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Conserved domains on  [gi|15595500|ref|NP_248994|]
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polyamine transporter PotH [Pseudomonas aeruginosa PAO1]

Protein Classification

ABC transporter permease( domain architecture ID 30)

ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters which generally bind type 2 PBPs

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TM_PBP2 super family cl00427
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 1-292 2.94e-136

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


The actual alignment was detected with superfamily member PRK10683:

Pssm-ID: 444901  Cd Length: 317  Bit Score: 387.91  E-value: 2.94e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500    1 MPTGRHAVIGVPFLWLFLFFLLPFAIVLKISLAEADVAIPPYTEIFAYADQQLQVLLNLGNYLMLTDDPLYIDAYLGSLK 80
Cdd:PRK10683  25 MKHGRKLVIALPYLWLILLFLLPFLIVFKISLAEMARAIPPYTDLMEWADGQLSITLNLGNFLQLTDDPLYFDAYLQSLQ 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500   81 MAFISTLICLLVGYPMAYAIARSSQSSQTVLLLLIMMPTWTAILIRVYAWMGILSNNGLLNSVLMGLGLISEPLTILNTN 160
Cdd:PRK10683 105 VAAISTLCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLLWLGVIDQPLTILHTN 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500  161 IAVYIGIVYSYLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVPLSKNGIIAGCMLVFIPAVGEFVIPELLGG 240
Cdd:PRK10683 185 LAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGG 264

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 15595500  241 PETLMIGKVLWQEFFNNRDWPVASALAVVMLAILIIPIILFNKNQAKELEGK 292
Cdd:PRK10683 265 PDSIMIGRVLWQEFFNNRDWPVASAVAIIMLLLLIVPIMWFHKHQQKSVGEH 316
 
Name Accession Description Interval E-value
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 1-292 2.94e-136

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 387.91  E-value: 2.94e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500    1 MPTGRHAVIGVPFLWLFLFFLLPFAIVLKISLAEADVAIPPYTEIFAYADQQLQVLLNLGNYLMLTDDPLYIDAYLGSLK 80
Cdd:PRK10683  25 MKHGRKLVIALPYLWLILLFLLPFLIVFKISLAEMARAIPPYTDLMEWADGQLSITLNLGNFLQLTDDPLYFDAYLQSLQ 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500   81 MAFISTLICLLVGYPMAYAIARSSQSSQTVLLLLIMMPTWTAILIRVYAWMGILSNNGLLNSVLMGLGLISEPLTILNTN 160
Cdd:PRK10683 105 VAAISTLCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLLWLGVIDQPLTILHTN 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500  161 IAVYIGIVYSYLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVPLSKNGIIAGCMLVFIPAVGEFVIPELLGG 240
Cdd:PRK10683 185 LAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGG 264

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 15595500  241 PETLMIGKVLWQEFFNNRDWPVASALAVVMLAILIIPIILFNKNQAKELEGK 292
Cdd:PRK10683 265 PDSIMIGRVLWQEFFNNRDWPVASAVAIIMLLLLIVPIMWFHKHQQKSVGEH 316
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 57-270 6.37e-102

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 299.37  E-value: 6.37e-102
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500  57 LNLGNYLMLTDDPLYIDAYLGSLKMAFISTLICLLVGYPMAYAIARSSQSSQTVLLLLIMMPTWTAILIRVYAWMGILSN 136
Cdd:COG1176  51 FTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGR 130

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500 137 NGLLNSVLMGLGLISEPLTILNTNIAVYIGIVYSYLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVPLSKNG 216
Cdd:COG1176 131 NGLLNSLLLALGLIDEPLRLLYTEFAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPG 210

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....
gi 15595500 217 IIAGCMLVFIPAVGEFVIPELLGGPETLMIGKVLWQEFFNNRDWPVASALAVVM 270
Cdd:COG1176 211 IIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQQFLSALNWPLAAALAVVL 264
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 68-232 3.37e-16

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 75.90  E-value: 3.37e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500    68 DPLYIDAYLGSLKMAFISTLICLLVGYPMAYAIARSSQSSQTVLLLLIMMPTWTAILIRVYAWMGILSNNGLLNSVLMGL 147
Cdd:TIGR01581  16 DPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGPYLEAA 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500   148 GLiseplTILNTNIAVYIGIVYSYLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVPLSKNGIIAGCMLVFIP 227
Cdd:TIGR01581  96 GI-----QVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWAR 170


                  ....*
gi 15595500   228 AVGEF 232
Cdd:TIGR01581 171 ALGEF 175
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 75-270 2.06e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 64.61  E-value: 2.06e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500  75 YLGSLKMAFISTLICLLVGYPMAYAIARSSQSSQTVLLLLIMMPTWTAILIRVYAWMGILSNNGLLNsvlmglglisepL 154
Cdd:cd06261   1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWG------------I 68

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500 155 TILNTNIAVYIGIVYsYLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVPLSKNGIIAGCMLVFIPAVGEFVI 234
Cdd:cd06261  69 LPGLGLPALILALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFAL 147

                       170       180       190
                ....*....|....*....|....*....|....*...
gi 15595500 235 PELLGGPETLMIGKVLWQEFFNNR--DWPVASALAVVM 270
Cdd:cd06261 148 VSFLGGGEAPGPGTGLLLIFAILFpgDLGVAAAVALIL 185
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 143-270 2.77e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 46.91  E-value: 2.77e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500   143 VLMGLGLISEPLTILNTNIAVYIGIVYSYLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVPLSKNGIIAGCM 222
Cdd:pfam00528  35 LAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLA 114

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 15595500   223 LVFIPAVGEFVIPELLGGPETL--MIGKVLWQEFFNNRDWPVASALAVVM 270
Cdd:pfam00528 115 LAFGGALGGAVLLEFLGSWPGLglLLIEAILGYDYPEIQGPVLAAALILL 164
 
Name Accession Description Interval E-value
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 1-292 2.94e-136

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 387.91  E-value: 2.94e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500    1 MPTGRHAVIGVPFLWLFLFFLLPFAIVLKISLAEADVAIPPYTEIFAYADQQLQVLLNLGNYLMLTDDPLYIDAYLGSLK 80
Cdd:PRK10683  25 MKHGRKLVIALPYLWLILLFLLPFLIVFKISLAEMARAIPPYTDLMEWADGQLSITLNLGNFLQLTDDPLYFDAYLQSLQ 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500   81 MAFISTLICLLVGYPMAYAIARSSQSSQTVLLLLIMMPTWTAILIRVYAWMGILSNNGLLNSVLMGLGLISEPLTILNTN 160
Cdd:PRK10683 105 VAAISTLCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLLWLGVIDQPLTILHTN 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500  161 IAVYIGIVYSYLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVPLSKNGIIAGCMLVFIPAVGEFVIPELLGG 240
Cdd:PRK10683 185 LAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGG 264

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 15595500  241 PETLMIGKVLWQEFFNNRDWPVASALAVVMLAILIIPIILFNKNQAKELEGK 292
Cdd:PRK10683 265 PDSIMIGRVLWQEFFNNRDWPVASAVAIIMLLLLIVPIMWFHKHQQKSVGEH 316
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 57-270 6.37e-102

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 299.37  E-value: 6.37e-102
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500  57 LNLGNYLMLTDDPLYIDAYLGSLKMAFISTLICLLVGYPMAYAIARSSQSSQTVLLLLIMMPTWTAILIRVYAWMGILSN 136
Cdd:COG1176  51 FTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGR 130

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500 137 NGLLNSVLMGLGLISEPLTILNTNIAVYIGIVYSYLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVPLSKNG 216
Cdd:COG1176 131 NGLLNSLLLALGLIDEPLRLLYTEFAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPG 210

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....
gi 15595500 217 IIAGCMLVFIPAVGEFVIPELLGGPETLMIGKVLWQEFFNNRDWPVASALAVVM 270
Cdd:COG1176 211 IIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQQFLSALNWPLAAALAVVL 264
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 58-268 5.48e-65

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 205.31  E-value: 5.48e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500   58 NLGNYLMLTDdPLYIDAYLGSLKMAFISTLICLLVGYPMAYAIARSSQSSQTVLLLLIMMPTWTAILIRVYAWMGILSNN 137
Cdd:PRK09497  49 TLDNYTRLLD-PLYAEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTK 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500  138 GLLNSVLMGLGLISEPLTILNTNIAVYIGIVYSYLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVPLSKNGI 217
Cdd:PRK09497 128 GYLNEFLLWLGVIDTPIRIMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGI 207

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 15595500  218 IAGCMLVFIPAVGEFVIPELLGGPETLMIGKVLWQEFFNNRDWPVASALAV 268
Cdd:PRK09497 208 IAGCLLVLLPAMGMFYVSDLLGGAKNLLIGNVIKSQFLNIRDWPFGAATSI 258
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
58-270 6.95e-27

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 109.48  E-value: 6.95e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500  58 NLGNYLMLTDDPLYIDAYLGSLKMAFISTLICLLVGYPMAYAIARSSQSSQTVLLLLIMMPTWTAILIRVYAWMGILSNN 137
Cdd:COG1178  39 GLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPN 118

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500 138 GLLNSVLMGLGLIsEPLTILNTNIAVyIGIVYSYLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVPLSKNGI 217
Cdd:COG1178 119 GLLNTLLRALFGL-EPPDIYGLGGII-LVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAI 196

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....
gi 15595500 218 IAGCMLVFIPAVGEFVIPELLGGP-ETLMIGkvLWQEFFNNRDWPVASALAVVM 270
Cdd:COG1178 197 AAGALLVFLLCLADFGTPLVLGGGyTTLTTA--IYQAWLGDFDLGAAAALALVL 248
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 59-270 9.54e-27

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 105.19  E-value: 9.54e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500  59 LGNYLMLTDDPLYIDAYLGSLKMAFISTLICLLVGYPMAYAIARSSQSSQTVLLLLIMMPTWTAILIrvyawMGIlsnnG 138
Cdd:COG1177  47 LRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIV-----LGV----A 117

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500 139 LLnSVLMGLGLISEPLTIlntnIAVYIGIVysyLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVPLSKNGII 218
Cdd:COG1177 118 LL-LLFSALGLSGGLWGL----ILAHVVFT---LPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGIL 189

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|..
gi 15595500 219 AGCMLVFIPAVGEFVIPELLGGPETLMIGKVLWQEFFNNRDwPVASALAVVM 270
Cdd:COG1177 190 AGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGIS-PEINALSTLL 240
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 78-247 1.56e-24

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 98.20  E-value: 1.56e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500  78 SLKMAFISTLICLLVGYPMAYAIARSSQSSQTVLLLLIMMP-------TWTAILIrvyawmgILSNNGLLNSVLMGLGLI 150
Cdd:COG4149  12 SLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPlvlpptvLGFYLLL-------LFGRNGPLGQLLEELFGI 84

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500 151 seplTILNTNIAVYIG-IVYSyLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVPLSKNGIIAGCMLVFIPAV 229
Cdd:COG4149  85 ----SLVFTWTGAVLAsVVVS-LPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARAL 159

                       170
                ....*....|....*...
gi 15595500 230 GEFVIpellggpeTLMIG 247
Cdd:COG4149 160 GEFGA--------TLMFA 169
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
57-270 5.96e-23

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 98.31  E-value: 5.96e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500  57 LNLGNYLMLTDDPLYIDAYLGSLKMAFISTLICLLVGYPMAYAIARSSQSSQTVLLLLIMMPtwtailirvYAwmgilsn 136
Cdd:COG1178 322 LTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLP---------YA------- 385

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500 137 nglLNSVLMGLGLI-----SEPLTILNTNIAVYIGIVYSYLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVP 211
Cdd:COG1178 386 ---VPGIVLGLGLLllfnrPLPLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLP 462

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 15595500 212 LSKNGIIAGCMLVFIPAVGEFVIPELLGGPETLMIGKVLWQeFFNNRDWPVASALAVVM 270
Cdd:COG1178 463 LLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIYQ-LASSGRYGEAAALALLL 520
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
59-270 6.73e-21

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 90.19  E-value: 6.73e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500  59 LGNYLMLTDDPLYIDAYLGSLKMAFISTLICLLVGYPMAYAIARSSqSSQTVLLLLIMMPTWTAILIRVYAWMGILS-NN 137
Cdd:COG1175  62 LDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNRKL-RGRGFFRTLFFLPWVISPVVVALIWKWLFNpDY 140

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500 138 GLLNSVLMGLGL-----ISEPLTILntnIAVYIGIVYSYLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVPL 212
Cdd:COG1175 141 GLLNALLGALGLepinwLGDPSLAL---PAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPL 217

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15595500 213 SKNGIIAGCMLVFIPAVGEFVIPELL--GGP--ETLMIGKVLWQEFFNNRDWPVASALAVVM 270
Cdd:COG1175 218 LRPTILFVLVLSTIGALQVFDLVYVLtgGGPgnSTTTLVLYIYQTAFQQFDFGYASAIAVVL 279
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 57-232 1.95e-19

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 85.57  E-value: 1.95e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500  57 LNLGNYLMLTDDPLYIDAYLGSLKMAFISTLICLLVGYPMAYAIARSS----QSSQTVLLLLIMMPTWTAILIRVYawmg 132
Cdd:COG0555  38 LGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRfpgkRLVDALVDLPFALPTAVAGIALLL---- 113

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500 133 ILSNNGLLNSVLMGLGLiseplTILNTNIAVYIGIVYSYLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVPL 212
Cdd:COG0555 114 LFGPNGWLGQLLAPLGI-----KVAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPL 188

                       170       180
                ....*....|....*....|
gi 15595500 213 SKNGIIAGCMLVFIPAVGEF 232
Cdd:COG0555 189 LLPALLTGFALAFARALGEF 208
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 68-232 3.37e-16

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 75.90  E-value: 3.37e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500    68 DPLYIDAYLGSLKMAFISTLICLLVGYPMAYAIARSSQSSQTVLLLLIMMPTWTAILIRVYAWMGILSNNGLLNSVLMGL 147
Cdd:TIGR01581  16 DPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGPYLEAA 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500   148 GLiseplTILNTNIAVYIGIVYSYLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVPLSKNGIIAGCMLVFIP 227
Cdd:TIGR01581  96 GI-----QVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWAR 170


                  ....*
gi 15595500   228 AVGEF 232
Cdd:TIGR01581 171 ALGEF 175
cysT CHL00187
sulfate transport protein; Provisional
 61-232 5.31e-14

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 70.04  E-value: 5.31e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500   61 NYLMLTDDPLYIDAYLGSLKMAFISTLICLLVGYPMAYAIARSSQSSQTVLLLLIMMPTWTAILIRVYAWMGILSNNGLL 140
Cdd:CHL00187  43 DFLQKATEPIALSAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGWI 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500  141 NSVLMGLGLiseplTILNTNIAVYIGIVYSYLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVPLSKNGIIAG 220
Cdd:CHL00187 123 GHLLSHLGI-----QIVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTG 197

                        170
                 ....*....|..
gi 15595500  221 CMLVFIPAVGEF 232
Cdd:CHL00187 198 LALTFSRAIGEY 209
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 57-270 5.21e-13

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 67.38  E-value: 5.21e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500    57 LNLGNYLMLTDDPLYIDAYLGSLKMAFISTLICLLVGYPMAYAIARSSQSSQTVLLLLIMMPTWTAILIRVYAWMGILSN 136
Cdd:TIGR00969  44 KGLGQFWQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIDLPFALSPVVAGLTLALLYGS 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500   137 NGLLNSVLMGLGLiseplTILNTNIAVYIGIVYSYLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVPLSKNG 216
Cdd:TIGR00969 124 NGWLGSWLASFGI-----QIIFTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWA 198

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15595500   217 IIAGCMLVFIPAVGEFVIPELLGG--PETLMIGKVLWQEFFNNRDWPVASALAVVM 270
Cdd:TIGR00969 199 LLYGVVLTFARALGEFGAVVVVSGniPGKTLTLPLLIEERLEQYDYPGAYVIAAVL 254
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 59-240 9.10e-13

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 68.17  E-value: 9.10e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500    59 LGNYLMLTDDPLYIDAYLGSLKMAFISTLICLLVGYPMAYAIARSS----QSSQTVLLLLIMMPTWTAILIRVYawmgIL 134
Cdd:TIGR03262  40 LANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRipgkGAFRLVALLPLLAPSLLPAISLIY----LF 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500   135 SNNGLLNSVLmGLGLISEPLTILntniavyIGIVYSYLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVPLSK 214
Cdd:TIGR03262 116 GNQGLLKGLL-GGFSIYGFWGIV-------IGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAK 187

                         170       180
                  ....*....|....*....|....*.
gi 15595500   215 NGIIAGCMLVFIPAVGEFVIPELLGG 240
Cdd:TIGR03262 188 YGLISAAFVVFTLVITDFGVPKVIGG 213
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 75-270 2.06e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 64.61  E-value: 2.06e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500  75 YLGSLKMAFISTLICLLVGYPMAYAIARSSQSSQTVLLLLIMMPTWTAILIRVYAWMGILSNNGLLNsvlmglglisepL 154
Cdd:cd06261   1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWG------------I 68

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500 155 TILNTNIAVYIGIVYsYLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVPLSKNGIIAGCMLVFIPAVGEFVI 234
Cdd:cd06261  69 LPGLGLPALILALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFAL 147

                       170       180       190
                ....*....|....*....|....*....|....*...
gi 15595500 235 PELLGGPETLMIGKVLWQEFFNNR--DWPVASALAVVM 270
Cdd:cd06261 148 VSFLGGGEAPGPGTGLLLIFAILFpgDLGVAAAVALIL 185
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 41-270 5.63e-12

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 64.73  E-value: 5.63e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500  41 PYTEIFAYADQQLQVLLNLGNYLMLTDDPLYIDAYLGSLKMAFISTLICLLVGYPMAYAIARSSQSSQTVLLLLI----M 116
Cdd:COG0395  42 PPAEIFSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLIlatlM 121

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500 117 MPtWTAILIRVYAwmgILSNNGLLNSVLmGLGLisePLTILNTNIAVYigIVYSYlpFMILPlyanlvkhdPSLLEAASD 196
Cdd:COG0395 122 IP-GQVLLIPLYL---LFRQLGLLNTYW-GLIL---PYLAFGLPFGIF--LLRQF--FRSIP---------RELEEAARI 180

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15595500 197 LGARNFTSFWKITVPLSKNGIIAGCMLVFIPAVGEFVIP-ELLGGPE--TLMIGKVLWQEFFNNrDWPVASALAVVM 270
Cdd:COG0395 181 DGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPlILLTSPDlrTLPVGLASFQGQYGT-DWGLLMAAAVIA 256
modB PRK09421
molybdate ABC transporter permease subunit;
63-232 2.95e-11

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 61.86  E-value: 2.95e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500   63 LMLTddPLYIDAYLGSLKMAFISTLICLLVGYPMAYAIARSSQSSQTVLLLLIMMPTwtaILIRVYAwmgilsnnGLLNS 142
Cdd:PRK09421   1 MILS--DPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPL---VLPPVVT--------GYLLL 67

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500  143 VLMGL-GLISEPLtilntniAVYIGIVYSY-------------LPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKI 208
Cdd:PRK09421  68 ISMGRrGFIGQWL-------YEWFGISFAFswrgaalaaavmaFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTI 140

                        170       180
                 ....*....|....*....|....
gi 15595500  209 TVPLSKNGIIAGCMLVFIPAVGEF 232
Cdd:PRK09421 141 TLPLTLPGIIAGTVLAFARSLGEF 164
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 57-270 8.57e-11

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 61.56  E-value: 8.57e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500   57 LNLGNYLMLTDDPLYIDAYLGSLKMAFISTLICLLVGYPMAYAIA----RSSQSSQTVLLLLIMMPTWtaiLIRVyAWMG 132
Cdd:PRK15050  57 LGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAfvpfPGASLVGRFIDTFVAFPSF---LITL-AFTF 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500  133 ILSNNGLLNSVLMGL-GLISEPLTILNTNIAVYIGIVYSYLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVP 211
Cdd:PRK15050 133 LYGSAGSVNIALQRLfGLEAPPLDFLYSPGGVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILP 212

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 15595500  212 LSKNGIIAGCMLVFIPAVGEFVIPELLGGPETLMIGKVLWQEFFNNRDWPVASALAVVM 270
Cdd:PRK15050 213 EAWPALAAGGSLCLLLTLNEFGIVLFTGAKDVVTLPVLIYSKAIVDFDYPTACAIAVVN 271
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 57-286 2.78e-09

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 56.56  E-value: 2.78e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500    57 LNLGNYLMLTDDPLYIDAYLGSLKMAFISTLICLLVGYPMAYAIARSSQSSQTVLLLLIMMPTWTAILIRVYAWMGILSN 136
Cdd:TIGR02139  34 LGWAGFWQIITEPRVLAAYKLSFGTALIAALINAVFGTLLAWVLVRYRFPGKRIVDALVDLPFALPTAVAGIALATLYSP 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500   137 NGLLNSVLMGLGLiseplTILNTNIAVYIGIVYSYLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVPLSKNG 216
Cdd:TIGR02139 114 NGWIGSFLAPLGI-----KIAFTPLGIVIALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWRVILPALLPA 188

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15595500   217 IIAGCMLVFIPAVGEFVIPELLGG--PETLMIGKVLWQEFFNNRDWPVASALAVVMLAILIIPIILFNKNQA 286
Cdd:TIGR02139 189 LLTGFALAFARAVGEYGSVIFIAGnlPMKTEIAPLLIFQKLEQYDYAGATAIASVMLIISFVILLFINLLQW 260
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
57-270 1.57e-08

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 54.37  E-value: 1.57e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500   57 LNLGNYLMLTDDPLYIDAYLGSLKMAFISTLICLLVGYPMAYAIARSSQSSQTVLLLLIMMPTWTAILIRVYAWMGILSN 136
Cdd:PRK10971  42 MSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSV 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500  137 NGLLNSVLMGLGLiseplTILNTNIAVYIGIVYSYLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVPLSKNG 216
Cdd:PRK10971 122 NGWYGEWLAKFDI-----KVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPA 196

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15595500  217 IIAGCMLVFIPAVGEFvipellgGPETLMIGKVLW-------------QEFfnnrDWPVASALAVVM 270
Cdd:PRK10971 197 LLAGVALSFTRSLGEF-------GAVIFIAGNIAWktevtslmifvrlQEF----DYPAASAIASVI 252
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 64-242 8.93e-08

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 51.91  E-value: 8.93e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500   64 MLTDDPLyIDAYLGSLKMAFISTLICLLVGYPMAYAIARSSQSSQTVL--LLLIMMPTWTAIlirvyawMGIlsnnGLLn 141
Cdd:PRK09500  49 LFNNDSL-LQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVsgMLFVVMMSPDIV-------MAI----SLL- 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500  142 SVLMGLGLISEPLTILNTNIAVYigivysyLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVPLSKNGIIAGC 221
Cdd:PRK09500 116 VLFMLLGIQLGFWSLLFAHITFC-------LPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGW 188

                        170       180
                 ....*....|....*....|.
gi 15595500  222 MLVFIPAVGEFVIPELLGGPE 242
Cdd:PRK09500 189 LLSFTLSLDDVVVSSFVTGPS 209
COG4132 COG4132
ABC-type uncharacterized transport system, permease component [General function prediction ...
 59-270 4.58e-07

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443307 [Multi-domain]  Cd Length: 286  Bit Score: 50.19  E-value: 4.58e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500  59 LGNYLMLTDdPLYIDAYLGSLKMAFISTLICLLVGYPMAYAIARSSQS-SQTVLLLLIMMPTWTAILIRVYAWMGILSNN 137
Cdd:COG4132  50 LANYAELTS-PFYLQAFWNSIWLSLASALIGAVIGLLLAYALRRGGPGwLRRAVLAFSGVASNFAGVPLAFAFIATLGRN 128

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500 138 GLLNSVLMGLGL-ISEPLTILNTN--IAVYIgivYSYLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVPLSK 214
Cdd:COG4132 129 GLVTLLLKQLGIdLYDGFNLYSFWglILVYL---YFQIPLMVLLLYPALDGLRREWREAAALLGASRWQYWRRVALPVLA 205

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500 215 NGIIAGCMLVFIPAVGEFVIPELLGGPE----TLMIGKVLWQEFFNNRDwpVASALAVVM 270
Cdd:COG4132 206 PSLLGTFLLLFANAFGAYATAYALTGGNynlvPIRIGALISGDVLLDPN--LGAALALGM 263
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 143-270 2.77e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 46.91  E-value: 2.77e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500   143 VLMGLGLISEPLTILNTNIAVYIGIVYSYLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVPLSKNGIIAGCM 222
Cdd:pfam00528  35 LAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLA 114

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 15595500   223 LVFIPAVGEFVIPELLGGPETL--MIGKVLWQEFFNNRDWPVASALAVVM 270
Cdd:pfam00528 115 LAFGGALGGAVLLEFLGSWPGLglLLIEAILGYDYPEIQGPVLAAALILL 164
permease_CysW TIGR02140
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ...
 59-232 8.10e-05

sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 162725  Cd Length: 261  Bit Score: 43.15  E-value: 8.10e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500    59 LGNYLMLTDDPLYIDAYLGSLKMAFISTLICLLVGYPMAYAIARSSQSSQTVLLLLIMMPTWTAILIRVYAWMGILSNNG 138
Cdd:TIGR02140  33 FGVFFAAISDPDALSAIKLTLLVALIVVPLNTVFGVCAAWVLTRFQFPGKRLLLTIIDLPFSVSPVVAGLIFVLLYGSQG 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500   139 LLNSVLMGLGLiseplTILNTNIAVYIGIVYSYLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVPLSKNGII 218
Cdd:TIGR02140 113 WLGPWLEDLDI-----KIIFSLPGIVLATMFVTCPFVARELIPVMEEQGTEQEEAALTLGASWWQTFWRVTLPNIKWGLL 187

                         170
                  ....*....|....
gi 15595500   219 AGCMLVFIPAVGEF 232
Cdd:TIGR02140 188 YGVILCNARAMGEF 201
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 83-241 1.49e-03

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 39.56  E-value: 1.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500    83 FISTLICLLVGYPMAYAIA---------RSSQSSQTVLLLLIMMPTwtailiRVYAWMGILSNNGLLNSVLMGLGLISEP 153
Cdd:TIGR02138  69 LITSLIALLIAVPVGIGIAiflseiapkRVRSVLKPVVELLAGIPS------VVYGFWGLFVLVPFLKPHFQPFLGSNLG 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595500   154 LTILNTNIAVYIGIVysyLPFMILPLYANLVKH-----DPSLLEAASDLGARNFTSFWKITVPLSKNGIIAGCMLVFIPA 228
Cdd:TIGR02138 143 LIPLFGGPILTAGIV---LAIMILPTIASISRDalravPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRA 219

                         170
                  ....*....|...
gi 15595500   229 VGEFVIPELLGGP 241
Cdd:TIGR02138 220 LGETMAVTMVIGN 232
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 187-241 2.51e-03

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 38.68  E-value: 2.51e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 15595500  187 DPSLLEAASDLGARNFTSFWKITVPLSKNGIIAGCMLVFIPAVGEFVIPELLGGP 241
Cdd:PRK10592 167 DRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGP 221
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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