYESDAEPHRRydpnSPIADKD-----GFVYTSNINYVEEMANIISASRSYQMNIELLNTTKQ---LMQ 133


                 ....*
gi 15596278  244 RVLQI 248
Cdd:PRK12628 134 RTLQL 138
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
191-248 1.77e-04

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 40.48  E-value: 1.77e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 15596278 191 PLADANvkvvsGFLESSNVNAVEEMTAILSLSRQFELHVKMMRTAEDdsaAMARVLQI 248
Cdd:COG1558  84 PDADAD-----GYVRYPNVNVVEEMVDMISASRSYEANVEVINTAKS---MLLKTLEI 133
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 191-248 7.70e-04

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 38.65  E-value: 7.70e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 15596278  191 PLADANvkvvsGFLESSNVNAVEEMTAILSLSRQFELHVKMMRTAEDdsaAMARVLQI 248
Cdd:PRK05681  83 PAADAK-----GYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKS---MMQKTLTI 132
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 191-248 2.23e-03

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 37.34  E-value: 2.23e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 15596278   191 PLADANvkvvsGFLESSNVNAVEEMTAILSLSRQFELHVKMMRTAEDdsaAMARVLQI 248
Cdd:TIGR01395  84 PDADAE-----GYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKS---MFLRTLEI 133
flgE PRK12637
flagellar hook protein FlgE; Provisional
 9-176 2.42e-03

flagellar hook protein FlgE; Provisional


Pssm-ID: 183641 [Multi-domain]  Cd Length: 473  Bit Score: 38.58  E-value: 2.42e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278    9 MSGASQNtlaMRAHANNLANISTSGFRRDfeQARSMQVFGDS---FPARVFAMSERpgtdFSHGSLQETGNELDIAID-G 84
Cdd:PRK12637  10 LNAASQN---LDVIGNNIANSGTVGFKSG--AASFADVYASSrvgLGVKVSAINQR----FTVGNISTTGGEYDMAIDgG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278   85 DGFVAVQAPDGSEAYVRTAGMHIDALGMLRTGDGLPVLG--NGGPIAVPPEEKVEIGQDGTISIRALGENPNVVAvvdRI 162
Cdd:PRK12637  81 KGFFRLTDQSGGVFYSRNGEFMVDKNFYIVNAQGFRLTGypAGGVGAQPVDLQLPQGNIAPQATSTAGLQTNLNA---NA 157

                        170
                 ....*....|....
gi 15596278  163 KLVNPNLKQMEKGT 176
Cdd:PRK12637 158 KVIDPNDTPAVDGT 171
Flg_bb_rod pfam00460
Flagella basal body rod protein;
5-34 2.88e-03

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 34.46  E-value: 2.88e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 15596278     5 LYVSMSGASQNTLAMRAHANNLANISTSGF 34
Cdd:pfam00460   1 LYTAVSALNAQQIRLDVIANNIANANTPGY 30
flgC PRK06802
flagellar basal body rod protein FlgC; Reviewed
 191-232 7.42e-03

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 180702  Cd Length: 141  Bit Score: 35.93  E-value: 7.42e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 15596278  191 PLADANvkvvsGFLESSNVNAVEEMTAILSLSRQFELHVKMM 232
Cdd:PRK06802  89 PLANPQ-----GYVFYPDVNVVEEMADMMSASRSFETNVEVL 125
flgC PRK12631
flagellar basal body rod protein FlgC; Provisional
 191-236 9.02e-03

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183636  Cd Length: 138  Bit Score: 35.70  E-value: 9.02e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 15596278  191 PLADANvkvvsGFLESSNVNAVEEMTAILSLSRQFELHVKMMRTAE 236
Cdd:PRK12631  87 PMADAD-----GFIYKPNVNVMEEMADMISASRSYQMNVQVAEAAK 127
DUF4175 pfam13779
Domain of unknown function (DUF4175);
78-161 9.52e-03

Domain of unknown function (DUF4175);


Pssm-ID: 463981 [Multi-domain]  Cd Length: 833  Bit Score: 36.89  E-value: 9.52e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596278    78 LDIAIDGDGfvAVQAPDGSEAYVRTAGMHIDALgMLRTGDGLPVLGNGGPIAVPPEEKVEIGQDGTISIRALGENP---N 154
Cdd:pfam13779 203 LTAGADAAA--ALTVPAGSTLTVRVTGLSGSAL-LEADVGGTAPLPFAAVDAGAREQRFTLTRSGTLTIRGGGGELrswT 279


                  ....*..
gi 15596278   155 VVAVVDR 161
Cdd:pfam13779 280 ITVIPDA 286
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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